FN2727-S Chr1 10767793 10767815 0 0 Deletion 22 intergenic_region HET FN2727-S Chr1 1551259 1551269 0 0 Deletion 10 upstream_gene_variant HET FN2727-S Chr1 16527900 16527905 0 0 Deletion 5 INTRON HOMO FN2727-S Chr1 18944532 18944550 0 0 Deletion 18 CODON_DELETION HET LOC_Os01g34350 RNA-dependent RNA polymerase, putative, expressed FN2727-S Chr1 19023763 G-A 0 0 Single Base Substitution 0 INTRON HET FN2727-S Chr1 25357152 G-C 0 0 Single Base Substitution 0 INTRON HET FN2727-S Chr1 30207103 30207104 0 0 Deletion 1 INTERGENIC HOMO FN2727-S Chr1 30599884 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2727-S Chr1 32023918 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2727-S Chr1 39402521 39402533 0 0 Deletion 12 INTERGENIC HET FN2727-S Chr1 40029264 40029269 0 0 Deletion 5 INTERGENIC HET FN2727-S Chr1 41523001 41550000 0 0 Deletion 26999 LOC_Os01g71650 glycosyl hydrolases family 17, putative, expressed FN2727-S Chr1 41523001 41550000 0 0 Deletion 26999 LOC_Os01g71660 retrotransposon protein, putative, unclassified, expressed FN2727-S Chr1 41523001 41550000 0 0 Deletion 26999 LOC_Os01g71670 glycosyl hydrolases family 17, putative, expressed FN2727-S Chr1 41523001 41550000 0 0 Deletion 26999 LOC_Os01g71680 glycosyl hydrolases family 17, putative, expressed FN2727-S Chr1 41523001 41550000 0 0 Deletion 26999 LOC_Os01g71690 recA protein, expressed FN2727-S Chr1 41523001 41550000 0 0 Deletion 26999 LOC_Os01g71700 amino acid permease family protein, putative, expressed FN2727-S Chr1 41523001 41550000 0 0 Deletion 26999 LOC_Os01g72270 cytochrome P450, putative, expressed FN2727-S Chr1 4440327 4440330 0 0 Deletion 3 INTERGENIC HET FN2727-S Chr10 11749540 11749583 0 0 Deletion 43 downstream_gene_variant HET FN2727-S Chr10 11976634 11976640 0 0 Deletion 6 INTERGENIC HET FN2727-S Chr10 16251125 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2727-S Chr10 2632319 2632320 0 0 Deletion 1 upstream_gene_variant HET FN2727-S Chr10 6375977 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os10g11506 retrotransposon protein, putative, unclassified, expressed FN2727-S Chr11 13226315 13226315 0 0 Insertion 10 downstream_gene_variant HET FN2727-S Chr11 15102504 15102523 0 0 Deletion 19 INTRON HET FN2727-S Chr11 16159965 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN2727-S Chr11 27641105 27641106 0 0 Deletion 1 upstream_gene_variant HET FN2727-S Chr11 7040988 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2727-S Chr11 7125232 7125238 0 0 Deletion 6 UTR_3_PRIME HET FN2727-S Chr11 8238788 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2727-S Chr11 8839144 8839146 0 0 Deletion 2 INTERGENIC HET FN2727-S Chr12 12111302 12111307 0 0 Deletion 5 FRAME_SHIFT HOMO LOC_Os12g21540 retrotransposon protein, putative, unclassified, expressed FN2727-S Chr12 13222979 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2727-S Chr12 13768488 14129065 0 0 Inversion 360577 FN2727-S Chr12 13768506 14323361 0 0 Inversion 554855 FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24680 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24690 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24700 retrotransposon protein, putative, Ty1-copia subclass FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24710 retrotransposon protein, putative, unclassified, expressed FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24730 retrotransposon protein, putative, unclassified, expressed FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24740 retrotransposon protein, putative, unclassified FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24750 retrotransposon protein, putative, Ty3-gypsy subclass FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24770 retrotransposon protein, putative, unclassified, expressed FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24780 retrotransposon protein, putative, unclassified, expressed FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24790 retrotransposon protein, putative, LINE subclass, expressed FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24800 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24810 expressed protein FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24830 retrotransposon protein, putative, Ty3-gypsy subclass FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24840 retrotransposon protein, putative, Ty3-gypsy subclass FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24850 hypothetical protein FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24870 SWIM zinc finger family protein, putative, expressed FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24880 retrotransposon protein, putative, unclassified, expressed FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24890 retrotransposon protein, putative, Ty3-gypsy subclass FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24900 expressed protein FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24910 retrotransposon protein, putative, Ty3-gypsy subclass FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24920 retrotransposon, putative, centromere-specific, expressed FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24930 retrotransposon protein, putative, Ty3-gypsy subclass FN2727-S Chr12 14129001 14324000 0 0 Deletion 194999 LOC_Os12g24940 retrotransposon protein, putative, unclassified FN2727-S Chr12 19143415 19143427 0 0 Deletion 12 5_prime_UTR_variant HET FN2727-S Chr12 20402687 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2727-S Chr12 21247509 21247511 0 0 Deletion 2 INTERGENIC HET FN2727-S Chr12 25540643 C-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2727-S Chr12 8273338 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2727-S Chr12 9453348 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2727-S Chr2 11722189 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2727-S Chr2 16947734 16947823 0 0 Deletion 89 upstream_gene_variant HET FN2727-S Chr2 1839938 1839954 0 0 Deletion 16 INTERGENIC HET FN2727-S Chr2 20282309 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2727-S Chr2 20744640 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2727-S Chr2 28494722 28494724 0 0 Deletion 2 INTRON HET FN2727-S Chr2 32028292 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2727-S Chr2 7974871 7974884 0 0 Deletion 13 INTERGENIC HET FN2727-S Chr3 11079542 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2727-S Chr3 11088934 11088939 0 0 Deletion 5 INTERGENIC HOMO FN2727-S Chr3 18264749 18264750 0 0 Deletion 1 upstream_gene_variant HET FN2727-S Chr3 1944152 1944153 0 0 Deletion 1 INTERGENIC HOMO FN2727-S Chr3 21289192 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2727-S Chr3 22612598 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2727-S Chr3 25393870 25393875 0 0 Deletion 5 INTERGENIC HET FN2727-S Chr3 25833971 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2727-S Chr3 26158513 26158741 0 0 Inversion 228 FN2727-S Chr3 3594468 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2727-S Chr3 8284084 8284087 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os03g15160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2727-S Chr3 8487997 8487997 0 0 Insertion 2 intron_variant HET FN2727-S Chr4 12007415 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2727-S Chr4 18885922 18885923 0 0 Deletion 1 INTERGENIC HET FN2727-S Chr4 19733021 19733022 0 0 Deletion 1 frameshift_variant HET LOC_Os04g32730 retrotransposon protein, putative, unclassified, expressed FN2727-S Chr4 25015896 25015905 0 0 Deletion 9 INTERGENIC HET FN2727-S Chr4 27461211 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g46320 inactive receptor kinase At2g26730 precursor, putative, expressed FN2727-S Chr4 33183104 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2727-S Chr4 3880735 3880735 0 0 Insertion 1 upstream_gene_variant HET FN2727-S Chr4 6430175 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2727-S Chr4 8475390 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2727-S Chr4 8475391 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2727-S Chr4 8895924 8895937 0 0 Deletion 13 FRAME_SHIFT HET LOC_Os04g16370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2727-S Chr4 9988345 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2727-S Chr5 16886308 16886311 0 0 Deletion 3 CODON_CHANGE_PLUS_CODON_DELETION HOMO LOC_Os05g28800 LIPLESS1, putative, expressed FN2727-S Chr5 17137151 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2727-S Chr5 20193624 20193627 0 0 Deletion 3 CODON_CHANGE_PLUS_CODON_DELETION HOMO LOC_Os05g34150 glutathione S-transferase, putative, expressed FN2727-S Chr5 21821137 21821138 0 0 Deletion 1 upstream_gene_variant HET FN2727-S Chr5 25083865 25083895 0 0 Deletion 30 INTERGENIC HOMO FN2727-S Chr5 28686428 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g50040 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2727-S Chr5 3178719 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2727-S Chr6 10307306 10307327 0 0 Deletion 21 upstream_gene_variant HET FN2727-S Chr6 10648889 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2727-S Chr6 12369945 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2727-S Chr6 13235222 13235224 0 0 Deletion 2 INTERGENIC HOMO FN2727-S Chr6 21739120 21739124 0 0 Deletion 4 downstream_gene_variant HET FN2727-S Chr6 2196881 2196886 0 0 Deletion 5 FRAME_SHIFT HOMO LOC_Os06g04980 OsFBX185 - F-box domain containing protein, expressed FN2727-S Chr6 25489960 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2727-S Chr7 12158378 12158378 0 0 Insertion 1 intergenic_region HET FN2727-S Chr7 16263373 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2727-S Chr7 25231484 25231485 0 0 Deletion 1 upstream_gene_variant HET FN2727-S Chr7 2589886 2589887 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os07g05540 retrotransposon protein, putative, unclassified, expressed FN2727-S Chr7 26283880 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2727-S Chr7 5674508 6005773 0 0 Inversion 331265 FN2727-S Chr7 5674520 6005786 0 0 Inversion 331266 FN2727-S Chr7 6375744 6375752 0 0 Deletion 8 INTERGENIC HOMO FN2727-S Chr8 11049599 11049641 0 0 Deletion 42 upstream_gene_variant HET FN2727-S Chr8 1203692 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2727-S Chr8 16315574 16315576 0 0 Deletion 2 downstream_gene_variant HET FN2727-S Chr8 18606559 18606563 0 0 Deletion 4 INTERGENIC HET FN2727-S Chr8 19927377 19927378 0 0 Deletion 1 INTERGENIC HET FN2727-S Chr8 20082892 20082893 0 0 Deletion 1 upstream_gene_variant HET FN2727-S Chr8 20439912 20439926 0 0 Deletion 14 INTERGENIC HET FN2727-S Chr8 26470863 26470864 0 0 Deletion 1 INTERGENIC HET FN2727-S Chr8 9056951 9056952 0 0 Deletion 1 frameshift_variant HET LOC_Os08g15010 retrotransposon protein, putative, unclassified, expressed FN2727-S Chr9 12250913 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2727-S Chr9 15971916 Chr7 10273987 0 Translocation 0 FN2727-S Chr9 15971922 Chr7 10273576 0 Translocation 0 FN2727-S Chr9 18643267 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g30510 glucosyl transferase, putative, expressed FN2727-S Chr9 21943001 22044000 0 0 Deletion 100999 LOC_Os09g38090 expressed protein FN2727-S Chr9 21943001 22044000 0 0 Deletion 100999 LOC_Os09g38100 phosphate carrier protein, mitochondrial precursor, putative, expressed FN2727-S Chr9 21943001 22044000 0 0 Deletion 100999 LOC_Os09g38104 hypothetical protein FN2727-S Chr9 21943001 22044000 0 0 Deletion 100999 LOC_Os09g38110 RING-H2 finger protein, putative, expressed FN2727-S Chr9 21943001 22044000 0 0 Deletion 100999 LOC_Os09g38120 expressed protein FN2727-S Chr9 21943001 22044000 0 0 Deletion 100999 LOC_Os09g38130 auxin efflux carrier component, putative, expressed FN2727-S Chr9 21943001 22044000 0 0 Deletion 100999 LOC_Os09g38150 expressed protein FN2727-S Chr9 21943001 22044000 0 0 Deletion 100999 LOC_Os09g38170 expressed protein FN2727-S Chr9 21943001 22044000 0 0 Deletion 100999 LOC_Os09g38180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2727-S Chr9 21943001 22044000 0 0 Deletion 100999 LOC_Os09g38200 retrotransposon protein, putative, unclassified, expressed FN2727-S Chr9 21943001 22044000 0 0 Deletion 100999 LOC_Os09g38210 auxin efflux carrier component, putative, expressed FN2727-S Chr9 21943001 22044000 0 0 Deletion 100999 LOC_Os09g38239 sulfotransferase domain containing protein, expressed FN2727-S Chr9 21943001 22044000 0 0 Deletion 100999 LOC_Os09g38268 RNA polymerase IV largest subunit, putative, expressed FN2727-S Chr9 21943001 22044000 0 0 Deletion 100999 LOC_Os09g38300 OsFBK20 - F-box domain and kelch repeat containing protein, expressed FN2727-S Chr9 21943001 22044000 0 0 Deletion 100999 LOC_Os09g38310 pentatricopeptide, putative, expressed FN2727-S Chr9 21943001 22044000 0 0 Deletion 100999 LOC_Os09g38320 phytoene synthase, chloroplast precursor, putative, expressed FN2727-S Chr9 21943001 22044000 0 0 Deletion 100999 LOC_Os09g38710 HEAT repeat family protein, putative, expressed FN2727-S Chr9 5339006 Chr1 5500458 0 Translocation 0