FN2707-S-1 Chr1 10179903 10179903 0 0 Insertion 2 upstream_gene_variant HET FN2707-S-1 Chr1 25737097 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2707-S-1 Chr1 27444173 27444173 0 0 Insertion 3 downstream_gene_variant HET FN2707-S-1 Chr1 28566540 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2707-S-1 Chr1 33236627 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr1 40685653 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2707-S-1 Chr1 42997097 42997104 0 0 Deletion 7 downstream_gene_variant HET FN2707-S-1 Chr10 11363731 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g22010 retrotransposon protein, putative, unclassified, expressed FN2707-S-1 Chr10 3555803 3555804 0 0 Deletion 1 upstream_gene_variant HET FN2707-S-1 Chr10 5486005 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr10 7266247 7266281 0 0 Deletion 34 INTERGENIC HET FN2707-S-1 Chr11 15006037 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g26200 expressed protein FN2707-S-1 Chr11 4273268 4273287 0 0 Deletion 19 upstream_gene_variant HET FN2707-S-1 Chr11 5302271 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr12 1939576 1939577 0 0 Deletion 1 UTR_3_PRIME HOMO FN2707-S-1 Chr12 6981640 Chr3 2404419 0 Translocation 0 LOC_Os12g12664 expressed protein FN2707-S-1 Chr12 8954890 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN2707-S-1 Chr2 14420186 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr2 23589382 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr2 3021181 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr2 33477237 T-G 0 0 Single Base Substitution 0 INTRON HET FN2707-S-1 Chr2 7771116 7771116 0 0 Insertion 2 downstream_gene_variant HET FN2707-S-1 Chr3 14644109 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g25590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2707-S-1 Chr3 15916168 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr3 23303977 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2707-S-1 Chr3 24555630 24555630 0 0 Insertion 40 downstream_gene_variant HET FN2707-S-1 Chr3 26826304 26834118 0 0 Inversion 7814 FN2707-S-1 Chr3 26826334 26834120 0 0 Inversion 7786 FN2707-S-1 Chr3 33760213 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2707-S-1 Chr3 34559932 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g60820 transporter, major facilitator superfamily domain containing protein, expressed FN2707-S-1 Chr3 9224383 9224397 0 0 Deletion 14 INTERGENIC HET FN2707-S-1 Chr4 10792584 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2707-S-1 Chr4 11183593 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr4 13007908 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr4 1512165 1512166 0 0 Deletion 1 frameshift_variant HET LOC_Os04g03490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2707-S-1 Chr4 1538725 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr4 23060186 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN2707-S-1 Chr4 27049882 27049883 0 0 Deletion 1 INTERGENIC HET FN2707-S-1 Chr4 4182096 4182096 0 0 Insertion 1 upstream_gene_variant HET FN2707-S-1 Chr5 18363991 Chr3 25422326 0 Translocation 0 FN2707-S-1 Chr5 20890610 G-T 0 0 Single Base Substitution 0 INTRON HET FN2707-S-1 Chr5 2567681 2567681 0 0 Insertion 2 INTRON HET FN2707-S-1 Chr5 27408132 27408171 0 0 Deletion 39 upstream_gene_variant HET FN2707-S-1 Chr5 8555343 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr6 11367176 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr6 13036320 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g22430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2707-S-1 Chr6 7347056 7347056 0 0 Insertion 1 INTRON HET FN2707-S-1 Chr6 8092898 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr6 8354613 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr7 14026266 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr7 14106441 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr7 14106442 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr7 18518130 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr7 23017399 23017399 0 0 Insertion 1 upstream_gene_variant HET FN2707-S-1 Chr7 2650368 2650368 0 0 Insertion 2 INTERGENIC HET FN2707-S-1 Chr7 29541091 A-G 0 0 Single Base Substitution 0 INTRON HET FN2707-S-1 Chr7 8007347 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr7 8432360 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr8 11012988 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr8 13069113 Chr5 5933414 0 Translocation 0 FN2707-S-1 Chr8 15197952 15197952 0 0 Insertion 12 disruptive_inframe_insertion HET LOC_Os08g25030 plant protein of unknown function domain containing protein, expressed FN2707-S-1 Chr8 17044124 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr8 19056491 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr8 19987952 G-T 0 0 Single Base Substitution 0 INTRON HET FN2707-S-1 Chr8 22484954 22484970 0 0 Deletion 16 intergenic_region HET FN2707-S-1 Chr9 1026763 1026766 0 0 Deletion 3 upstream_gene_variant HET FN2707-S-1 Chr9 15090789 15090792 0 0 Deletion 3 UTR_5_PRIME HET FN2707-S-1 Chr9 17512984 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2707-S-1 Chr9 3409287 3409289 0 0 Deletion 2 INTERGENIC HET FN2707-S-1 Chr9 4372030 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2707-S-1 Chr9 8397356 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g14200 retrotransposon protein, putative, unclassified, expressed