FN2714-S Chr1 11559019 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2714-S Chr1 23210113 23210113 0 0 Insertion 4 downstream_gene_variant HET FN2714-S Chr1 26826808 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr1 34522818 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr1 42073721 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr10 12604490 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g24560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2714-S Chr10 14863025 14863026 0 0 Deletion 1 downstream_gene_variant HET FN2714-S Chr10 21909551 G-A 0 0 Single Base Substitution 0 INTRON HET FN2714-S Chr10 5080053 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr10 6833638 Chr6 18384660 0 Translocation 0 FN2714-S Chr11 11815349 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os11g20420 retrotransposon protein, putative, unclassified, expressed FN2714-S Chr11 12667050 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr11 13327173 G-A 0 0 Single Base Substitution 0 INTRON HET FN2714-S Chr11 13568674 13568674 0 0 Insertion 1 downstream_gene_variant HET FN2714-S Chr11 15465476 Chr1 41568841 0 Translocation 0 FN2714-S Chr11 19287995 19561891 0 0 Inversion 273896 FN2714-S Chr11 19443579 19460301 0 0 Inversion 16722 FN2714-S Chr11 19561882 19580201 0 0 Inversion 18319 FN2714-S Chr11 20352001 20385000 0 0 Deletion 32999 LOC_Os11g34740 hypothetical protein FN2714-S Chr11 20352001 20385000 0 0 Deletion 32999 LOC_Os11g34750 ABC1 family domain containing protein, putative, expressed FN2714-S Chr11 20352001 20385000 0 0 Deletion 32999 LOC_Os11g34760 MMP37-like protein, mitochondrial precursor, putative, expressed FN2714-S Chr11 20352001 20385000 0 0 Deletion 32999 LOC_Os11g34770 maf, putative, expressed FN2714-S Chr11 20352001 20385000 0 0 Deletion 32999 LOC_Os11g34780 globulin 2, putative, expressed FN2714-S Chr11 20352001 20385000 0 0 Deletion 32999 LOC_Os11g34790 expressed protein FN2714-S Chr11 20352001 20385000 0 0 Deletion 32999 LOC_Os11g34824 expressed protein FN2714-S Chr11 5756374 Chr1 31898866 0 Translocation 0 LOC_Os11g10520 dehydrogenase, putative, expressed FN2714-S Chr11 5756424 Chr1 31897578 0 Translocation 0 LOC_Os11g10520 dehydrogenase, putative, expressed FN2714-S Chr11 6603603 Chr3 664990 0 Translocation 0 FN2714-S Chr11 926269 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g02780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2714-S Chr12 15683807 15683808 0 0 Deletion 1 upstream_gene_variant HET FN2714-S Chr12 16158814 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr12 18566350 Chr3 15160099 0 Translocation 0 FN2714-S Chr12 2109749 Chr9 9468868 0 Translocation 0 LOC_Os12g04910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2714-S Chr12 24097878 24097878 0 0 Insertion 2 intergenic_region HET FN2714-S Chr12 8260618 8260626 0 0 Deletion 8 upstream_gene_variant HET FN2714-S Chr2 10724682 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr2 14329557 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr2 20537786 G-A 0 0 Single Base Substitution 0 INTRON HET FN2714-S Chr2 20895932 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr2 22419181 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr2 32415787 32415791 0 0 Deletion 4 INTERGENIC HOMO FN2714-S Chr2 33038448 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g53960 CXE carboxylesterase, putative, expressed FN2714-S Chr3 10937982 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr3 15029788 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g26280 expressed protein FN2714-S Chr3 16317897 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr3 24090001 24112000 0 0 Deletion 21999 LOC_Os03g43210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2714-S Chr3 24090001 24112000 0 0 Deletion 21999 LOC_Os03g43220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2714-S Chr3 24090001 24112000 0 0 Deletion 21999 LOC_Os03g43230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2714-S Chr3 24090001 24112000 0 0 Deletion 21999 LOC_Os03g43235 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2714-S Chr3 24090001 24112000 0 0 Deletion 21999 LOC_Os03g43240 retrotransposon protein, putative, Ty3-gypsy subclass FN2714-S Chr3 24090001 24112000 0 0 Deletion 21999 LOC_Os03g43770 OsFBX97 - F-box domain containing protein, expressed FN2714-S Chr3 28083227 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr3 30377951 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr3 32260104 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr3 7706778 7706778 0 0 Insertion 1 frameshift_variant HET LOC_Os03g14205 expressed protein FN2714-S Chr4 10761252 10761253 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os04g19340 retrotransposon protein, putative, unclassified, expressed FN2714-S Chr4 14846979 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr4 1587853 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr4 21923782 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2714-S Chr4 23219583 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr4 24314201 A-G 0 0 Single Base Substitution 0 INTRON HET FN2714-S Chr4 25220379 25220441 0 0 Deletion 62 downstream_gene_variant HET FN2714-S Chr4 35497981 Chr1 42743842 0 Translocation 0 FN2714-S Chr4 4953974 4953974 0 0 Insertion 1 upstream_gene_variant HET FN2714-S Chr4 6706688 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g12170 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2714-S Chr4 8751430 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g16120 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2714-S Chr4 8850262 8850263 0 0 Deletion 1 upstream_gene_variant HET FN2714-S Chr5 10096998 10097000 0 0 Deletion 2 upstream_gene_variant HET FN2714-S Chr5 10705316 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr5 10705320 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr5 25687327 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr5 29855358 29855712 0 0 Deletion 354 intergenic_region HET FN2714-S Chr5 3543878 Chr3 13563773 0 Translocation 0 FN2714-S Chr5 8589700 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr6 14476682 14476686 0 0 Deletion 4 downstream_gene_variant HET FN2714-S Chr6 15307702 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr6 15971205 15971205 0 0 Insertion 8 intron_variant HET FN2714-S Chr6 20343644 Chr4 13171073 0 Translocation 0 FN2714-S Chr6 2560925 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g05660 NAP domain containing protein, putative, expressed FN2714-S Chr6 26105902 C-G 0 0 Single Base Substitution 0 INTRON HOMO FN2714-S Chr6 30712942 30712943 0 0 Deletion 1 intergenic_region HET FN2714-S Chr6 994243 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2714-S Chr7 11660419 Chr6 3229970 0 Translocation 0 LOC_Os06g06840 transposon protein, putative, unclassified, expressed FN2714-S Chr7 11660419 Chr6 3229970 0 Translocation 0 LOC_Os07g20200 retrotransposon protein, putative, unclassified, expressed FN2714-S Chr7 11834401 11834402 0 0 Deletion 1 upstream_gene_variant HET FN2714-S Chr7 21788771 21788785 0 0 Deletion 14 UTR_3_PRIME HOMO FN2714-S Chr7 26878267 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr7 27216921 G-A 0 0 Single Base Substitution 0 INTRON HET FN2714-S Chr7 27216922 G-A 0 0 Single Base Substitution 0 INTRON HET FN2714-S Chr7 2877918 Chr6 26188660 0 Translocation 0 FN2714-S Chr7 4604537 Chr1 7703254 0 Translocation 0 FN2714-S Chr7 9296576 9296576 0 0 Insertion 2 INTERGENIC HET FN2714-S Chr7 9666603 9666604 0 0 Deletion 1 upstream_gene_variant HET FN2714-S Chr8 15720756 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr8 16945564 16945566 0 0 Deletion 2 upstream_gene_variant HET FN2714-S Chr8 20336255 Chr4 2842147 0 Translocation 0 FN2714-S Chr8 2606293 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2714-S Chr8 27229104 27229124 0 0 Deletion 20 INTERGENIC HET FN2714-S Chr8 7269088 7269088 0 0 Insertion 1 upstream_gene_variant HET FN2714-S Chr8 8303236 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN2714-S Chr9 10373260 Chr2 17573565 0 Translocation 0 FN2714-S Chr9 10852941 A-G 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO FN2714-S Chr9 11035779 11035791 0 0 Deletion 12 INTRON HOMO FN2714-S Chr9 13377384 13377385 0 0 Deletion 1 upstream_gene_variant HET FN2714-S Chr9 2318979 Chr2 16818229 0 Translocation 0 FN2714-S Chr9 6168442 6168448 0 0 Deletion 6 CODON_DELETION HOMO LOC_Os09g11130 hypothetical protein