FN2725-S Chr1 11756568 C-T 0 0 Single Base Substitution 0 HET FN2725-S Chr1 11756568 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr1 1251589 A-G 0 0 Single Base Substitution 0 Homo FN2725-S Chr1 15572817 C-T 0 0 Single Base Substitution 0 Homo FN2725-S Chr1 15572817 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2725-S Chr1 158016 158016 0 0 Insertion 1 frameshift_variant HET LOC_Os01g01320 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2725-S Chr1 17010469 A-G 0 0 Single Base Substitution 0 Homo FN2725-S Chr1 17010469 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2725-S Chr1 17135189 T-G 0 0 Single Base Substitution 0 Homo FN2725-S Chr1 17135189 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2725-S Chr1 2981348 2981541 0 0 Inversion 193 FN2725-S Chr1 33073022 C-T 0 0 Single Base Substitution 0 HET FN2725-S Chr1 33073022 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr1 33162737 C-G 0 0 Single Base Substitution 0 HET FN2725-S Chr1 33162737 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr1 33942994 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g58710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2725-S Chr1 34392738 C-T 0 0 Single Base Substitution 0 HET FN2725-S Chr1 34392738 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr1 40770942 40770943 0 0 Deletion 1 downstream_gene_variant HET FN2725-S Chr1 40884064 C-T 0 0 Single Base Substitution 0 HET FN2725-S Chr1 40884064 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr1 4177322 C-A 0 0 Single Base Substitution 0 HET FN2725-S Chr1 7065368 7065368 0 0 Insertion 6 downstream_gene_variant HET FN2725-S Chr1 8481130 8481145 0 0 Deletion 15 Homo FN2725-S Chr1 8481130 8481145 0 0 Deletion 15 INTERGENIC HOMO FN2725-S Chr1 9866617 9866617 0 0 Insertion 2 UTR_5_PRIME HET FN2725-S Chr1 9866617 9866619 0 0 Insertion 2 HET FN2725-S Chr10 10179376 A-G 0 0 Single Base Substitution 0 Homo FN2725-S Chr10 10179376 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2725-S Chr10 12051403 T-A 0 0 Single Base Substitution 0 Homo FN2725-S Chr10 12051403 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN2725-S Chr10 13030905 Chr9 18669036 0 Translocation 0 FN2725-S Chr10 13030909 Chr9 18668209 0 Translocation 0 FN2725-S Chr10 13030909 Chr9 18668209 0 Translocation 0 LOC_Os09g31025 EF hand family protein, expressed FN2725-S Chr10 13347357 13347359 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os10g25760 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2725-S Chr10 13347357 13347359 0 0 Deletion 2 frameshift_variant Homo LOC_Os10g25760 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2725-S Chr10 16950001 16991000 0 0 Deletion 40999 LOC_Os10g32348 PsbP, putative, expressed FN2725-S Chr10 16950001 16991000 0 0 Deletion 40999 LOC_Os10g32372 hypothetical protein FN2725-S Chr10 16950001 16991000 0 0 Deletion 40999 LOC_Os10g32400 PsbP, putative, expressed FN2725-S Chr10 16950001 16991000 0 0 Deletion 40999 LOC_Os10g32405 expressed protein FN2725-S Chr10 16950001 16991000 0 0 Deletion 40999 LOC_Os10g32560 transposon protein, putative, unclassified, expressed FN2725-S Chr10 16952001 16991000 0 0 Deletion 38999 LOC_Os10g32300 tetratricopeptide repeat domain containing protein, expressed FN2725-S Chr10 16952001 16991000 0 0 Deletion 38999 LOC_Os10g32348 PsbP, putative, expressed FN2725-S Chr10 16952001 16991000 0 0 Deletion 38999 LOC_Os10g32372 hypothetical protein FN2725-S Chr10 16952001 16991000 0 0 Deletion 38999 LOC_Os10g32400 PsbP, putative, expressed FN2725-S Chr10 16952001 16991000 0 0 Deletion 38999 LOC_Os10g32405 expressed protein FN2725-S Chr10 16967570 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2725-S Chr10 20563734 C-A 0 0 Single Base Substitution 0 Homo FN2725-S Chr10 20563734 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2725-S Chr10 22054887 G-T 0 0 Single Base Substitution 0 Homo FN2725-S Chr10 22054887 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2725-S Chr10 2470738 Chr4 679517 0 Translocation 0 FN2725-S Chr10 2549515 2549519 0 0 Deletion 4 FRAME_SHIFT HOMO LOC_Os10g05200 OsFBX367 - F-box domain containing protein, expressed FN2725-S Chr10 2549515 2549519 0 0 Deletion 4 frameshift_variant HET LOC_Os10g05200 OsFBX367 - F-box domain containing protein, expressed FN2725-S Chr10 3322159 C-T 0 0 Single Base Substitution 0 HET FN2725-S Chr10 3328261 G-C 0 0 Single Base Substitution 0 Homo FN2725-S Chr10 3328261 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2725-S Chr10 3336041 3336054 0 0 Deletion 13 Homo FN2725-S Chr10 3336041 3336054 0 0 Deletion 13 INTERGENIC HOMO FN2725-S Chr10 5883741 5883741 0 0 Insertion 1 upstream_gene_variant HET FN2725-S Chr10 6618984 Chr6 13457404 0 Translocation 0 LOC_Os06g23080 retrotransposon protein, putative, unclassified, expressed FN2725-S Chr10 6618984 Chr6 13457404 0 Translocation 0 LOC_Os10g11930 retrotransposon protein, putative, unclassified, expressed FN2725-S Chr10 6707478 A-G 0 0 Single Base Substitution 0 Homo FN2725-S Chr10 6707478 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2725-S Chr10 6928220 Chr8 19394181 0 Translocation 0 FN2725-S Chr10 9049350 C-T 0 0 Single Base Substitution 0 Homo FN2725-S Chr10 9049350 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2725-S Chr10 9912215 Chr2 32908783 0 Translocation 0 LOC_Os02g53740 XI-I, putative, expressed FN2725-S Chr10 9912215 Chr2 32908783 0 Translocation 0 LOC_Os10g19860 XI-I, putative, expressed FN2725-S Chr11 12631453 Chr10 4408877 0 Translocation 0 FN2725-S Chr11 13254646 13254646 0 0 Insertion 1 upstream_gene_variant HET FN2725-S Chr11 14145230 14145231 0 0 Insertion 1 HET FN2725-S Chr11 14531401 G-T 0 0 Single Base Substitution 0 HET FN2725-S Chr11 14531401 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr11 17331039 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g29850 ABC transporter, ATP-binding protein, putative, expressed FN2725-S Chr11 20235107 20235108 0 0 Deletion 1 upstream_gene_variant HET FN2725-S Chr11 23155758 23155758 0 0 Insertion 6 upstream_gene_variant HET FN2725-S Chr11 23639822 C-T 0 0 Single Base Substitution 0 HET FN2725-S Chr11 23639822 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr11 2366329 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g05340 transposon protein, putative, unclassified, expressed FN2725-S Chr11 28405922 28406014 0 0 Deletion 92 upstream_gene_variant HET FN2725-S Chr11 9960409 Chr8 22924000 0 Translocation 0 FN2725-S Chr11 9987199 9987199 0 0 Insertion 1 upstream_gene_variant HET FN2725-S Chr12 12262962 G-C 0 0 Single Base Substitution 0 HET FN2725-S Chr12 12262962 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr12 13936898 Chr4 16502356 0 Translocation 0 LOC_Os12g24420 cyclin-dependent kinase G-1, putative, expressed FN2725-S Chr12 1590810 1590816 0 0 Deletion 6 HET FN2725-S Chr12 1590810 1590816 0 0 Deletion 6 INTERGENIC HOMO FN2725-S Chr12 18061438 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr12 22115824 C-T 0 0 Single Base Substitution 0 HET FN2725-S Chr12 22115824 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr12 24906263 24906263 0 0 Insertion 1 upstream_gene_variant HET FN2725-S Chr12 3472955 C-T 0 0 Single Base Substitution 0 HET FN2725-S Chr12 6225119 G-A 0 0 Single Base Substitution 0 HET FN2725-S Chr12 6225119 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2725-S Chr2 15920171 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr2 23658613 A-T 0 0 Single Base Substitution 0 Homo FN2725-S Chr2 23658613 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2725-S Chr2 25503357 25503369 0 0 Deletion 12 Homo FN2725-S Chr2 25503357 25503369 0 0 Deletion 12 INTERGENIC HOMO FN2725-S Chr2 25670941 A-C 0 0 Single Base Substitution 0 Homo FN2725-S Chr2 25670941 A-C 0 0 Single Base Substitution 0 INTRON HOMO FN2725-S Chr2 2656475 2656478 0 0 Deletion 3 CODON_CHANGE_PLUS_CODON_DELETION HOMO LOC_Os02g05490 expressed protein FN2725-S Chr2 2656475 2656478 0 0 Deletion 3 disruptive_inframe_deletion Homo LOC_Os02g05490 expressed protein FN2725-S Chr2 30175401 30175404 0 0 Insertion 3 HET FN2725-S Chr2 33274863 C-T 0 0 Single Base Substitution 0 HET FN2725-S Chr2 33274863 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr2 3394477 3394482 0 0 Deletion 5 FRAME_SHIFT HOMO LOC_Os02g06740 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2725-S Chr2 3394477 3394482 0 0 Deletion 5 frameshift_variant Homo LOC_Os02g06740 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2725-S Chr2 34434078 34434078 0 0 Insertion 1 5_prime_UTR_variant HET FN2725-S Chr2 368842 368843 0 0 Deletion 1 upstream_gene_variant HET FN2725-S Chr2 7171336 A-G 0 0 Single Base Substitution 0 Homo FN2725-S Chr2 7171336 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2725-S Chr2 7502431 G-C 0 0 Single Base Substitution 0 Homo FN2725-S Chr2 7502431 G-C 0 0 Single Base Substitution 0 INTRON HOMO FN2725-S Chr2 8058748 8058749 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os02g14600 glutelin, putative, expressed FN2725-S Chr2 8058748 8058749 0 0 Deletion 1 frameshift_variant Homo LOC_Os02g14600 glutelin, putative, expressed FN2725-S Chr2 8177575 8177576 0 0 Deletion 1 Homo FN2725-S Chr2 8177575 8177576 0 0 Deletion 1 UTR_3_PRIME HOMO FN2725-S Chr3 10393192 10393194 0 0 Deletion 2 Homo FN2725-S Chr3 10393192 10393194 0 0 Deletion 2 INTERGENIC HOMO FN2725-S Chr3 15080629 C-T 0 0 Single Base Substitution 0 HET FN2725-S Chr3 15080629 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2725-S Chr3 20556672 A-T 0 0 Single Base Substitution 0 HET FN2725-S Chr3 20556672 A-T 0 0 Single Base Substitution 0 INTRON HET FN2725-S Chr3 2537993 G-A 0 0 Single Base Substitution 0 HET FN2725-S Chr3 2537993 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr3 26893589 C-A 0 0 Single Base Substitution 0 INTRON HET FN2725-S Chr3 27328619 27328620 0 0 Deletion 1 INTERGENIC HET FN2725-S Chr3 27409767 A-C 0 0 Single Base Substitution 0 HET FN2725-S Chr3 27409767 A-C 0 0 Single Base Substitution 0 INTRON HET FN2725-S Chr3 30974030 T-C 0 0 Single Base Substitution 0 HET FN2725-S Chr3 30974030 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2725-S Chr3 33399366 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g58640 FHA domain containing protein, putative, expressed FN2725-S Chr3 35587572 G-A 0 0 Single Base Substitution 0 HET FN2725-S Chr3 4172910 4172911 0 0 Deletion 1 Homo FN2725-S Chr3 4172910 4172911 0 0 Deletion 1 INTERGENIC HET FN2725-S Chr3 8285370 8285371 0 0 Deletion 1 frameshift_variant HET LOC_Os03g15160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2725-S Chr3 8710033 C-T 0 0 Single Base Substitution 0 Homo FN2725-S Chr3 8710033 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2725-S Chr3 9570690 9570690 0 0 Insertion 8 upstream_gene_variant HET FN2725-S Chr4 10182469 10182469 0 0 Insertion 1 upstream_gene_variant HET FN2725-S Chr4 13106144 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr4 22576125 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr4 23800692 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr4 24486051 G-T 0 0 Single Base Substitution 0 HET FN2725-S Chr4 24486051 G-T 0 0 Single Base Substitution 0 INTRON HET FN2725-S Chr4 30138716 C-A 0 0 Single Base Substitution 0 HET FN2725-S Chr4 30138716 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr4 30859493 30859495 0 0 Deletion 2 upstream_gene_variant HET FN2725-S Chr4 34736713 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr4 4849085 4849156 0 0 Deletion 71 upstream_gene_variant HET FN2725-S Chr4 4896678 A-T 0 0 Single Base Substitution 0 HET FN2725-S Chr4 7706796 7706796 0 0 Insertion 1 downstream_gene_variant HET FN2725-S Chr4 8985558 A-C 0 0 Single Base Substitution 0 HET FN2725-S Chr4 8985558 A-C 0 0 Single Base Substitution 0 INTRON HET FN2725-S Chr5 10198056 10198057 0 0 Deletion 1 upstream_gene_variant HET FN2725-S Chr5 14260461 G-A 0 0 Single Base Substitution 0 HET FN2725-S Chr5 14260461 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr5 17263579 17263592 0 0 Deletion 13 Homo FN2725-S Chr5 17263579 17263592 0 0 Deletion 13 INTERGENIC HET FN2725-S Chr5 18225851 C-T 0 0 Single Base Substitution 0 Homo FN2725-S Chr5 18225851 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2725-S Chr5 19150799 T-C 0 0 Single Base Substitution 0 HET FN2725-S Chr5 2274830 2274831 0 0 Deletion 1 upstream_gene_variant HET FN2725-S Chr5 28348596 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr5 5064534 C-G 0 0 Single Base Substitution 0 HET FN2725-S Chr6 11098499 11098499 0 0 Insertion 1 upstream_gene_variant HET FN2725-S Chr6 11800947 11800952 0 0 Deletion 5 downstream_gene_variant HET FN2725-S Chr6 15568844 A-T 0 0 Single Base Substitution 0 HET FN2725-S Chr6 15568844 A-T 0 0 Single Base Substitution 0 INTRON HET FN2725-S Chr6 15568845 T-A 0 0 Single Base Substitution 0 HET FN2725-S Chr6 15568845 T-A 0 0 Single Base Substitution 0 INTRON HET FN2725-S Chr6 17740750 C-T 0 0 Single Base Substitution 0 HET FN2725-S Chr6 20088079 C-A 0 0 Single Base Substitution 0 HET FN2725-S Chr6 20088079 C-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2725-S Chr6 27244662 27244664 0 0 Deletion 2 FRAME_SHIFT HOMO LOC_Os06g45030 transposon protein, putative, unclassified, expressed FN2725-S Chr6 27244662 27244664 0 0 Deletion 2 frameshift_variant Homo LOC_Os06g45030 transposon protein, putative, unclassified, expressed FN2725-S Chr6 4002638 G-A 0 0 Single Base Substitution 0 HET FN2725-S Chr6 448797 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr6 9711298 9711302 0 0 Deletion 4 upstream_gene_variant HET FN2725-S Chr6 9936920 G-T 0 0 Single Base Substitution 0 HET FN2725-S Chr7 10706080 Chr3 4570858 0 Translocation 0 LOC_Os03g08834 expressed protein FN2725-S Chr7 13347508 13347509 0 0 Deletion 1 frameshift_variant HET LOC_Os07g23610 transposon protein, putative, CACTA, En/Spm sub-class FN2725-S Chr7 13690648 13690653 0 0 Deletion 5 INTERGENIC HOMO FN2725-S Chr7 15493504 15493516 0 0 Deletion 12 CODON_CHANGE_PLUS_CODON_DELETION HOMO LOC_Os07g26810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2725-S Chr7 15493504 15493516 0 0 Deletion 12 disruptive_inframe_deletion Homo LOC_Os07g26810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2725-S Chr7 16137225 16137237 0 0 Deletion 12 INTERGENIC HET FN2725-S Chr7 17405943 17405945 0 0 Deletion 2 HET FN2725-S Chr7 17405943 17405945 0 0 Deletion 2 INTRON HOMO FN2725-S Chr7 18694457 18694467 0 0 Deletion 10 HET FN2725-S Chr7 18754915 G-A 0 0 Single Base Substitution 0 Homo FN2725-S Chr7 18754915 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2725-S Chr7 20402996 Chr6 29925132 0 Translocation 0 FN2725-S Chr7 23496658 C-T 0 0 Single Base Substitution 0 HET FN2725-S Chr7 23571070 G-A 0 0 Single Base Substitution 0 Homo FN2725-S Chr7 23571070 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2725-S Chr7 25340100 Chr3 31170074 0 Translocation 0 FN2725-S Chr7 26750819 A-G 0 0 Single Base Substitution 0 Homo FN2725-S Chr7 26750819 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2725-S Chr7 27956711 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g46780 tyrosine-specific transport protein, putative, expressed FN2725-S Chr7 5301251 5301270 0 0 Deletion 19 downstream_gene_variant HET FN2725-S Chr7 7162950 T-C 0 0 Single Base Substitution 0 HET FN2725-S Chr7 7162950 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr7 8544040 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_STOP HET FN2725-S Chr7 972891 972892 0 0 Deletion 1 UTR_5_PRIME HET FN2725-S Chr8 14916032 14916038 0 0 Deletion 6 CODON_DELETION HOMO LOC_Os08g24690 retrotransposon protein, putative, unclassified, expressed FN2725-S Chr8 14916032 14916038 0 0 Deletion 6 inframe_deletion HET LOC_Os08g24690 retrotransposon protein, putative, unclassified, expressed FN2725-S Chr8 1697012 1697012 0 0 Insertion 4 intergenic_region HET FN2725-S Chr8 17128570 T-C 0 0 Single Base Substitution 0 HET FN2725-S Chr8 17128570 T-C 0 0 Single Base Substitution 0 INTRON HET FN2725-S Chr8 19194685 Chr7 9565473 0 Translocation 0 FN2725-S Chr8 19194685 Chr7 9565473 0 Translocation 0 LOC_Os07g16364 expressed protein FN2725-S Chr8 19691030 Chr7 9266819 0 Translocation 0 FN2725-S Chr8 20892264 C-T 0 0 Single Base Substitution 0 HET FN2725-S Chr8 23436547 A-T 0 0 Single Base Substitution 0 Homo FN2725-S Chr8 23436547 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2725-S Chr8 25824153 25824153 0 0 Insertion 2 INTERGENIC HET FN2725-S Chr8 25824153 25824155 0 0 Insertion 2 HET FN2725-S Chr8 6341654 6341733 0 0 Deletion 79 downstream_gene_variant HET FN2725-S Chr8 8503200 T-C 0 0 Single Base Substitution 0 HET FN2725-S Chr8 8503200 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr9 12679376 12679377 0 0 Deletion 1 frameshift_variant HET LOC_Os09g21020 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2725-S Chr9 15965745 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr9 17483253 T-C 0 0 Single Base Substitution 0 Homo FN2725-S Chr9 17483253 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2725-S Chr9 1926523 G-A 0 0 Single Base Substitution 0 HET FN2725-S Chr9 1969887 C-T 0 0 Single Base Substitution 0 HET FN2725-S Chr9 1969887 C-T 0 0 Single Base Substitution 0 INTRON HET FN2725-S Chr9 19936471 19936474 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os09g33750 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2725-S Chr9 22374907 T-C 0 0 Single Base Substitution 0 HET FN2725-S Chr9 22374907 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr9 2715111 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2725-S Chr9 4530675 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g08650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2725-S Chr9 5008652 C-A 0 0 Single Base Substitution 0 HET FN2725-S Chr9 7335141 7335239 0 0 Deletion 98 splice_region_variant HET