FN2726-S Chr1 12424397 12424405 0 0 Deletion 8 INTERGENIC HOMO FN2726-S Chr1 13855483 13855494 0 0 Deletion 11 INTERGENIC HOMO FN2726-S Chr1 17765234 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2726-S Chr1 21375444 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2726-S Chr1 21378812 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2726-S Chr1 22725927 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g40250 down-regulated in metastasis family protein, expressed FN2726-S Chr1 28427909 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2726-S Chr1 35236202 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2726-S Chr1 36525248 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2726-S Chr1 41577467 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2726-S Chr1 41726711 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2726-S Chr1 7821753 7821753 0 0 Insertion 2 INTERGENIC HET FN2726-S Chr1 7900970 7900977 0 0 Deletion 7 INTERGENIC HET FN2726-S Chr10 10985501 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2726-S Chr10 11420372 A-T 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN2726-S Chr10 12206886 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2726-S Chr10 13818458 13818459 0 0 Deletion 1 INTERGENIC HET FN2726-S Chr10 4320795 4320849 0 0 Deletion 54 downstream_gene_variant HET FN2726-S Chr10 6874019 6874048 0 0 Deletion 29 INTRON HET FN2726-S Chr10 8315449 8315458 0 0 Deletion 9 CODON_DELETION HET LOC_Os10g16670 retrotransposon protein, putative, unclassified, expressed FN2726-S Chr11 12489094 12489150 0 0 Deletion 56 intergenic_region HET FN2726-S Chr11 17115072 17115073 0 0 Deletion 1 INTRON HET FN2726-S Chr11 21413840 21413841 0 0 Deletion 1 UTR_5_PRIME HET FN2726-S Chr11 28977961 28977962 0 0 Deletion 1 INTERGENIC HET FN2726-S Chr11 7452808 7452809 0 0 Deletion 1 intergenic_region HET FN2726-S Chr11 9200123 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2726-S Chr12 11256496 11256499 0 0 Deletion 3 INTRON HET FN2726-S Chr12 14369242 C-T 0 0 Single Base Substitution 0 INTRON HET FN2726-S Chr12 17891331 17891331 0 0 Insertion 22 upstream_gene_variant HET FN2726-S Chr12 27207326 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2726-S Chr12 6289089 6289089 0 0 Insertion 1 upstream_gene_variant HET FN2726-S Chr12 9114774 9114804 0 0 Deletion 30 splice_region_variant&intron_variant HET FN2726-S Chr2 10634336 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2726-S Chr2 13024414 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2726-S Chr2 15903534 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2726-S Chr2 18102857 18102857 0 0 Insertion 63 upstream_gene_variant HET FN2726-S Chr2 20119570 20119577 0 0 Deletion 7 INTERGENIC HET FN2726-S Chr2 20527910 20527926 0 0 Deletion 16 INTERGENIC HET FN2726-S Chr2 23723338 23723352 0 0 Deletion 14 INTRON HET FN2726-S Chr2 24816985 24817002 0 0 Deletion 17 FRAME_SHIFT HET LOC_Os02g41450 no apical meristem protein, putative, expressed FN2726-S Chr2 30205081 30205087 0 0 Deletion 6 INTERGENIC HET FN2726-S Chr2 33162378 33162380 0 0 Deletion 2 SPLICE_SITE_REGION HET FN2726-S Chr2 33300096 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g54300 expressed protein FN2726-S Chr2 5379539 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2726-S Chr3 12881950 12881952 0 0 Deletion 2 INTERGENIC HET FN2726-S Chr3 2501667 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2726-S Chr3 25350185 25350189 0 0 Deletion 4 intergenic_region HET FN2726-S Chr3 25953552 25953587 0 0 Deletion 35 intergenic_region HET FN2726-S Chr3 26440700 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g46720 OsFBX106 - F-box domain containing protein, expressed FN2726-S Chr3 27267001 27306000 0 0 Deletion 38999 LOC_Os03g47970 GATA transcription factor 25, putative, expressed FN2726-S Chr3 27267001 27306000 0 0 Deletion 38999 LOC_Os03g47980 expressed protein FN2726-S Chr3 27267001 27306000 0 0 Deletion 38999 LOC_Os03g47990 OB-fold nucleic acid binding domain containing protein, putative, expressed FN2726-S Chr3 27267001 27306000 0 0 Deletion 38999 LOC_Os03g48000 CorA-like magnesium transporter protein, putative, expressed FN2726-S Chr3 27267001 27306000 0 0 Deletion 38999 LOC_Os03g48010 exostosin, putative, expressed FN2726-S Chr3 27267001 27306000 0 0 Deletion 38999 LOC_Os03g48020 expressed protein FN2726-S Chr3 27267001 27306000 0 0 Deletion 38999 LOC_Os03g48030 integral membrane HPP family protein, putative, expressed FN2726-S Chr3 27267001 27306000 0 0 Deletion 38999 LOC_Os03g48520 PB1 domain containing protein, expressed FN2726-S Chr3 29378168 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2726-S Chr3 2953758 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2726-S Chr3 30118070 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2726-S Chr3 31688651 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g55650 expressed protein FN2726-S Chr3 33638441 33638445 0 0 Deletion 4 INTERGENIC HET FN2726-S Chr3 33746163 33746173 0 0 Deletion 10 INTRON HET FN2726-S Chr3 34155012 34155024 0 0 Deletion 12 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os03g60050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2726-S Chr3 34826020 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g61360 hydrolase, alpha/beta fold family domain containing protein, expressed FN2726-S Chr3 34826022 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g61360 hydrolase, alpha/beta fold family domain containing protein, expressed FN2726-S Chr3 34827426 34827428 0 0 Deletion 2 INTRON HET FN2726-S Chr3 9438348 9438349 0 0 Deletion 1 INTRON HET FN2726-S Chr4 13682291 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2726-S Chr4 15937864 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g26940 retrotransposon protein, putative, unclassified FN2726-S Chr4 16977819 16977823 0 0 Deletion 4 upstream_gene_variant HET FN2726-S Chr4 21827385 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2726-S Chr4 22319899 22319901 0 0 Deletion 2 INTERGENIC HET FN2726-S Chr4 22751005 A-G 0 0 Single Base Substitution 0 INTRON HET FN2726-S Chr4 2659043 2659043 0 0 Insertion 2 upstream_gene_variant HET FN2726-S Chr4 27897158 27897159 0 0 Deletion 1 INTERGENIC HET FN2726-S Chr4 3918642 3918643 0 0 Deletion 1 downstream_gene_variant HET FN2726-S Chr5 12103903 12103904 0 0 Deletion 1 INTRON HET FN2726-S Chr5 15807458 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g27170 retrotransposon, putative, centromere-specific, expressed FN2726-S Chr5 21840400 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g37340 expressed protein FN2726-S Chr6 13480440 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2726-S Chr6 15526689 15526690 0 0 Deletion 1 INTERGENIC HOMO FN2726-S Chr6 2392717 2392717 0 0 Insertion 12 upstream_gene_variant HET FN2726-S Chr6 24316499 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2726-S Chr6 25805318 25805320 0 0 Deletion 2 downstream_gene_variant HET FN2726-S Chr6 9935092 9935110 0 0 Deletion 18 INTERGENIC HET FN2726-S Chr7 10682045 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2726-S Chr7 10700544 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2726-S Chr7 14722465 14722477 0 0 Deletion 12 INTERGENIC HET FN2726-S Chr7 19545702 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN2726-S Chr7 19591289 19591291 0 0 Deletion 2 INTERGENIC HOMO FN2726-S Chr7 27861523 27861573 0 0 Deletion 50 upstream_gene_variant HET FN2726-S Chr7 6082727 6082727 0 0 Insertion 48 upstream_gene_variant HET FN2726-S Chr8 12631918 12631947 0 0 Deletion 29 INTERGENIC HOMO FN2726-S Chr8 13832020 13832020 0 0 Insertion 37 upstream_gene_variant HET FN2726-S Chr8 1585050 1585052 0 0 Deletion 2 INTERGENIC HET FN2726-S Chr8 17821455 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2726-S Chr8 21730299 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2726-S Chr8 2370312 2370314 0 0 Deletion 2 INTERGENIC HET FN2726-S Chr8 3411454 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2726-S Chr8 6086096 6086100 0 0 Deletion 4 frameshift_variant HET LOC_Os08g10380 expressed protein FN2726-S Chr8 6395685 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2726-S Chr8 8777938 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2726-S Chr9 16214876 16214878 0 0 Deletion 2 upstream_gene_variant HET FN2726-S Chr9 18532249 18532249 0 0 Insertion 12 downstream_gene_variant HET FN2726-S Chr9 19653117 19653117 0 0 Insertion 2 INTERGENIC HET FN2726-S Chr9 481349 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2726-S Chr9 7418697 7418697 0 0 Insertion 2 downstream_gene_variant HET