FN2724-S-1 Chr1 12823354 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2724-S-1 Chr1 1307789 1307789 0 0 Insertion 1 downstream_gene_variant HET FN2724-S-1 Chr1 16716394 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2724-S-1 Chr1 18634078 18634113 0 0 Deletion 35 intron_variant HET FN2724-S-1 Chr1 24900792 C-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2724-S-1 Chr1 2607533 2607537 0 0 Deletion 4 intron_variant HET FN2724-S-1 Chr1 27072046 27072046 0 0 Insertion 1 downstream_gene_variant HET FN2724-S-1 Chr1 33352458 33352461 0 0 Deletion 3 upstream_gene_variant HET FN2724-S-1 Chr1 42289672 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2724-S-1 Chr1 42645991 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2724-S-1 Chr10 15026475 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os10g28820 MBTB38 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN2724-S-1 Chr10 15714837 15714839 0 0 Deletion 2 FRAME_SHIFT HOMO LOC_Os10g30250 transposon protein, putative, unclassified, expressed FN2724-S-1 Chr10 4101050 4101052 0 0 Deletion 2 INTERGENIC HOMO FN2724-S-1 Chr10 701702 701703 0 0 Deletion 1 intron_variant HET FN2724-S-1 Chr10 8763658 8763674 0 0 Deletion 16 FRAME_SHIFT HOMO LOC_Os10g17390 retrotransposon protein, putative, unclassified, expressed FN2724-S-1 Chr10 9183788 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2724-S-1 Chr11 15025330 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2724-S-1 Chr11 15615272 15615275 0 0 Deletion 3 INTERGENIC HET FN2724-S-1 Chr11 26727910 26727911 0 0 Deletion 1 upstream_gene_variant HET FN2724-S-1 Chr11 5309499 Chr10 16682476 0 Translocation 0 LOC_Os11g09919 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2724-S-1 Chr11 5309736 Chr10 16682459 0 Translocation 0 LOC_Os11g09919 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2724-S-1 Chr11 7720116 Chr6 4358308 0 Translocation 0 FN2724-S-1 Chr12 10311523 10311525 0 0 Deletion 2 INTERGENIC HET FN2724-S-1 Chr12 14972853 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2724-S-1 Chr12 15324301 15324301 0 0 Insertion 32 upstream_gene_variant HET FN2724-S-1 Chr12 19021652 19021665 0 0 Deletion 13 upstream_gene_variant HET FN2724-S-1 Chr12 22275126 22275126 0 0 Insertion 1 upstream_gene_variant HET FN2724-S-1 Chr2 23393977 23393977 0 0 Insertion 2 frameshift_variant HET LOC_Os02g38700 transposon protein, putative, Ac/Ds sub-class, expressed FN2724-S-1 Chr2 29130293 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2724-S-1 Chr2 29201436 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN2724-S-1 Chr2 29201437 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2724-S-1 Chr2 9198111 9198112 0 0 Deletion 1 upstream_gene_variant HET FN2724-S-1 Chr3 1118444 1507903 0 0 Inversion 389459 FN2724-S-1 Chr3 19325189 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2724-S-1 Chr3 20998327 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2724-S-1 Chr3 27502209 T-C 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN2724-S-1 Chr3 28285990 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2724-S-1 Chr3 29497643 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2724-S-1 Chr3 30934365 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2724-S-1 Chr3 31357705 31357709 0 0 Deletion 4 UTR_3_PRIME HET FN2724-S-1 Chr3 964968 1789128 0 0 Inversion 824160 LOC_Os03g02610 glycosyl hydrolases family 16 protein, protein, expressed FN2724-S-1 Chr3 964968 1789128 0 0 Inversion 824160 LOC_Os03g03910 catalase domain containing protein, expressed FN2724-S-1 Chr3 970242 970242 0 0 Insertion 1 upstream_gene_variant HET FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02650 ligA, putative, expressed FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02660 expressed protein FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02670 transporter family protein, putative, expressed FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02680 cyclin-dependent kinase A-1, putative, expressed FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02685 lysM domain containing protein, putative, expressed FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02690 dihydrodipicolinate reductase, putative, expressed FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02700 HOTHEAD precursor, putative, expressed FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02710 hydroxymethylglutaryl-CoA synthase, putative, expressed FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02720 expressed protein FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02730 expressed protein FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02740 phospholipase D, putative, expressed FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02750 OsSub25 - Putative Subtilisin homologue, expressed FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02762 PPR repeat domain containing protein, putative, expressed FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02770 expressed protein FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02780 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02790 hypothetical protein FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02800 no apical meristem protein, putative, expressed FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02820 expressed protein FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02830 cell cycle control protein, putative, expressed FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g02840 remorin family protein, putative, expressed FN2724-S-1 Chr3 971001 1118000 0 0 Deletion 146999 LOC_Os03g07050 retrotransposon protein, putative, unclassified, expressed FN2724-S-1 Chr4 12174090 12174090 0 0 Insertion 37 upstream_gene_variant HET FN2724-S-1 Chr4 13545714 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2724-S-1 Chr4 1369314 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2724-S-1 Chr4 22563852 A-G 0 0 Single Base Substitution 0 INTRON HET FN2724-S-1 Chr4 2797684 2797685 0 0 Deletion 1 upstream_gene_variant HET FN2724-S-1 Chr4 2952709 2952709 0 0 Insertion 1 upstream_gene_variant HET FN2724-S-1 Chr4 30464968 30464971 0 0 Deletion 3 INTRON HOMO FN2724-S-1 Chr4 7293763 7293764 0 0 Deletion 1 upstream_gene_variant HET FN2724-S-1 Chr5 15279212 15279213 0 0 Deletion 1 downstream_gene_variant HET FN2724-S-1 Chr5 19887232 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2724-S-1 Chr5 19887233 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2724-S-1 Chr6 1114001 1123000 0 0 Deletion 8999 LOC_Os06g11140 pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed FN2724-S-1 Chr6 11285826 T-A 0 0 Single Base Substitution 0 INTRON HET FN2724-S-1 Chr6 1290743 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g03380 expressed protein FN2724-S-1 Chr6 16047192 16047192 0 0 Insertion 69 upstream_gene_variant HET FN2724-S-1 Chr6 1872307 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2724-S-1 Chr6 1872308 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2724-S-1 Chr6 25226022 25226022 0 0 Insertion 94 upstream_gene_variant HET FN2724-S-1 Chr6 29066343 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2724-S-1 Chr6 29273253 29273254 0 0 Deletion 1 upstream_gene_variant HET FN2724-S-1 Chr7 12567583 T-C 0 0 Single Base Substitution 0 INTRON HET FN2724-S-1 Chr7 15090996 15090997 0 0 Deletion 1 upstream_gene_variant HET FN2724-S-1 Chr7 19989878 19989890 0 0 Deletion 12 INTRON HOMO FN2724-S-1 Chr7 20991174 20991174 0 0 Insertion 4 INTERGENIC HET FN2724-S-1 Chr7 314092 314094 0 0 Deletion 2 upstream_gene_variant HET FN2724-S-1 Chr7 4765762 Chr1 40659048 0 Translocation 0 FN2724-S-1 Chr7 7250670 7250691 0 0 Deletion 21 intron_variant HET FN2724-S-1 Chr8 13869200 13869200 0 0 Insertion 1 upstream_gene_variant HET FN2724-S-1 Chr8 18273947 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2724-S-1 Chr8 20680692 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2724-S-1 Chr8 2333791 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2724-S-1 Chr8 2542960 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2724-S-1 Chr8 6683197 6683198 0 0 Deletion 1 upstream_gene_variant HET FN2724-S-1 Chr8 8120347 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g13650 expressed protein FN2724-S-1 Chr9 1342413 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2724-S-1 Chr9 5768749 5768767 0 0 Deletion 18 upstream_gene_variant HET