FN2721-S Chr1 11488869 11489376 0 0 Deletion 507 disruptive_inframe_deletion HET LOC_Os01g20200 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2721-S Chr1 16527900 16527905 0 0 Deletion 5 Homo FN2721-S Chr1 19023763 G-A 0 0 Single Base Substitution 0 HET FN2721-S Chr1 25357152 G-C 0 0 Single Base Substitution 0 HET FN2721-S Chr1 30207103 30207104 0 0 Deletion 1 Homo FN2721-S Chr1 30599884 A-C 0 0 Single Base Substitution 0 Homo FN2721-S Chr1 32023918 T-C 0 0 Single Base Substitution 0 Homo FN2721-S Chr1 3892732 G-A 0 0 Single Base Substitution 0 HET FN2721-S Chr1 41526001 41550000 0 0 Deletion 23999 LOC_Os01g71650 glycosyl hydrolases family 17, putative, expressed FN2721-S Chr1 41526001 41550000 0 0 Deletion 23999 LOC_Os01g71660 retrotransposon protein, putative, unclassified, expressed FN2721-S Chr1 41526001 41550000 0 0 Deletion 23999 LOC_Os01g71670 glycosyl hydrolases family 17, putative, expressed FN2721-S Chr1 41526001 41550000 0 0 Deletion 23999 LOC_Os01g71680 glycosyl hydrolases family 17, putative, expressed FN2721-S Chr1 41526001 41550000 0 0 Deletion 23999 LOC_Os01g71690 recA protein, expressed FN2721-S Chr1 41526001 41550000 0 0 Deletion 23999 LOC_Os01g71700 amino acid permease family protein, putative, expressed FN2721-S Chr10 11976634 11976652 0 0 Deletion 18 HET FN2721-S Chr10 15536990 A-T 0 0 Single Base Substitution 0 HET FN2721-S Chr10 16251125 A-G 0 0 Single Base Substitution 0 Homo FN2721-S Chr10 6375977 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os10g11506 retrotransposon protein, putative, unclassified, expressed FN2721-S Chr10 7705833 C-T 0 0 Single Base Substitution 0 HET FN2721-S Chr11 15298100 T-A 0 0 Single Base Substitution 0 HET FN2721-S Chr11 16159965 A-G 0 0 Single Base Substitution 0 Homo FN2721-S Chr11 7040988 C-T 0 0 Single Base Substitution 0 HET FN2721-S Chr11 8133344 8133346 0 0 Insertion 2 HET FN2721-S Chr11 8238788 T-G 0 0 Single Base Substitution 0 HET FN2721-S Chr12 12111302 12111307 0 0 Deletion 5 frameshift_variant Homo LOC_Os12g21540 retrotransposon protein, putative, unclassified, expressed FN2721-S Chr12 13222979 G-A 0 0 Single Base Substitution 0 Homo FN2721-S Chr12 13768488 14129065 0 0 Inversion 0 LOC_Os12g24170 beta-galactosidase precursor, putative, expressed FN2721-S Chr12 13768506 14323361 0 0 Inversion 0 LOC_Os12g24170 beta-galactosidase precursor, putative, expressed FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24680 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24690 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24700 retrotransposon protein, putative, Ty1-copia subclass FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24710 retrotransposon protein, putative, unclassified, expressed FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24730 retrotransposon protein, putative, unclassified, expressed FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24740 retrotransposon protein, putative, unclassified FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24750 retrotransposon protein, putative, Ty3-gypsy subclass FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24770 retrotransposon protein, putative, unclassified, expressed FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24780 retrotransposon protein, putative, unclassified, expressed FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24790 retrotransposon protein, putative, LINE subclass, expressed FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24800 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24810 expressed protein FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24830 retrotransposon protein, putative, Ty3-gypsy subclass FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24840 retrotransposon protein, putative, Ty3-gypsy subclass FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24850 hypothetical protein FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24870 SWIM zinc finger family protein, putative, expressed FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24880 retrotransposon protein, putative, unclassified, expressed FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24890 retrotransposon protein, putative, Ty3-gypsy subclass FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24900 expressed protein FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24910 retrotransposon protein, putative, Ty3-gypsy subclass FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24920 retrotransposon, putative, centromere-specific, expressed FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24930 retrotransposon protein, putative, Ty3-gypsy subclass FN2721-S Chr12 14126001 14324000 0 0 Deletion 197999 LOC_Os12g24940 retrotransposon protein, putative, unclassified FN2721-S Chr12 20402687 G-A 0 0 Single Base Substitution 0 HET FN2721-S Chr12 8273338 C-T 0 0 Single Base Substitution 0 Homo FN2721-S Chr12 9453348 G-T 0 0 Single Base Substitution 0 Homo FN2721-S Chr2 11722189 C-T 0 0 Single Base Substitution 0 Homo FN2721-S Chr2 14345780 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g24730 retrotransposon protein, putative, unclassified, expressed FN2721-S Chr2 20744640 T-C 0 0 Single Base Substitution 0 HET FN2721-S Chr2 25307897 25307983 0 0 Deletion 86 HET FN2721-S Chr2 28494722 28494724 0 0 Deletion 2 Homo FN2721-S Chr2 32028292 G-A 0 0 Single Base Substitution 0 HET FN2721-S Chr2 3322960 A-G 0 0 Single Base Substitution 0 HET FN2721-S Chr2 9244225 9244233 0 0 Insertion 8 HET FN2721-S Chr3 11079542 G-A 0 0 Single Base Substitution 0 Homo FN2721-S Chr3 18620591 G-A 0 0 Single Base Substitution 0 HET FN2721-S Chr3 1944152 1944153 0 0 Deletion 1 HET FN2721-S Chr3 21289192 C-T 0 0 Single Base Substitution 0 HET FN2721-S Chr3 22612598 G-T 0 0 Single Base Substitution 0 HET FN2721-S Chr3 25833971 C-A 0 0 Single Base Substitution 0 HET FN2721-S Chr3 3594468 C-T 0 0 Single Base Substitution 0 HET FN2721-S Chr3 8659151 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g15690 phosphate carrier protein, mitochondrial precursor, putative, expressed FN2721-S Chr4 11843784 11843785 0 0 Deletion 1 HET FN2721-S Chr4 12007415 C-T 0 0 Single Base Substitution 0 HET FN2721-S Chr4 18885922 18885923 0 0 Deletion 1 HET FN2721-S Chr4 26656868 Chr3 16448151 0 Translocation 0 FN2721-S Chr4 27461211 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g46320 inactive receptor kinase At2g26730 precursor, putative, expressed FN2721-S Chr4 33198857 G-A 0 0 Single Base Substitution 0 HET FN2721-S Chr4 6430175 G-T 0 0 Single Base Substitution 0 HET FN2721-S Chr4 9988345 G-A 0 0 Single Base Substitution 0 HET FN2721-S Chr5 17137151 C-T 0 0 Single Base Substitution 0 Homo FN2721-S Chr5 20193624 20193627 0 0 Deletion 3 disruptive_inframe_deletion Homo LOC_Os05g34150 glutathione S-transferase, putative, expressed FN2721-S Chr5 20839914 20839915 0 0 Deletion 1 frameshift_variant HET LOC_Os05g35100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2721-S Chr5 28686428 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os05g50040 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2721-S Chr5 28885305 28885307 0 0 Deletion 2 HET FN2721-S Chr6 10648889 C-G 0 0 Single Base Substitution 0 Homo FN2721-S Chr6 12369945 C-T 0 0 Single Base Substitution 0 Homo FN2721-S Chr6 13235222 13235224 0 0 Deletion 2 Homo FN2721-S Chr6 14368981 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g24510 retrotransposon protein, putative, unclassified FN2721-S Chr6 25489960 T-C 0 0 Single Base Substitution 0 Homo FN2721-S Chr6 28608510 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g47180 retrotransposon protein, putative, unclassified, expressed FN2721-S Chr7 12281597 Chr1 30943066 0 Translocation 0 FN2721-S Chr7 16263373 G-A 0 0 Single Base Substitution 0 HET FN2721-S Chr7 2589886 2589887 0 0 Deletion 1 frameshift_variant HET LOC_Os07g05540 retrotransposon protein, putative, unclassified, expressed FN2721-S Chr7 26283880 C-T 0 0 Single Base Substitution 0 HET FN2721-S Chr7 5674508 6005773 0 0 Inversion 0 FN2721-S Chr7 5674520 6005786 0 0 Inversion 0 FN2721-S Chr7 6375744 6375752 0 0 Deletion 8 Homo FN2721-S Chr7 938135 G-C 0 0 Single Base Substitution 0 HET FN2721-S Chr7 9456293 Chr5 4379871 0 Translocation 0 LOC_Os05g08050 retrotransposon protein, putative, unclassified, expressed FN2721-S Chr7 9456293 Chr5 4379871 0 Translocation 0 LOC_Os07g16210 expressed protein FN2721-S Chr8 10342902 G-A 0 0 Single Base Substitution 0 HET FN2721-S Chr8 1203692 G-A 0 0 Single Base Substitution 0 HET FN2721-S Chr9 12250913 G-A 0 0 Single Base Substitution 0 HET FN2721-S Chr9 15971916 Chr7 10273987 0 Translocation 0 FN2721-S Chr9 15971922 Chr7 10273576 0 Translocation 0 FN2721-S Chr9 18643267 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g30510 glucosyl transferase, putative, expressed FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38060 nicotinate-nucleotide pyrophosphorylase, putative, expressed FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38070 expressed protein FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38080 retrotransposon protein, putative, unclassified, expressed FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38090 expressed protein FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38100 phosphate carrier protein, mitochondrial precursor, putative, expressed FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38104 hypothetical protein FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38110 RING-H2 finger protein, putative, expressed FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38120 expressed protein FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38130 auxin efflux carrier component, putative, expressed FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38150 expressed protein FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38170 expressed protein FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38200 retrotransposon protein, putative, unclassified, expressed FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38210 auxin efflux carrier component, putative, expressed FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38239 sulfotransferase domain containing protein, expressed FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38268 RNA polymerase IV largest subunit, putative, expressed FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38300 OsFBK20 - F-box domain and kelch repeat containing protein, expressed FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38310 pentatricopeptide, putative, expressed FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38320 phytoene synthase, chloroplast precursor, putative, expressed FN2721-S Chr9 21932001 22052000 0 0 Deletion 119999 LOC_Os09g38330 MORN repeat domain containing protein, expressed FN2721-S Chr9 3283698 G-A 0 0 Single Base Substitution 0 HET FN2721-S Chr9 4897294 Chr3 25664335 0 Translocation 0 FN2721-S Chr9 5339006 Chr1 5500458 0 Translocation 0