FN2719-S Chr1 14482109 14482109 0 0 Insertion 14 upstream_gene_variant HET FN2719-S Chr1 20619004 20619006 0 0 Deletion 2 upstream_gene_variant HET FN2719-S Chr1 22729164 22729181 0 0 Deletion 17 Homo FN2719-S Chr1 22729164 22729181 0 0 Deletion 17 INTERGENIC HOMO FN2719-S Chr1 27426830 27426831 0 0 Deletion 1 upstream_gene_variant HET FN2719-S Chr1 39977473 39977480 0 0 Deletion 7 upstream_gene_variant HET FN2719-S Chr1 4726833 C-T 0 0 Single Base Substitution 0 HET FN2719-S Chr1 8131394 8131394 0 0 Insertion 2 upstream_gene_variant HET FN2719-S Chr1 9376583 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2719-S Chr1 9853058 G-A 0 0 Single Base Substitution 0 Homo FN2719-S Chr1 9853058 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2719-S Chr10 13690425 C-A 0 0 Single Base Substitution 0 HET FN2719-S Chr10 14039808 G-T 0 0 Single Base Substitution 0 HET FN2719-S Chr10 19148426 T-A 0 0 Single Base Substitution 0 HET FN2719-S Chr10 19148426 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2719-S Chr10 21500310 C-A 0 0 Single Base Substitution 0 STOP_LOST HET LOC_Os10g40160 retrotransposon protein, putative, Ty3-gypsy subclass FN2719-S Chr10 2265231 Chr9 5503275 0 Translocation 0 FN2719-S Chr10 22711146 22711146 0 0 Insertion 2 INTERGENIC HET FN2719-S Chr10 22711146 22711149 0 0 Insertion 3 HET FN2719-S Chr10 6351727 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr10 6352729 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr10 7145753 7145753 0 0 Insertion 1 upstream_gene_variant HET FN2719-S Chr10 8620598 Chr1 12472002 0 Translocation 0 FN2719-S Chr10 9962926 C-A 0 0 Single Base Substitution 0 HET FN2719-S Chr11 10770342 T-C 0 0 Single Base Substitution 0 HET FN2719-S Chr11 10770342 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr11 13708396 Chr6 11097876 0 Translocation 0 LOC_Os11g24120 expressed protein FN2719-S Chr11 14705596 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g25780 PB1 domain containing protein, expressed FN2719-S Chr11 15342906 A-G 0 0 Single Base Substitution 0 HET FN2719-S Chr11 15342906 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2719-S Chr11 191158 C-T 0 0 Single Base Substitution 0 HET FN2719-S Chr11 19693914 Chr2 5291366 0 Translocation 0 FN2719-S Chr11 21661551 A-G 0 0 Single Base Substitution 0 HET FN2719-S Chr11 21661551 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr11 26487239 G-A 0 0 Single Base Substitution 0 Homo FN2719-S Chr11 26487239 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2719-S Chr11 26709113 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr11 7140700 7140701 0 0 Deletion 1 upstream_gene_variant HET FN2719-S Chr11 7720116 Chr6 4358327 0 Translocation 0 FN2719-S Chr11 8045027 8045028 0 0 Deletion 1 upstream_gene_variant HET FN2719-S Chr11 8785743 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g15510 expressed protein FN2719-S Chr11 9693842 9693844 0 0 Deletion 2 HET FN2719-S Chr12 10886791 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g18800 transposon protein, putative, unclassified, expressed FN2719-S Chr12 10886791 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os12g18800 transposon protein, putative, unclassified, expressed FN2719-S Chr12 12528080 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr12 12883131 Chr10 4481271 0 Translocation 0 FN2719-S Chr12 13344867 13377641 0 0 Inversion 0 FN2719-S Chr12 15187143 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr12 16401920 A-C 0 0 Single Base Substitution 0 HET FN2719-S Chr12 18990627 18990627 0 0 Insertion 2 downstream_gene_variant HET FN2719-S Chr12 22073437 A-T 0 0 Single Base Substitution 0 HET FN2719-S Chr12 22153317 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g36140 retrotransposon protein, putative, unclassified, expressed FN2719-S Chr12 26843549 26843552 0 0 Deletion 3 intergenic_region HET FN2719-S Chr12 2939560 2939560 0 0 Insertion 16 upstream_gene_variant HET FN2719-S Chr12 4584095 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr12 7218020 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g13020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2719-S Chr12 7218020 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os12g13020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2719-S Chr12 7675754 C-T 0 0 Single Base Substitution 0 INTRON HET FN2719-S Chr12 7931834 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr2 10921848 T-C 0 0 Single Base Substitution 0 HET FN2719-S Chr2 10921848 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr2 11590335 11590339 0 0 Insertion 4 HET FN2719-S Chr2 14038746 C-G 0 0 Single Base Substitution 0 HET FN2719-S Chr2 14760085 14760086 0 0 Deletion 1 upstream_gene_variant HET FN2719-S Chr2 22184920 22184921 0 0 Deletion 1 upstream_gene_variant HET FN2719-S Chr2 30639797 30639797 0 0 Insertion 1 upstream_gene_variant HET FN2719-S Chr2 3331307 3331548 0 0 Inversion 0 FN2719-S Chr2 34318762 34318776 0 0 Deletion 14 downstream_gene_variant HET FN2719-S Chr2 35552139 T-C 0 0 Single Base Substitution 0 INTRON HET FN2719-S Chr2 5668969 A-G 0 0 Single Base Substitution 0 HET FN2719-S Chr2 8273654 8273655 0 0 Deletion 1 upstream_gene_variant HET FN2719-S Chr2 8310769 Chr1 31296068 0 Translocation 0 FN2719-S Chr3 14316094 14316096 0 0 Insertion 2 HET FN2719-S Chr3 151486 G-C 0 0 Single Base Substitution 0 HET FN2719-S Chr3 21778063 T-A 0 0 Single Base Substitution 0 HET FN2719-S Chr3 22981035 G-T 0 0 Single Base Substitution 0 HET FN2719-S Chr3 22981035 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr3 28037278 28037278 0 0 Insertion 2 INTRON HET FN2719-S Chr3 28243792 A-G 0 0 Single Base Substitution 0 HET FN2719-S Chr3 28243792 A-G 0 0 Single Base Substitution 0 INTRON HET FN2719-S Chr3 30215260 T-C 0 0 Single Base Substitution 0 Homo FN2719-S Chr3 35081682 35081684 0 0 Deletion 2 upstream_gene_variant HET FN2719-S Chr3 35495343 T-C 0 0 Single Base Substitution 0 HET FN2719-S Chr3 6389490 6389491 0 0 Deletion 1 INTERGENIC HET FN2719-S Chr3 6780070 Chr2 12010625 0 Translocation 0 FN2719-S Chr3 8231517 8231518 0 0 Deletion 1 upstream_gene_variant HET FN2719-S Chr3 8989108 8989109 0 0 Deletion 1 downstream_gene_variant HET FN2719-S Chr4 10943943 10943948 0 0 Deletion 5 Homo FN2719-S Chr4 10943943 10943948 0 0 Deletion 5 INTERGENIC HOMO FN2719-S Chr4 11446264 11446266 0 0 Deletion 2 upstream_gene_variant HET FN2719-S Chr4 13854963 A-G 0 0 Single Base Substitution 0 HET FN2719-S Chr4 14526101 14526103 0 0 Deletion 2 Homo FN2719-S Chr4 14526101 14526103 0 0 Deletion 2 INTERGENIC HOMO FN2719-S Chr4 16368897 A-G 0 0 Single Base Substitution 0 HET FN2719-S Chr4 19728070 19728092 0 0 Deletion 22 downstream_gene_variant HET FN2719-S Chr4 19918787 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr4 27366290 A-G 0 0 Single Base Substitution 0 HET FN2719-S Chr4 27706483 T-A 0 0 Single Base Substitution 0 HET FN2719-S Chr4 28015059 28015059 0 0 Insertion 2 INTRON HET FN2719-S Chr4 28015059 28015061 0 0 Insertion 2 HET FN2719-S Chr4 28627310 C-T 0 0 Single Base Substitution 0 HET FN2719-S Chr4 28627310 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2719-S Chr4 30825491 30825578 0 0 Deletion 87 splice_region_variant HET FN2719-S Chr4 30937156 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr4 31160547 31160548 0 0 Deletion 1 intergenic_region HET FN2719-S Chr4 7526177 7526178 0 0 Deletion 1 downstream_gene_variant HET FN2719-S Chr4 7947891 7947891 0 0 Insertion 1 downstream_gene_variant HET FN2719-S Chr4 8926661 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os04g16420 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2719-S Chr4 8959179 C-T 0 0 Single Base Substitution 0 HET FN2719-S Chr4 8959179 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr5 16545878 A-G 0 0 Single Base Substitution 0 INTRON HET FN2719-S Chr5 16925178 T-A 0 0 Single Base Substitution 0 HET FN2719-S Chr5 16925178 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr5 17844918 C-A 0 0 Single Base Substitution 0 HET FN2719-S Chr5 17844918 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr5 20169241 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr5 28116333 T-C 0 0 Single Base Substitution 0 Homo FN2719-S Chr5 28116333 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2719-S Chr5 29931151 29931151 0 0 Insertion 1 intergenic_region HET FN2719-S Chr5 7065001 7070000 0 0 Deletion 4999 LOC_Os05g12300 expressed protein FN2719-S Chr5 7065001 7070000 0 0 Deletion 4999 LOC_Os05g12610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2719-S Chr6 11010698 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g19350 retrotransposon, putative, centromere-specific, expressed FN2719-S Chr6 13553381 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr6 22483124 22521349 0 0 Inversion 0 FN2719-S Chr6 23731550 C-A 0 0 Single Base Substitution 0 HET FN2719-S Chr6 6823006 Chr4 27350794 0 Translocation 0 LOC_Os06g12590 protein kinase, putative, expressed FN2719-S Chr6 9464981 9464981 0 0 Insertion 7 INTERGENIC HET FN2719-S Chr6 9464981 9464988 0 0 Insertion 7 HET FN2719-S Chr7 11598160 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g19570 expressed protein FN2719-S Chr7 12145719 12145720 0 0 Deletion 1 intergenic_region HET FN2719-S Chr7 12156938 12156939 0 0 Deletion 1 HET FN2719-S Chr7 1288868 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr7 24531915 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2719-S Chr7 25481770 T-A 0 0 Single Base Substitution 0 Homo FN2719-S Chr7 25481770 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2719-S Chr7 6408002 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g11610 transposon protein, putative, unclassified, expressed FN2719-S Chr7 8660769 T-C 0 0 Single Base Substitution 0 HET FN2719-S Chr8 11049434 11049434 0 0 Insertion 1 upstream_gene_variant HET FN2719-S Chr8 16867262 16867262 0 0 Insertion 1 upstream_gene_variant HET FN2719-S Chr8 18170009 T-C 0 0 Single Base Substitution 0 HET FN2719-S Chr8 18170009 T-C 0 0 Single Base Substitution 0 INTRON HET FN2719-S Chr8 19211524 19211524 0 0 Insertion 2 INTERGENIC HET FN2719-S Chr8 19247926 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2719-S Chr8 19910688 G-A 0 0 Single Base Substitution 0 HET FN2719-S Chr8 253466 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g01390 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed FN2719-S Chr8 25576472 25576473 0 0 Deletion 1 intron_variant HET FN2719-S Chr8 26906514 Chr3 25348841 0 Translocation 0 LOC_Os08g42570 plant protein of unknown function domain containing protein, expressed FN2719-S Chr8 6120307 6735411 0 0 Inversion 0 FN2719-S Chr8 6120307 6735411 0 0 Inversion 0 LOC_Os08g11480 expressed protein FN2719-S Chr8 6120307 6735411 0 0 Inversion 615104 LOC_Os08g11480 expressed protein FN2719-S Chr8 6120321 6737000 0 0 Inversion 0 FN2719-S Chr8 6120321 6737000 0 0 Inversion 0 LOC_Os08g11480 expressed protein FN2719-S Chr8 6120321 6737000 0 0 Inversion 616679 FN2719-S Chr9 11816226 Chr2 6533224 0 Translocation 0 FN2719-S Chr9 13448269 Chr8 7145853 0 Translocation 0 LOC_Os08g12130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2719-S Chr9 13448269 Chr8 7145853 0 Translocation 0 LOC_Os09g22230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2719-S Chr9 14315063 14315067 0 0 Insertion 4 HET FN2719-S Chr9 15005716 Chr8 1594438 0 Translocation 0 FN2719-S Chr9 16564127 Chr1 24311693 0 Translocation 0 FN2719-S Chr9 21061546 C-T 0 0 Single Base Substitution 0 HET FN2719-S Chr9 21061546 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2719-S Chr9 5041261 5041262 0 0 Deletion 1 Homo FN2719-S Chr9 5041261 5041262 0 0 Deletion 1 INTERGENIC HOMO