FN2711-S-1 Chr1 17809437 17809437 0 0 Insertion 8 upstream_gene_variant HET FN2711-S-1 Chr1 21884557 21884562 0 0 Deletion 5 INTERGENIC HET FN2711-S-1 Chr1 27781867 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g48446 no apical meristem protein, putative, expressed FN2711-S-1 Chr1 28936393 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2711-S-1 Chr1 28936400 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2711-S-1 Chr1 29064812 29064817 0 0 Deletion 5 INTERGENIC HET FN2711-S-1 Chr1 2995450 2995451 0 0 Deletion 1 frameshift_variant HET LOC_Os01g06300 transposon protein, putative, unclassified, expressed FN2711-S-1 Chr1 32150521 32150527 0 0 Deletion 6 INTRON HET FN2711-S-1 Chr1 32282697 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2711-S-1 Chr1 34048320 34048341 0 0 Deletion 21 upstream_gene_variant HET FN2711-S-1 Chr1 40139212 40139213 0 0 Deletion 1 INTRON HOMO FN2711-S-1 Chr1 40189430 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN2711-S-1 Chr1 610564 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr10 18584896 18584902 0 0 Deletion 6 INTERGENIC HOMO FN2711-S-1 Chr10 18765727 18765728 0 0 Deletion 1 INTERGENIC HOMO FN2711-S-1 Chr10 8115250 8115251 0 0 Deletion 1 intergenic_region HET FN2711-S-1 Chr11 13485820 Chr2 18272186 0 Translocation 0 FN2711-S-1 Chr11 15709691 T-G 0 0 Single Base Substitution 0 INTRON HOMO FN2711-S-1 Chr11 18137701 18137730 0 0 Deletion 29 downstream_gene_variant HET FN2711-S-1 Chr11 18341428 G-A 0 0 Single Base Substitution 0 INTRON HET FN2711-S-1 Chr11 20878014 20878014 0 0 Insertion 2 upstream_gene_variant HET FN2711-S-1 Chr11 25148238 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr11 26932200 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr11 6149548 6149548 0 0 Insertion 1 upstream_gene_variant HET FN2711-S-1 Chr12 12171956 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr12 19407505 A-C 0 0 Single Base Substitution 0 INTRON HET FN2711-S-1 Chr12 22784978 22784984 0 0 Deletion 6 UTR_5_PRIME HET FN2711-S-1 Chr12 26485890 C-T 0 0 Single Base Substitution 0 INTRON HET FN2711-S-1 Chr12 4526680 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr12 7437718 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g13330 retrotransposon protein, putative, unclassified, expressed FN2711-S-1 Chr12 7564927 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr12 9830057 9830057 0 0 Insertion 1 upstream_gene_variant HET FN2711-S-1 Chr12 9870385 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr2 10418647 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr2 12913779 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr2 13441847 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g22530 retrotransposon protein, putative, Ty3-gypsy subclass FN2711-S-1 Chr2 22546298 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2711-S-1 Chr2 22656428 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr2 26790930 26790931 0 0 Deletion 1 INTERGENIC HET FN2711-S-1 Chr2 28876342 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2711-S-1 Chr3 16346075 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2711-S-1 Chr3 18175295 18175295 0 0 Insertion 1 frameshift_variant HET LOC_Os03g31770 transposon protein, putative, unclassified FN2711-S-1 Chr3 18517840 18517841 0 0 Deletion 1 upstream_gene_variant HET FN2711-S-1 Chr3 1893609 G-C 0 0 Single Base Substitution 0 INTRON HET FN2711-S-1 Chr3 19681642 19681645 0 0 Deletion 3 upstream_gene_variant HET FN2711-S-1 Chr3 21069003 21069003 0 0 Insertion 12 upstream_gene_variant HET FN2711-S-1 Chr3 22496672 23339556 0 0 Inversion 842884 FN2711-S-1 Chr3 24169957 C-T 0 0 Single Base Substitution 0 INTRON HET FN2711-S-1 Chr3 24504224 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr3 27434028 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2711-S-1 Chr3 28004083 28004090 0 0 Deletion 7 INTRON HET FN2711-S-1 Chr3 30745197 30745197 0 0 Insertion 76 upstream_gene_variant FN2711-S-1 Chr4 16642672 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr4 28125709 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr4 28270675 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr4 32238116 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr4 33073753 C-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2711-S-1 Chr4 3958548 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr4 433409 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g01640 expressed protein FN2711-S-1 Chr4 5789907 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr4 6015909 6015929 0 0 Deletion 20 upstream_gene_variant HET FN2711-S-1 Chr5 10196408 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr5 11353727 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr5 13863646 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr5 21148018 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2711-S-1 Chr5 25676760 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr5 7889359 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr6 10453536 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr6 12736363 12736366 0 0 Deletion 3 INTERGENIC HOMO FN2711-S-1 Chr6 16002473 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2711-S-1 Chr6 16913337 16913345 0 0 Deletion 8 FRAME_SHIFT HOMO LOC_Os06g29490 expressed protein FN2711-S-1 Chr6 1696576 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2711-S-1 Chr6 20520242 Chr1 878755 0 Translocation 0 FN2711-S-1 Chr6 25752834 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr6 7949681 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g14250 transposon protein, putative, unclassified, expressed FN2711-S-1 Chr7 12791801 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr7 14189955 14189956 0 0 Deletion 1 downstream_gene_variant HET FN2711-S-1 Chr7 18108171 G-A 0 0 Single Base Substitution 0 INTRON HET FN2711-S-1 Chr7 3737424 G-T 0 0 Single Base Substitution 0 INTRON HET FN2711-S-1 Chr7 4630759 C-T 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os07g08900 retrotransposon protein, putative, unclassified, expressed FN2711-S-1 Chr7 974875 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr8 17004164 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2711-S-1 Chr8 17004165 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2711-S-1 Chr8 17761225 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr8 19541521 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr8 21062401 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr8 22518838 C-T 0 0 Single Base Substitution 0 INTRON HET FN2711-S-1 Chr8 23034661 23034682 0 0 Deletion 21 INTRON HOMO FN2711-S-1 Chr8 27074635 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr8 4777945 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr8 6236307 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr8 7463418 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2711-S-1 Chr9 12736976 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2711-S-1 Chr9 14134871 Chr8 23098805 0 Translocation 0 FN2711-S-1 Chr9 15981433 15981437 0 0 Deletion 4 upstream_gene_variant HET FN2711-S-1 Chr9 2833432 2833433 0 0 Deletion 1 intergenic_region HET FN2711-S-1 Chr9 7356049 7356916 0 0 Deletion 867 upstream_gene_variant HET FN2711-S-1 Chr9 8498045 8498045 0 0 Insertion 1 frameshift_variant HET LOC_Os09g14390 transposon protein, putative, CACTA, En/Spm sub-class, expressed