FN2723-S Chr1 16851299 C-T 0 0 Single Base Substitution 0 HET FN2723-S Chr1 17077485 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr1 18255199 G-A 0 0 Single Base Substitution 0 INTRON HET FN2723-S Chr1 20188117 20188206 0 0 Deletion 89 frameshift_variant HET LOC_Os01g36380 retrotransposon protein, putative, unclassified FN2723-S Chr1 20247758 G-A 0 0 Single Base Substitution 0 HET FN2723-S Chr1 20247758 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr1 22241353 22241359 0 0 Deletion 6 INTERGENIC HET FN2723-S Chr1 30841359 C-T 0 0 Single Base Substitution 0 HET FN2723-S Chr1 30841359 C-T 0 0 Single Base Substitution 0 INTRON HET FN2723-S Chr1 31933798 31933799 0 0 Insertion 1 HET FN2723-S Chr1 32936458 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr1 33576556 33576557 0 0 Deletion 1 upstream_gene_variant HET FN2723-S Chr1 34012468 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr1 40279793 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr1 42997097 42997104 0 0 Deletion 7 downstream_gene_variant HET FN2723-S Chr10 18791917 A-T 0 0 Single Base Substitution 0 HET FN2723-S Chr10 18791917 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr10 18843404 T-A 0 0 Single Base Substitution 0 HET FN2723-S Chr10 19320924 19320931 0 0 Deletion 7 downstream_gene_variant HET FN2723-S Chr10 19494605 19494606 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os10g36430 retrotransposon protein, putative, unclassified, expressed FN2723-S Chr10 22149372 C-T 0 0 Single Base Substitution 0 HET FN2723-S Chr10 325354 G-A 0 0 Single Base Substitution 0 HET FN2723-S Chr10 4512937 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr10 5298646 Chr8 14523301 0 Translocation 0 FN2723-S Chr10 8097551 Chr1 16931745 0 Translocation 0 FN2723-S Chr11 10175029 C-T 0 0 Single Base Substitution 0 HET FN2723-S Chr11 10175029 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr11 11722420 11722421 0 0 Deletion 1 upstream_gene_variant HET FN2723-S Chr11 12761990 C-A 0 0 Single Base Substitution 0 HET FN2723-S Chr11 15613259 Chr9 749691 0 Translocation 0 FN2723-S Chr11 17509681 Chr2 944616 0 Translocation 0 LOC_Os11g30110 disease resistance RPP13-like protein 1, putative, expressed FN2723-S Chr11 17510217 Chr2 944616 0 Translocation 0 FN2723-S Chr11 17583001 17619000 0 0 Deletion 35999 LOC_Os11g30260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2723-S Chr11 17583001 17619000 0 0 Deletion 35999 LOC_Os11g30270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2723-S Chr11 17583001 17619000 0 0 Deletion 35999 LOC_Os11g30280 transposon protein, putative, unclassified FN2723-S Chr11 17583001 17619000 0 0 Deletion 35999 LOC_Os11g30290 PHF5-like protein domain containing protein, expressed FN2723-S Chr11 17583001 17619000 0 0 Deletion 35999 LOC_Os11g30300 expressed protein FN2723-S Chr11 17583001 17619000 0 0 Deletion 35999 LOC_Os11g30310 reticuline oxidase-like protein precursor, putative, expressed FN2723-S Chr11 17583001 17619000 0 0 Deletion 35999 LOC_Os11g30320 expressed protein FN2723-S Chr11 17583001 17619000 0 0 Deletion 35999 LOC_Os11g30340 expressed protein FN2723-S Chr11 17583001 17619000 0 0 Deletion 35999 LOC_Os11g30350 PB1 domain containing protein, expressed FN2723-S Chr11 17583001 17619000 0 0 Deletion 35999 LOC_Os11g32320 CCB1, putative, expressed FN2723-S Chr11 17585001 17618000 0 0 Deletion 32999 LOC_Os11g30250 hypothetical protein FN2723-S Chr11 17585001 17618000 0 0 Deletion 32999 LOC_Os11g30260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2723-S Chr11 17585001 17618000 0 0 Deletion 32999 LOC_Os11g30270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2723-S Chr11 17585001 17618000 0 0 Deletion 32999 LOC_Os11g30280 transposon protein, putative, unclassified FN2723-S Chr11 17585001 17618000 0 0 Deletion 32999 LOC_Os11g30290 PHF5-like protein domain containing protein, expressed FN2723-S Chr11 17585001 17618000 0 0 Deletion 32999 LOC_Os11g30300 expressed protein FN2723-S Chr11 17585001 17618000 0 0 Deletion 32999 LOC_Os11g30310 reticuline oxidase-like protein precursor, putative, expressed FN2723-S Chr11 17585001 17618000 0 0 Deletion 32999 LOC_Os11g30320 expressed protein FN2723-S Chr11 17585001 17618000 0 0 Deletion 32999 LOC_Os11g30340 expressed protein FN2723-S Chr11 17585001 17618000 0 0 Deletion 32999 LOC_Os11g30350 PB1 domain containing protein, expressed FN2723-S Chr11 20993894 20993894 0 0 Insertion 2 INTRON HET FN2723-S Chr11 22081896 C-A 0 0 Single Base Substitution 0 HET FN2723-S Chr11 5743800 Chr10 12207983 0 Translocation 0 FN2723-S Chr11 9943259 G-T 0 0 Single Base Substitution 0 HET FN2723-S Chr12 1023814 A-T 0 0 Single Base Substitution 0 Homo FN2723-S Chr12 1023814 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2723-S Chr12 11921444 11922062 0 0 Inversion 0 FN2723-S Chr12 127738 Chr11 128897 0 Translocation 0 LOC_Os11g01210 HCF152, putative, expressed FN2723-S Chr12 127738 Chr11 128897 0 Translocation 0 LOC_Os12g01210 HCF152, putative, expressed FN2723-S Chr12 13606442 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr12 13924539 T-C 0 0 Single Base Substitution 0 HET FN2723-S Chr12 14508232 C-T 0 0 Single Base Substitution 0 HET FN2723-S Chr12 14508232 C-T 0 0 Single Base Substitution 0 INTRON HET FN2723-S Chr12 15373681 15373682 0 0 Deletion 1 INTERGENIC HET FN2723-S Chr12 15613360 A-G 0 0 Single Base Substitution 0 Homo FN2723-S Chr12 15613360 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2723-S Chr12 16327320 A-G 0 0 Single Base Substitution 0 HET FN2723-S Chr12 16518102 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr12 16898154 16898156 0 0 Deletion 2 INTERGENIC HET FN2723-S Chr12 17096932 17096933 0 0 Insertion 1 frameshift_variant HET LOC_Os12g28920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2723-S Chr12 18801751 18801756 0 0 Deletion 5 HET FN2723-S Chr12 20827807 20827829 0 0 Deletion 22 HET FN2723-S Chr12 20827807 20827829 0 0 Deletion 22 INTERGENIC HET FN2723-S Chr12 24881287 Chr6 15720880 0 Translocation 0 FN2723-S Chr12 24881287 Chr6 15720880 0 Translocation 0 LOC_Os06g27760 peptide methionine sulfoxide reductase msrB, putative, expressed FN2723-S Chr12 24881292 Chr5 12422855 0 Translocation 0 FN2723-S Chr12 24881292 Chr5 12422855 0 Translocation 0 LOC_Os05g21120 retrotransposon protein, putative, unclassified, expressed FN2723-S Chr12 27114959 Chr3 17206796 0 Translocation 0 FN2723-S Chr12 3054935 C-A 0 0 Single Base Substitution 0 HET FN2723-S Chr12 3054935 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr12 5259815 5259816 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os12g09930 retrotransposon protein, putative, unclassified, expressed FN2723-S Chr2 11876071 C-T 0 0 Single Base Substitution 0 HET FN2723-S Chr2 139166 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr2 139168 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr2 15419543 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr2 16312423 C-T 0 0 Single Base Substitution 0 HET FN2723-S Chr2 16312423 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2723-S Chr2 21751281 G-A 0 0 Single Base Substitution 0 HET FN2723-S Chr2 21751281 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr2 23021799 G-A 0 0 Single Base Substitution 0 HET FN2723-S Chr2 2424846 C-G 0 0 Single Base Substitution 0 HET FN2723-S Chr2 2424846 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr2 25476436 25476436 0 0 Insertion 1 downstream_gene_variant HET FN2723-S Chr2 28971528 C-A 0 0 Single Base Substitution 0 INTRON HET FN2723-S Chr2 4287145 G-A 0 0 Single Base Substitution 0 Homo FN2723-S Chr2 4287145 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN2723-S Chr2 4700111 5029761 0 0 Inversion 0 FN2723-S Chr2 4700111 5029761 0 0 Inversion 0 LOC_Os02g09750 lycopene beta cyclase, chloroplast precursor, putative, expressed FN2723-S Chr2 4700111 5029761 0 0 Inversion 329650 LOC_Os02g09750 lycopene beta cyclase, chloroplast precursor, putative, expressed FN2723-S Chr2 4700121 5029775 0 0 Inversion 0 FN2723-S Chr2 4700121 5029775 0 0 Inversion 0 LOC_Os02g09750 lycopene beta cyclase, chloroplast precursor, putative, expressed FN2723-S Chr2 4700121 5029775 0 0 Inversion 329654 LOC_Os02g09750 lycopene beta cyclase, chloroplast precursor, putative, expressed FN2723-S Chr2 6710927 6710927 0 0 Insertion 8 upstream_gene_variant HET FN2723-S Chr2 7832011 7832129 0 0 Deletion 118 intergenic_region HET FN2723-S Chr2 9005438 9005440 0 0 Deletion 2 UTR_3_PRIME HET FN2723-S Chr3 13348650 13348702 0 0 Deletion 52 upstream_gene_variant HET FN2723-S Chr3 15001483 15001485 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os03g26210 helix-loop-helix DNA-binding domain containing protein, expressed FN2723-S Chr3 1519129 G-A 0 0 Single Base Substitution 0 Homo FN2723-S Chr3 1519129 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO FN2723-S Chr3 16812701 Chr1 18860178 0 Translocation 0 FN2723-S Chr3 19759561 19759561 0 0 Insertion 1 upstream_gene_variant HET FN2723-S Chr3 20391081 20391082 0 0 Deletion 1 upstream_gene_variant HET FN2723-S Chr3 21988069 G-T 0 0 Single Base Substitution 0 Homo FN2723-S Chr3 21988069 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2723-S Chr3 2292369 2292369 0 0 Insertion 2 INTERGENIC HET FN2723-S Chr3 28809447 T-G 0 0 Single Base Substitution 0 HET FN2723-S Chr3 34421284 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr3 6340620 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os03g12080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2723-S Chr4 10182469 10182470 0 0 Insertion 1 HET FN2723-S Chr4 12521245 G-A 0 0 Single Base Substitution 0 Homo FN2723-S Chr4 12521245 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2723-S Chr4 12521246 G-A 0 0 Single Base Substitution 0 Homo FN2723-S Chr4 12521246 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2723-S Chr4 12859413 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g22690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2723-S Chr4 15002607 15002608 0 0 Deletion 1 HET FN2723-S Chr4 20382700 C-T 0 0 Single Base Substitution 0 INTRON HET FN2723-S Chr4 2510417 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr4 25590116 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g43250 retrotransposon protein, putative, unclassified, expressed FN2723-S Chr4 26161210 26161218 0 0 Deletion 8 downstream_gene_variant HET FN2723-S Chr4 29806195 29806201 0 0 Deletion 6 INTERGENIC HOMO FN2723-S Chr4 34025892 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os04g57100 retrotransposon protein, putative, unclassified, expressed FN2723-S Chr4 6059245 6059252 0 0 Deletion 7 HET FN2723-S Chr4 6059245 6059252 0 0 Deletion 7 INTERGENIC HET FN2723-S Chr4 6670807 6670808 0 0 Deletion 1 upstream_gene_variant HET FN2723-S Chr5 12230112 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr5 18184354 G-A 0 0 Single Base Substitution 0 HET FN2723-S Chr5 18184354 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2723-S Chr5 22889438 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2723-S Chr5 24410027 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g41720 retrotransposon protein, putative, unclassified, expressed FN2723-S Chr5 26187546 26187558 0 0 Deletion 12 downstream_gene_variant HET FN2723-S Chr5 2750587 C-A 0 0 Single Base Substitution 0 HET FN2723-S Chr5 29486665 T-C 0 0 Single Base Substitution 0 HET FN2723-S Chr6 10117993 Chr5 21218472 0 Translocation 0 FN2723-S Chr6 1026777 1026777 0 0 Insertion 2 INTERGENIC HET FN2723-S Chr6 1026777 1026779 0 0 Insertion 2 HET FN2723-S Chr6 12551051 12551052 0 0 Insertion 1 HET FN2723-S Chr6 13101046 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr6 14457838 Chr4 8094447 0 Translocation 0 LOC_Os06g24620 retrotransposon protein, putative, Ty3-gypsy subclass FN2723-S Chr6 15256408 15256408 0 0 Insertion 16 upstream_gene_variant HET FN2723-S Chr6 19682220 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr6 27094509 27094509 0 0 Insertion 2 INTERGENIC HET FN2723-S Chr6 27094509 27094511 0 0 Insertion 2 HET FN2723-S Chr6 28417945 28417949 0 0 Deletion 4 intron_variant HET FN2723-S Chr6 3571986 3571987 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os06g07430 OsFBX189 - F-box domain containing protein, expressed FN2723-S Chr6 3571986 3571987 0 0 Deletion 1 frameshift_variant HET LOC_Os06g07430 OsFBX189 - F-box domain containing protein, expressed FN2723-S Chr6 5018083 5018183 0 0 Inversion 0 LOC_Os06g09860 expressed protein FN2723-S Chr7 14690442 C-T 0 0 Single Base Substitution 0 HET FN2723-S Chr7 14690442 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr7 17093962 A-G 0 0 Single Base Substitution 0 HET FN2723-S Chr7 17093962 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr7 21679367 T-G 0 0 Single Base Substitution 0 HET FN2723-S Chr7 21679367 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr7 26081899 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr7 454764 G-A 0 0 Single Base Substitution 0 Homo FN2723-S Chr7 454764 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2723-S Chr7 8452729 8452730 0 0 Deletion 1 frameshift_variant HET LOC_Os07g14800 retrotransposon protein, putative, unclassified, expressed FN2723-S Chr7 9387189 Chr4 20072514 0 Translocation 0 FN2723-S Chr8 12449521 T-C 0 0 Single Base Substitution 0 HET FN2723-S Chr8 13038720 Chr7 14407536 0 Translocation 0 FN2723-S Chr8 13844239 13844239 0 0 Insertion 1 intergenic_region HET FN2723-S Chr8 15189784 15189785 0 0 Deletion 1 frameshift_variant HET LOC_Os08g25020 retrotransposon protein, putative, Ty1-copia subclass FN2723-S Chr8 18559385 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g30190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2723-S Chr8 24362510 24362511 0 0 Insertion 1 HET FN2723-S Chr8 26736967 26736967 0 0 Insertion 10 downstream_gene_variant HET FN2723-S Chr8 5411434 G-A 0 0 Single Base Substitution 0 HET FN2723-S Chr8 6258402 G-A 0 0 Single Base Substitution 0 HET FN2723-S Chr8 6448074 6448075 0 0 Insertion 1 HET FN2723-S Chr8 6538918 Chr4 3094411 0 Translocation 0 LOC_Os08g11110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2723-S Chr8 7424333 G-A 0 0 Single Base Substitution 0 INTRON HET FN2723-S Chr8 9568995 9568995 0 0 Insertion 1 downstream_gene_variant HET FN2723-S Chr9 12438833 Chr3 17343867 0 Translocation 0 FN2723-S Chr9 12438833 Chr3 17343867 0 Translocation 0 LOC_Os09g20650 OsFBX323 - F-box domain containing protein, expressed FN2723-S Chr9 12438834 Chr3 17344354 0 Translocation 0 FN2723-S Chr9 12438834 Chr3 17344354 0 Translocation 0 LOC_Os09g20650 OsFBX323 - F-box domain containing protein, expressed FN2723-S Chr9 14986632 A-T 0 0 Single Base Substitution 0 HET FN2723-S Chr9 14986632 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2723-S Chr9 17876182 A-C 0 0 Single Base Substitution 0 HET FN2723-S Chr9 17876182 A-C 0 0 Single Base Substitution 0 INTRON HET FN2723-S Chr9 21435383 21435399 0 0 Deletion 16 FRAME_SHIFT HET LOC_Os09g37160 retrotransposon protein, putative, unclassified, expressed FN2723-S Chr9 2592229 Chr7 27101163 0 Translocation 0 FN2723-S Chr9 2592229 Chr7 27101163 0 Translocation 0 LOC_Os07g45430 expressed protein FN2723-S Chr9 2902222 G-T 0 0 Single Base Substitution 0 HET FN2723-S Chr9 4920900 Chr1 19588631 0 Translocation 0 FN2723-S Chr9 8179897 C-G 0 0 Single Base Substitution 0 HET