FN2708-S-1 Chr1 10777531 G-A 0 0 Single Base Substitution 0 INTRON HET FN2708-S-1 Chr1 12162122 12162150 0 0 Deletion 28 upstream_gene_variant HET FN2708-S-1 Chr1 17114564 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr1 21759427 21759428 0 0 Deletion 1 downstream_gene_variant HET FN2708-S-1 Chr1 24398279 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g42880 transferase family protein, putative, expressed FN2708-S-1 Chr1 32743063 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr1 33799752 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr1 43024685 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2708-S-1 Chr10 17036647 17036647 0 0 Insertion 28 upstream_gene_variant HET FN2708-S-1 Chr10 19957711 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr10 3458004 3458004 0 0 Insertion 39 upstream_gene_variant HET FN2708-S-1 Chr10 4369908 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g08060 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2708-S-1 Chr10 528110 528111 0 0 Deletion 1 INTERGENIC HET FN2708-S-1 Chr10 5787856 6277082 0 0 Inversion 489226 FN2708-S-1 Chr10 8545410 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2708-S-1 Chr10 8660603 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr11 15245050 15245051 0 0 Deletion 1 INTERGENIC HOMO FN2708-S-1 Chr11 2293021 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2708-S-1 Chr11 23201344 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2708-S-1 Chr11 23201345 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2708-S-1 Chr11 23784729 23784729 0 0 Insertion 1 upstream_gene_variant HET FN2708-S-1 Chr11 27074008 27074008 0 0 Insertion 1 upstream_gene_variant HET FN2708-S-1 Chr11 28275633 Chr4 22819310 0 Translocation 0 FN2708-S-1 Chr11 28345609 28345613 0 0 Deletion 4 INTRON HOMO FN2708-S-1 Chr11 3629814 3656456 0 0 Inversion 26642 LOC_Os11g07225 expressed protein FN2708-S-1 Chr11 3629818 3656463 0 0 Inversion 26645 LOC_Os11g07225 expressed protein FN2708-S-1 Chr11 3654451 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2708-S-1 Chr11 9383139 A-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2708-S-1 Chr11 9478083 G-A 0 0 Single Base Substitution 0 INTRON HET FN2708-S-1 Chr12 10792621 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr12 12474125 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr12 15532350 15532351 0 0 Deletion 1 downstream_gene_variant HET FN2708-S-1 Chr12 24258687 24258697 0 0 Deletion 10 INTERGENIC HET FN2708-S-1 Chr12 4277653 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr2 1587011 1587011 0 0 Insertion 2 INTERGENIC HET FN2708-S-1 Chr2 18024864 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr2 22207158 22207158 0 0 Insertion 2 upstream_gene_variant HET FN2708-S-1 Chr2 28182669 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2708-S-1 Chr2 30643102 30643104 0 0 Deletion 2 downstream_gene_variant HET FN2708-S-1 Chr2 34283517 34283517 0 0 Insertion 1 intergenic_region HET FN2708-S-1 Chr3 12228120 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr3 15341852 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr3 21552725 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr3 28274552 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2708-S-1 Chr3 29966319 29966320 0 0 Deletion 1 downstream_gene_variant HET FN2708-S-1 Chr3 34238255 A-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2708-S-1 Chr3 36032971 36032974 0 0 Deletion 3 INTERGENIC HET FN2708-S-1 Chr4 12126014 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr4 13651939 T-A 0 0 Single Base Substitution 0 INTRON HET FN2708-S-1 Chr4 1382552 G-A 0 0 Single Base Substitution 0 INTRON HET FN2708-S-1 Chr4 15138019 15138019 0 0 Insertion 1 frameshift_variant HET LOC_Os04g26010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2708-S-1 Chr4 16935597 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr4 17329863 17329864 0 0 Deletion 1 frameshift_variant HET LOC_Os04g29224 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2708-S-1 Chr4 1944 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr4 22819421 Chr3 24030531 0 Translocation 0 LOC_Os03g43070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2708-S-1 Chr4 29597604 29597605 0 0 Deletion 1 INTRON HOMO FN2708-S-1 Chr4 4095918 4095921 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os04g07710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2708-S-1 Chr4 6110329 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr5 1016298 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g02820 protein transport protein-related, putative, expressed FN2708-S-1 Chr5 10238432 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr5 21652238 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr5 6878934 G-A 0 0 Single Base Substitution 0 INTRON HET FN2708-S-1 Chr6 10442619 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr6 13061222 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr6 16283453 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr6 16283454 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr6 18652730 18652730 0 0 Insertion 1 upstream_gene_variant HET FN2708-S-1 Chr6 18794602 18794626 0 0 Deletion 24 disruptive_inframe_deletion HET LOC_Os06g32280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2708-S-1 Chr6 19732995 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr6 20859265 20859268 0 0 Deletion 3 INTERGENIC HET FN2708-S-1 Chr6 22482944 22482954 0 0 Deletion 10 upstream_gene_variant HET FN2708-S-1 Chr6 25923832 25923842 0 0 Deletion 10 downstream_gene_variant HET FN2708-S-1 Chr7 11327689 T-A 0 0 Single Base Substitution 0 INTRON HET FN2708-S-1 Chr7 11392750 11392750 0 0 Insertion 1 upstream_gene_variant HET FN2708-S-1 Chr7 16536956 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr7 19605296 19605296 0 0 Insertion 3 INTRON HET FN2708-S-1 Chr7 20462920 20462920 0 0 Insertion 38 upstream_gene_variant HET FN2708-S-1 Chr7 24274756 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g40520 formin-like protein 20, putative, expressed FN2708-S-1 Chr7 27362691 27362698 0 0 Deletion 7 upstream_gene_variant HET FN2708-S-1 Chr7 623317 Chr3 22576444 0 Translocation 0 FN2708-S-1 Chr7 7899148 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2708-S-1 Chr8 1629903 1629912 0 0 Deletion 9 CODON_DELETION HET LOC_Os08g03470 MBTB15 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN2708-S-1 Chr8 17085853 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr8 17973215 17973216 0 0 Deletion 1 frameshift_variant HET LOC_Os08g29290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2708-S-1 Chr8 24612150 24612150 0 0 Insertion 1 upstream_gene_variant HET FN2708-S-1 Chr8 24956181 24956188 0 0 Deletion 7 INTERGENIC HET FN2708-S-1 Chr8 8367591 Chr2 16568341 0 Translocation 0 FN2708-S-1 Chr8 9872965 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g16190 retrotransposon protein, putative, unclassified, expressed FN2708-S-1 Chr9 1133566 G-T 0 0 Single Base Substitution 0 INTRON HET FN2708-S-1 Chr9 12661658 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr9 13436046 13436046 0 0 Insertion 20 upstream_gene_variant HET FN2708-S-1 Chr9 15101564 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr9 16167563 Chr6 4276869 0 Translocation 0 LOC_Os06g08600 versicolorin reductase, putative, expressed FN2708-S-1 Chr9 4502118 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2708-S-1 Chr9 4533826 A-G 0 0 Single Base Substitution 0 INTERGENIC HET