FN2715-S Chr1 16494888 A-T 0 0 Single Base Substitution 0 HET FN2715-S Chr1 16494888 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr1 17987967 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr1 20837887 20837948 0 0 Deletion 61 upstream_gene_variant HET FN2715-S Chr1 21322202 21322202 0 0 Insertion 1 downstream_gene_variant HET FN2715-S Chr1 22425821 22425821 0 0 Insertion 1 upstream_gene_variant HET FN2715-S Chr1 24320932 24320933 0 0 Deletion 1 Homo FN2715-S Chr1 24320932 24320933 0 0 Deletion 1 INTERGENIC HOMO FN2715-S Chr1 24625957 A-G 0 0 Single Base Substitution 0 HET FN2715-S Chr1 28967030 C-T 0 0 Single Base Substitution 0 HET FN2715-S Chr1 36294544 36294544 0 0 Insertion 16 downstream_gene_variant HET FN2715-S Chr1 36577128 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g63120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2715-S Chr1 41169498 G-A 0 0 Single Base Substitution 0 HET FN2715-S Chr1 41169498 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr1 7819929 C-A 0 0 Single Base Substitution 0 HET FN2715-S Chr1 7861415 7861419 0 0 Deletion 4 upstream_gene_variant HET FN2715-S Chr10 11524848 Chr3 19252184 0 Translocation 0 FN2715-S Chr10 12201931 Chr7 17150974 0 Translocation 0 FN2715-S Chr10 1353650 G-A 0 0 Single Base Substitution 0 Homo FN2715-S Chr10 1353650 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2715-S Chr10 142035 C-A 0 0 Single Base Substitution 0 HET FN2715-S Chr10 18195069 Chr9 3016434 0 Translocation 0 FN2715-S Chr10 18195069 Chr9 3016434 0 Translocation 0 LOC_Os09g06400 retrotransposon protein, putative, unclassified, expressed FN2715-S Chr10 20488813 G-C 0 0 Single Base Substitution 0 HET FN2715-S Chr10 20488813 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2715-S Chr10 21822128 21822128 0 0 Insertion 1 upstream_gene_variant HET FN2715-S Chr10 3478370 3478371 0 0 Deletion 1 INTERGENIC HOMO FN2715-S Chr10 3914015 A-G 0 0 Single Base Substitution 0 HET FN2715-S Chr10 4422789 4422789 0 0 Insertion 1 intron_variant HET FN2715-S Chr10 670843 C-T 0 0 Single Base Substitution 0 HET FN2715-S Chr10 6889707 6889726 0 0 Insertion 19 HET FN2715-S Chr10 9679924 C-T 0 0 Single Base Substitution 0 HET FN2715-S Chr10 9841160 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g19310 transposon protein, putative, CACTA, En/Spm sub-class FN2715-S Chr11 23859421 G-A 0 0 Single Base Substitution 0 HET FN2715-S Chr11 27332789 C-A 0 0 Single Base Substitution 0 Homo FN2715-S Chr11 27332789 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2715-S Chr11 27843437 C-G 0 0 Single Base Substitution 0 HET FN2715-S Chr11 27850830 Chr1 3225345 0 Translocation 0 LOC_Os01g06790 disease resistance protein, putative, expressed FN2715-S Chr11 27850830 Chr1 3225345 0 Translocation 0 LOC_Os11g46010 retrotransposon protein, putative, unclassified, expressed FN2715-S Chr11 28003589 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g46240 retrotransposon protein, putative, unclassified, expressed FN2715-S Chr11 28003589 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os11g46240 retrotransposon protein, putative, unclassified, expressed FN2715-S Chr11 28348469 Chr1 23459456 0 Translocation 0 FN2715-S Chr11 28430566 Chr8 5481931 0 Translocation 0 FN2715-S Chr11 3134868 C-T 0 0 Single Base Substitution 0 HET FN2715-S Chr11 493845 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os11g01920 retrotransposon protein, putative, unclassified, expressed FN2715-S Chr11 5131411 Chr8 2543738 0 Translocation 0 FN2715-S Chr11 765546 A-G 0 0 Single Base Substitution 0 HET FN2715-S Chr11 8498812 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g15100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2715-S Chr11 8498812 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os11g15100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2715-S Chr12 18084217 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr12 18133661 18133661 0 0 Insertion 1 upstream_gene_variant HET FN2715-S Chr12 19102087 Chr5 4729804 0 Translocation 0 FN2715-S Chr12 19105199 Chr3 14531802 0 Translocation 0 FN2715-S Chr12 2792086 2792086 0 0 Insertion 1 downstream_gene_variant HET FN2715-S Chr12 321754 Chr11 305572 0 Translocation 0 FN2715-S Chr12 561155 629583 0 0 Inversion 0 LOC_Os12g01940 expressed protein FN2715-S Chr12 561155 629583 0 0 Inversion 0 LOC_Os12g02094 saposin-like type B, region 1 family protein, putative, expressed FN2715-S Chr12 561155 629583 0 0 Inversion 68428 LOC_Os12g01940 expressed protein FN2715-S Chr12 561176 749590 0 0 Inversion 0 LOC_Os12g01940 expressed protein FN2715-S Chr12 561176 749590 0 0 Inversion 188414 FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02100 expressed protein FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02105 LTPL58 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02120 dual specificity protein phosphatase, putative, expressed FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02130 expressed protein FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02140 hypothetical protein FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02150 expressed protein FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02160 expressed protein FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02170 retrotransposon protein, putative, SINE subclass, expressed FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02180 expressed protein FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02200 CAMK_KIN1/SNF1/Nim1_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02210 RING finger protein, putative, expressed FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02220 zinc finger, C3HC4 type domain containing protein, expressed FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02230 expressed protein FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02240 expressed protein FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02250 STE_PAK_Ste20_Slob_Wnk.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02260 nucleotidyltransferase, putative, expressed FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02270 transposon protein, putative, unclassified, expressed FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02280 pentatricopeptide, putative, expressed FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02290 LTPL23 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02300 LTPL26 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02310 LTPL11 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02320 LTPL12 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2715-S Chr12 628001 750000 0 0 Deletion 121999 LOC_Os12g02330 LTPL13 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02094 saposin-like type B, region 1 family protein, putative, expressed FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02100 expressed protein FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02105 LTPL58 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02120 dual specificity protein phosphatase, putative, expressed FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02130 expressed protein FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02140 hypothetical protein FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02150 expressed protein FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02160 expressed protein FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02170 retrotransposon protein, putative, SINE subclass, expressed FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02180 expressed protein FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02200 CAMK_KIN1/SNF1/Nim1_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02210 RING finger protein, putative, expressed FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02220 zinc finger, C3HC4 type domain containing protein, expressed FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02230 expressed protein FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02240 expressed protein FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02250 STE_PAK_Ste20_Slob_Wnk.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02260 nucleotidyltransferase, putative, expressed FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02270 transposon protein, putative, unclassified, expressed FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02280 pentatricopeptide, putative, expressed FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02290 LTPL23 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02300 LTPL26 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02310 LTPL11 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02320 LTPL12 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2715-S Chr12 629001 747000 0 0 Deletion 117999 LOC_Os12g02330 LTPL13 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2715-S Chr12 6981603 Chr3 2404419 0 Translocation 0 LOC_Os12g12664 expressed protein FN2715-S Chr12 748920 Chr7 13614527 0 Translocation 0 FN2715-S Chr12 748920 Chr7 13614527 0 Translocation 0 LOC_Os07g24020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2715-S Chr12 749587 Chr7 13615241 0 Translocation 0 FN2715-S Chr12 749587 Chr7 13615241 0 Translocation 0 LOC_Os07g24020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2715-S Chr12 8315161 8315162 0 0 Deletion 1 upstream_gene_variant HET FN2715-S Chr2 1111626 C-G 0 0 Single Base Substitution 0 HET FN2715-S Chr2 15696436 15696446 0 0 Deletion 10 Homo FN2715-S Chr2 15696436 15696446 0 0 Deletion 10 INTERGENIC HET FN2715-S Chr2 15799469 C-T 0 0 Single Base Substitution 0 HET FN2715-S Chr2 15799469 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr2 17676786 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g29720 cytochrome P450, putative, expressed FN2715-S Chr2 17676786 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os02g29720 cytochrome P450, putative, expressed FN2715-S Chr2 26126958 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2715-S Chr2 27310001 27358000 0 0 Deletion 47999 LOC_Os02g45070 PINHEAD, putative, expressed FN2715-S Chr2 27310001 27358000 0 0 Deletion 47999 LOC_Os02g45080 MYB family transcription factor, putative, expressed FN2715-S Chr2 27310001 27358000 0 0 Deletion 47999 LOC_Os02g45090 expressed protein FN2715-S Chr2 27310001 27358000 0 0 Deletion 47999 LOC_Os02g45100 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed FN2715-S Chr2 27310001 27358000 0 0 Deletion 47999 LOC_Os02g45770 OsMADS6 - MADS-box family gene with MIKCc type-box, expressed FN2715-S Chr2 27315001 27358000 0 0 Deletion 42999 LOC_Os02g45054 ZOS2-15 - C2H2 zinc finger protein, expressed FN2715-S Chr2 27315001 27358000 0 0 Deletion 42999 LOC_Os02g45070 PINHEAD, putative, expressed FN2715-S Chr2 27315001 27358000 0 0 Deletion 42999 LOC_Os02g45080 MYB family transcription factor, putative, expressed FN2715-S Chr2 27315001 27358000 0 0 Deletion 42999 LOC_Os02g45090 expressed protein FN2715-S Chr2 27315001 27358000 0 0 Deletion 42999 LOC_Os02g45100 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed FN2715-S Chr2 27625001 27645000 0 0 Deletion 19999 FN2715-S Chr2 27625001 27647000 0 0 Deletion 21999 LOC_Os02g45440 expressed protein FN2715-S Chr2 28883544 28883545 0 0 Deletion 1 INTERGENIC HET FN2715-S Chr2 30620881 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr2 30640155 30640156 0 0 Deletion 1 upstream_gene_variant HET FN2715-S Chr2 31827691 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g51980 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2715-S Chr2 6893754 6893755 0 0 Deletion 1 downstream_gene_variant HET FN2715-S Chr2 8759149 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr2 981648 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g02660 retrotransposon protein, putative, unclassified, expressed FN2715-S Chr3 12912504 C-A 0 0 Single Base Substitution 0 HET FN2715-S Chr3 13027045 13027045 0 0 Insertion 4 INTERGENIC HET FN2715-S Chr3 13027045 13027049 0 0 Insertion 4 HET FN2715-S Chr3 16709920 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr3 24126108 T-C 0 0 Single Base Substitution 0 INTRON HET FN2715-S Chr3 28866241 28866243 0 0 Deletion 2 HET FN2715-S Chr3 35006865 T-C 0 0 Single Base Substitution 0 HET FN2715-S Chr3 35006865 T-C 0 0 Single Base Substitution 0 INTRON HET FN2715-S Chr3 35300875 35300876 0 0 Deletion 1 downstream_gene_variant HET FN2715-S Chr3 35498280 G-T 0 0 Single Base Substitution 0 HET FN2715-S Chr3 35498280 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr3 35498293 T-A 0 0 Single Base Substitution 0 HET FN2715-S Chr3 35498293 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr3 7180630 7180636 0 0 Insertion 6 HET FN2715-S Chr3 775519 T-G 0 0 Single Base Substitution 0 HET FN2715-S Chr3 775519 T-G 0 0 Single Base Substitution 0 INTRON HET FN2715-S Chr4 13556012 G-A 0 0 Single Base Substitution 0 HET FN2715-S Chr4 1406427 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g03300 retrotransposon protein, putative, unclassified, expressed FN2715-S Chr4 14258771 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr4 16259071 16259072 0 0 Deletion 1 frameshift_variant HET LOC_Os04g27500 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2715-S Chr4 16859431 C-A 0 0 Single Base Substitution 0 HET FN2715-S Chr4 18708304 18708305 0 0 Deletion 1 HET FN2715-S Chr4 19115751 19115751 0 0 Insertion 4 downstream_gene_variant HET FN2715-S Chr4 19787876 G-A 0 0 Single Base Substitution 0 HET FN2715-S Chr4 19787876 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr4 23452239 G-A 0 0 Single Base Substitution 0 HET FN2715-S Chr4 23720659 G-T 0 0 Single Base Substitution 0 INTRON HET FN2715-S Chr4 2631922 2631922 0 0 Insertion 1 upstream_gene_variant HET FN2715-S Chr4 30957968 Chr1 35222264 0 Translocation 0 FN2715-S Chr4 31052968 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr4 33352948 G-A 0 0 Single Base Substitution 0 HET FN2715-S Chr4 34548856 T-C 0 0 Single Base Substitution 0 HET FN2715-S Chr4 7859118 Chr2 21394561 0 Translocation 0 FN2715-S Chr4 9654766 A-C 0 0 Single Base Substitution 0 HET FN2715-S Chr4 9654766 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr5 12387736 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g21060 expressed protein FN2715-S Chr5 17836577 G-A 0 0 Single Base Substitution 0 HET FN2715-S Chr5 21468185 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g36200 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2715-S Chr5 21545296 21545323 0 0 Deletion 27 upstream_gene_variant HET FN2715-S Chr5 22372783 G-A 0 0 Single Base Substitution 0 HET FN2715-S Chr5 22372783 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2715-S Chr5 23842832 23842838 0 0 Deletion 6 upstream_gene_variant HET FN2715-S Chr5 26519433 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr5 27768207 27768212 0 0 Deletion 5 HET FN2715-S Chr5 29642874 C-T 0 0 Single Base Substitution 0 HET FN2715-S Chr5 29642874 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr5 4044435 4044442 0 0 Deletion 7 HET FN2715-S Chr5 4044435 4044442 0 0 Deletion 7 UTR_5_PRIME HET FN2715-S Chr5 4433346 C-T 0 0 Single Base Substitution 0 Homo FN2715-S Chr5 4433346 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2715-S Chr6 10800746 Chr4 16768921 0 Translocation 0 FN2715-S Chr6 12353668 T-A 0 0 Single Base Substitution 0 INTRON HET FN2715-S Chr6 13332850 13332851 0 0 Deletion 1 HET FN2715-S Chr6 1483429 Chr1 3192780 0 Translocation 0 FN2715-S Chr6 15428870 15429025 0 0 Deletion 155 intergenic_region HET FN2715-S Chr6 15615027 Chr3 25764416 0 Translocation 0 FN2715-S Chr6 15955360 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g28090 retrotransposon protein, putative, unclassified, expressed FN2715-S Chr6 16041170 16041170 0 0 Insertion 2 upstream_gene_variant HET FN2715-S Chr6 17047476 C-T 0 0 Single Base Substitution 0 HET FN2715-S Chr6 17084368 17084419 0 0 Deletion 51 frameshift_variant&splice_acceptor_variant&splice_region_variant&intron_variant HET LOC_Os06g29750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2715-S Chr6 23042479 Chr3 3707180 0 Translocation 0 LOC_Os03g07270 glycine-rich cell wall protein, putative, expressed FN2715-S Chr6 24925476 24925477 0 0 Deletion 1 upstream_gene_variant HET FN2715-S Chr6 25377852 25377852 0 0 Insertion 1 upstream_gene_variant HET FN2715-S Chr6 29095453 29095454 0 0 Deletion 1 upstream_gene_variant HET FN2715-S Chr6 6137972 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr7 10390968 10390970 0 0 Deletion 2 Homo FN2715-S Chr7 10390968 10390970 0 0 Deletion 2 INTERGENIC HOMO FN2715-S Chr7 13632907 13632908 0 0 Deletion 1 intergenic_region HET FN2715-S Chr7 13789093 13789094 0 0 Deletion 1 upstream_gene_variant HET FN2715-S Chr7 14912354 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr7 15550437 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr7 18519318 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr7 19705859 19705860 0 0 Deletion 1 upstream_gene_variant HET FN2715-S Chr7 26012668 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr7 26841027 26841028 0 0 Deletion 1 upstream_gene_variant HET FN2715-S Chr7 4200893 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g08240 ZmEBE-1 protein, putative, expressed FN2715-S Chr7 4967600 G-T 0 0 Single Base Substitution 0 HET FN2715-S Chr7 4967600 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr7 502927 A-T 0 0 Single Base Substitution 0 HET FN2715-S Chr7 502927 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr7 5041692 5041692 0 0 Insertion 1 upstream_gene_variant HET FN2715-S Chr7 8429714 8429715 0 0 Deletion 1 upstream_gene_variant HET FN2715-S Chr7 9359689 9359690 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os07g16054 hypothetical protein FN2715-S Chr7 9793142 9793143 0 0 Deletion 1 upstream_gene_variant HET FN2715-S Chr8 13583682 13583685 0 0 Deletion 3 upstream_gene_variant HET FN2715-S Chr8 16298191 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr8 16840083 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr8 16973994 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr8 18045518 18045529 0 0 Deletion 11 upstream_gene_variant HET FN2715-S Chr8 18073683 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g29490 retrotransposon protein, putative, unclassified, expressed FN2715-S Chr8 20160668 Chr6 19700126 0 Translocation 0 LOC_Os08g32540 cyclin, putative, expressed FN2715-S Chr8 21445582 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr8 22388823 Chr2 16788107 0 Translocation 0 LOC_Os02g28400 retrotransposon protein, putative, unclassified, expressed FN2715-S Chr8 22388823 Chr2 16788107 0 Translocation 0 LOC_Os08g35520 retrotransposon protein, putative, unclassified, expressed FN2715-S Chr8 23345956 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr8 2831370 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr8 4898554 T-G 0 0 Single Base Substitution 0 Homo FN2715-S Chr8 4898554 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2715-S Chr8 6386098 6386099 0 0 Deletion 1 Homo FN2715-S Chr8 6386098 6386099 0 0 Deletion 1 INTERGENIC HOMO FN2715-S Chr8 6443606 6443634 0 0 Deletion 28 intron_variant HET FN2715-S Chr8 920546 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g02350 expressed protein FN2715-S Chr9 1383674 1383674 0 0 Insertion 1 frameshift_variant HET LOC_Os09g02950 retrotransposon protein, putative, unclassified, expressed FN2715-S Chr9 14126947 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g23750 expressed protein FN2715-S Chr9 14215712 14215713 0 0 Deletion 1 upstream_gene_variant HET FN2715-S Chr9 14486469 Chr6 5970921 0 Translocation 0 FN2715-S Chr9 1649877 G-T 0 0 Single Base Substitution 0 Homo FN2715-S Chr9 1649877 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2715-S Chr9 18820978 A-T 0 0 Single Base Substitution 0 HET FN2715-S Chr9 18820978 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2715-S Chr9 20200260 Chr6 14069748 0 Translocation 0 FN2715-S Chr9 21922234 G-A 0 0 Single Base Substitution 0 HET FN2715-S Chr9 245584 T-G 0 0 Single Base Substitution 0 Homo FN2715-S Chr9 245584 T-G 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN2715-S Chr9 5503737 5503739 0 0 Deletion 2 HET FN2715-S Chr9 8845257 8845258 0 0 Deletion 1 downstream_gene_variant HET