FN2709-S-1 Chr1 12456551 12456552 0 0 Deletion 1 upstream_gene_variant HET FN2709-S-1 Chr1 16429382 G-T 0 0 Single Base Substitution 0 INTRON HET FN2709-S-1 Chr1 17287297 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2709-S-1 Chr1 19014604 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2709-S-1 Chr1 20235219 C-G 0 0 Single Base Substitution 0 INTRON HET FN2709-S-1 Chr1 21306639 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2709-S-1 Chr1 22625669 T-A 0 0 Single Base Substitution 0 INTRON HET FN2709-S-1 Chr1 23139586 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g40910 transposon protein, putative, unclassified FN2709-S-1 Chr1 26555324 26555325 0 0 Deletion 1 upstream_gene_variant HET FN2709-S-1 Chr1 28637786 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2709-S-1 Chr1 32659264 33203810 0 0 Inversion 544546 FN2709-S-1 Chr1 32659277 33203810 0 0 Inversion 544533 FN2709-S-1 Chr1 32885325 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2709-S-1 Chr1 38467392 38467392 0 0 Insertion 1 upstream_gene_variant HET FN2709-S-1 Chr1 41752625 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr1 41752633 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr1 42908486 42908488 0 0 Deletion 2 INTERGENIC HOMO FN2709-S-1 Chr1 5229966 5229967 0 0 Deletion 1 downstream_gene_variant HET FN2709-S-1 Chr1 679274 C-T 0 0 Single Base Substitution 0 INTRON HET FN2709-S-1 Chr10 13117777 13117779 0 0 Deletion 2 INTERGENIC HET FN2709-S-1 Chr10 13397231 C-A 0 0 Single Base Substitution 0 INTRON HET FN2709-S-1 Chr10 14496026 14496031 0 0 Deletion 5 INTRON HOMO FN2709-S-1 Chr10 18637152 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr10 21612546 Chr6 25743065 0 Translocation 0 LOC_Os06g42824 expressed protein FN2709-S-1 Chr10 21612546 Chr6 25743065 0 Translocation 0 LOC_Os10g40324 expressed protein FN2709-S-1 Chr10 23073199 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr10 4022738 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr10 5084382 5084383 0 0 Deletion 1 downstream_gene_variant HET FN2709-S-1 Chr10 920617 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr10 9571037 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr11 15834268 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g27520 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2709-S-1 Chr11 22094146 Chr8 7405061 0 Translocation 0 FN2709-S-1 Chr11 22753380 Chr2 5999994 0 Translocation 0 FN2709-S-1 Chr11 23691196 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr11 26448238 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr11 27146858 27146858 0 0 Insertion 28 upstream_gene_variant HET FN2709-S-1 Chr11 27216864 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr12 16057394 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr12 19067694 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr12 19067696 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr12 25770138 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g41650 helix-loop-helix DNA-binding domain containing protein, expressed FN2709-S-1 Chr12 25845091 25845091 0 0 Insertion 1 upstream_gene_variant HET FN2709-S-1 Chr12 4669337 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr12 4930183 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr12 6912079 C-T 0 0 Single Base Substitution 0 INTRON HET FN2709-S-1 Chr12 8552992 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr2 10185616 10185628 0 0 Deletion 12 intron_variant HET FN2709-S-1 Chr2 10533453 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr2 14922677 14922677 0 0 Insertion 1 frameshift_variant HET LOC_Os02g25540 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2709-S-1 Chr2 21724644 C-G 0 0 Single Base Substitution 0 INTRON HET FN2709-S-1 Chr2 22548586 Chr1 3012122 0 Translocation 0 LOC_Os01g06330 retrotransposon protein, putative, unclassified, expressed FN2709-S-1 Chr2 25167600 25167601 0 0 Deletion 1 downstream_gene_variant HET FN2709-S-1 Chr2 34448297 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr3 11053618 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr3 14063611 A-G 0 0 Single Base Substitution 0 INTRON HET FN2709-S-1 Chr3 14748060 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr3 20011166 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2709-S-1 Chr3 21803720 21803720 0 0 Insertion 1 downstream_gene_variant HET FN2709-S-1 Chr3 23819291 G-A 0 0 Single Base Substitution 0 INTRON HET FN2709-S-1 Chr3 32911488 G-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2709-S-1 Chr3 35617386 35617393 0 0 Deletion 7 downstream_gene_variant HET FN2709-S-1 Chr3 3972141 3972142 0 0 Deletion 1 INTRON HOMO FN2709-S-1 Chr3 4131267 4131275 0 0 Deletion 8 UTR_3_PRIME HOMO FN2709-S-1 Chr3 6470887 A-G 0 0 Single Base Substitution 0 INTRON HET FN2709-S-1 Chr4 21584925 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2709-S-1 Chr4 21585263 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2709-S-1 Chr4 24094223 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN2709-S-1 Chr4 25559052 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g43180 transposon protein, putative, unclassified, expressed FN2709-S-1 Chr4 26486046 T-G 0 0 Single Base Substitution 0 INTRON HET FN2709-S-1 Chr4 26501103 26501103 0 0 Insertion 2 upstream_gene_variant HET FN2709-S-1 Chr4 26734141 26734141 0 0 Insertion 2 INTRON HOMO FN2709-S-1 Chr4 27920078 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2709-S-1 Chr4 27975544 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr4 30230349 C-A 0 0 Single Base Substitution 0 START_GAINED HET FN2709-S-1 Chr4 3553622 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr4 6859011 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g12420 retrotransposon protein, putative, unclassified, expressed FN2709-S-1 Chr4 7000 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2709-S-1 Chr4 8194449 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr5 10667149 10667152 0 0 Deletion 3 upstream_gene_variant HET FN2709-S-1 Chr5 1502007 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g03550 MYB family transcription factor, putative, expressed FN2709-S-1 Chr5 17279091 Chr2 11136431 0 Translocation 0 LOC_Os05g29860 mitochondrial carrier protein, putative, expressed FN2709-S-1 Chr5 17279093 Chr2 11135897 0 Translocation 0 LOC_Os05g29860 mitochondrial carrier protein, putative, expressed FN2709-S-1 Chr5 17762176 17762177 0 0 Deletion 1 upstream_gene_variant HET FN2709-S-1 Chr5 23303591 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr5 23303592 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr5 25904350 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr5 29795630 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr5 5269325 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g09380 AR791, putative, expressed FN2709-S-1 Chr5 7778310 G-A 0 0 Single Base Substitution 0 INTRON HET FN2709-S-1 Chr6 10664073 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr6 11000810 11000810 0 0 Insertion 1 upstream_gene_variant HET FN2709-S-1 Chr6 26926156 26926156 0 0 Insertion 1 frameshift_variant HET LOC_Os06g44590 retrotransposon protein, putative, unclassified, expressed FN2709-S-1 Chr6 3681366 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr7 10010531 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr7 10471460 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr7 11578448 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr7 11933528 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr7 21595020 T-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os07g36150 formin-like protein 3 precursor, putative, expressed FN2709-S-1 Chr7 27289833 27289833 0 0 Insertion 2 upstream_gene_variant HET FN2709-S-1 Chr7 28386356 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr7 28685699 28685700 0 0 Deletion 1 3_prime_UTR_variant HET FN2709-S-1 Chr7 7456695 7456695 0 0 Insertion 1 upstream_gene_variant HET FN2709-S-1 Chr8 10953767 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2709-S-1 Chr8 13069668 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr8 14304167 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g23630 retrotransposon protein, putative, unclassified, expressed FN2709-S-1 Chr8 16734275 Chr6 17008860 0 Translocation 0 FN2709-S-1 Chr8 17507783 17507783 0 0 Insertion 43 downstream_gene_variant HET FN2709-S-1 Chr8 17845289 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g29150 phospholipid-transporting ATPase, putative, expressed FN2709-S-1 Chr8 21933266 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr8 22787352 22787352 0 0 Insertion 1 intron_variant HET FN2709-S-1 Chr8 23227320 G-A 0 0 Single Base Substitution 0 INTRON HET FN2709-S-1 Chr8 24707443 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr8 2710572 2710573 0 0 Deletion 1 upstream_gene_variant HET FN2709-S-1 Chr8 27820285 27820287 0 0 Deletion 2 INTERGENIC HET FN2709-S-1 Chr8 4366812 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr8 5248589 Chr1 39255030 0 Translocation 0 FN2709-S-1 Chr8 5252904 Chr1 39099944 0 Translocation 0 FN2709-S-1 Chr8 6183155 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr8 8638721 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr8 9482107 9482107 0 0 Insertion 1 frameshift_variant HET LOC_Os08g15600 stomatin-like protein 2, putative, expressed FN2709-S-1 Chr9 12273396 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr9 17071614 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2709-S-1 Chr9 21442116 21442151 0 0 Deletion 35 frameshift_variant HET LOC_Os09g37170 retrotransposon protein, putative, unclassified, expressed FN2709-S-1 Chr9 2449714 2449715 0 0 Deletion 1 upstream_gene_variant HET FN2709-S-1 Chr9 2820208 2820209 0 0 Deletion 1 intergenic_region HET FN2709-S-1 Chr9 603754 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2709-S-1 Chr9 7749089 Chr5 15268435 0 Translocation 0 FN2709-S-1 Chr9 7749098 Chr5 15268863 0 Translocation 0