FN2729-S Chr1 10347968 10347970 0 0 Deletion 2 upstream_gene_variant HET FN2729-S Chr1 10779952 10779952 0 0 Insertion 10 upstream_gene_variant HET FN2729-S Chr1 14045450 14045450 0 0 Insertion 8 upstream_gene_variant HET FN2729-S Chr1 16975172 16975173 0 0 Deletion 1 HET FN2729-S Chr1 19679082 19679088 0 0 Deletion 6 upstream_gene_variant HET FN2729-S Chr1 21632839 G-A 0 0 Single Base Substitution 0 HET FN2729-S Chr1 24636194 T-C 0 0 Single Base Substitution 0 Homo FN2729-S Chr1 24636194 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN2729-S Chr1 28209328 28209330 0 0 Deletion 2 Homo FN2729-S Chr1 28962461 C-T 0 0 Single Base Substitution 0 Homo FN2729-S Chr1 32924190 32924346 0 0 Inversion 0 LOC_Os01g56980 histidine acid phosphatase, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g58920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g58930 hypothetical protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g58950 cytochrome P450, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g58960 cytochrome P450, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g58970 cytochrome P450, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g58980 hypothetical protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g58990 cytochrome P450, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59000 cytochrome P450, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59009 expressed protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59020 cytochrome P450, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59030 expressed protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59040 expressed protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59050 cytochrome P450, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59060 50S ribosomal protein, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59070 expressed protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59080 expressed protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59090 thylakoid lumenal 20 kDa protein, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59100 cytokinin-N-glucosyltransferase 1, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59110 indole-3-acetate beta-glucosyltransferase, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59120 cyclin, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59130 proline-rich family protein, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59140 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59150 tubulin/FtsZ domain containing protein, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59160 UBA/TS-N domain containing protein, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59170 hypothetical protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59180 OsFBX27 - F-box domain containing protein, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59190 expressed protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59200 DUF617 domain containing protein, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59210 retrotransposon protein, putative, unclassified FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59220 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59230 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59240 expressed protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59250 expressed protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59265 expressed protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59280 retrotransposon protein, putative, unclassified FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59290 hypothetical protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59300 expressed protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59310 expressed protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59320 expressed protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59340 dihydropyrimidinase, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59350 transcription factor, putative, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59360 CAMK_CAMK_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59370 expressed protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59390 expressed protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59400 expressed protein FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59410 VQ motif family protein, expressed FN2729-S Chr1 34045001 34369000 0 0 Deletion 323999 LOC_Os01g59420 expressed protein FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g58920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g58930 hypothetical protein FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g58950 cytochrome P450, putative, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g58960 cytochrome P450, putative, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g58970 cytochrome P450, putative, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g58980 hypothetical protein FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g58990 cytochrome P450, putative, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59000 cytochrome P450, putative, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59009 expressed protein FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59020 cytochrome P450, putative, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59030 expressed protein FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59040 expressed protein FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59050 cytochrome P450, putative, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59060 50S ribosomal protein, putative, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59070 expressed protein FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59080 expressed protein FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59090 thylakoid lumenal 20 kDa protein, putative, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59100 cytokinin-N-glucosyltransferase 1, putative, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59110 indole-3-acetate beta-glucosyltransferase, putative, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59120 cyclin, putative, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59130 proline-rich family protein, putative, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59140 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59150 tubulin/FtsZ domain containing protein, putative, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59160 UBA/TS-N domain containing protein, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59170 hypothetical protein FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59180 OsFBX27 - F-box domain containing protein, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59190 expressed protein FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59200 DUF617 domain containing protein, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59210 retrotransposon protein, putative, unclassified FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59220 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59230 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59240 expressed protein FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59250 expressed protein FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59265 expressed protein FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59280 retrotransposon protein, putative, unclassified FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59290 hypothetical protein FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59300 expressed protein FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59310 expressed protein FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59320 expressed protein FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59340 dihydropyrimidinase, putative, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59350 transcription factor, putative, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59360 CAMK_CAMK_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN2729-S Chr1 34053001 34338000 0 0 Deletion 284999 LOC_Os01g59370 expressed protein FN2729-S Chr1 34270916 34270917 0 0 Deletion 1 upstream_gene_variant HET FN2729-S Chr1 34347001 34368000 0 0 Deletion 20999 LOC_Os01g59400 expressed protein FN2729-S Chr1 34347001 34368000 0 0 Deletion 20999 LOC_Os01g59410 VQ motif family protein, expressed FN2729-S Chr1 34347001 34368000 0 0 Deletion 20999 LOC_Os01g59420 expressed protein FN2729-S Chr1 35296180 35296184 0 0 Deletion 4 INTERGENIC HET FN2729-S Chr1 36765001 36780000 0 0 Deletion 14999 LOC_Os01g63470 C2 domain containing protein, expressed FN2729-S Chr1 36765001 36780000 0 0 Deletion 14999 LOC_Os01g63930 cytochrome P450, putative, expressed FN2729-S Chr1 36765001 36782000 0 0 Deletion 16999 LOC_Os01g63460 MYB family transcription factor, putative, expressed FN2729-S Chr1 36765001 36782000 0 0 Deletion 16999 LOC_Os01g63470 C2 domain containing protein, expressed FN2729-S Chr1 36793288 36793288 0 0 Insertion 10 upstream_gene_variant HET FN2729-S Chr1 37879178 37879179 0 0 Deletion 1 INTERGENIC HET FN2729-S Chr1 5726034 5726036 0 0 Deletion 2 HET FN2729-S Chr10 11323703 T-C 0 0 Single Base Substitution 0 HET FN2729-S Chr10 11323703 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr10 11551343 G-A 0 0 Single Base Substitution 0 HET FN2729-S Chr10 11551343 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr10 12635969 12635978 0 0 Deletion 9 CODON_DELETION HET LOC_Os10g24620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2729-S Chr10 15077092 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g28930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2729-S Chr10 20949319 C-G 0 0 Single Base Substitution 0 HET FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05570 receptor protein kinase-like, putative, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05580 expressed protein FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05590 OsFBX374 - F-box domain containing protein, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05600 thaumatin-like protein 1 precursor, putative, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05610 expressed protein FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05620 transposon protein, putative, unclassified, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05630 expressed protein FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05650 transposon protein, putative, unclassified, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05660 thaumatin, putative, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05680 expressed protein FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05690 transmembrane amino acid transporter protein, putative, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05695 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05700 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05710 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05720 LTPL37 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05730 armadillo/beta-catenin repeat family protein, putative, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05740 expressed protein FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05750 POEI3 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05770 expressed protein FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05780 POT domain containing peptide transporter, putative, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05790 POEI4 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05800 F-box protein family, AtFBL4, putative, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05810 transposon protein, putative, Mutator sub-class, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05820 POEI5 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2760001 2947000 0 0 Deletion 186999 LOC_Os10g05870 retrotransposon protein, putative, unclassified FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05560 expressed protein FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05570 receptor protein kinase-like, putative, expressed FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05580 expressed protein FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05590 OsFBX374 - F-box domain containing protein, expressed FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05600 thaumatin-like protein 1 precursor, putative, expressed FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05610 expressed protein FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05620 transposon protein, putative, unclassified, expressed FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05630 expressed protein FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05650 transposon protein, putative, unclassified, expressed FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05660 thaumatin, putative, expressed FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05680 expressed protein FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05690 transmembrane amino acid transporter protein, putative, expressed FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05695 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05700 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05710 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05720 LTPL37 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05730 armadillo/beta-catenin repeat family protein, putative, expressed FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05740 expressed protein FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05750 POEI3 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05770 expressed protein FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05780 POT domain containing peptide transporter, putative, expressed FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05790 POEI4 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05800 F-box protein family, AtFBL4, putative, expressed FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05810 transposon protein, putative, Mutator sub-class, expressed FN2729-S Chr10 2760001 2950000 0 0 Deletion 189999 LOC_Os10g05820 POEI5 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2761404 2762165 0 0 Inversion 0 LOC_Os10g05560 expressed protein FN2729-S Chr10 2761648 2762158 0 0 Inversion 0 LOC_Os10g05560 expressed protein FN2729-S Chr10 2960001 2978000 0 0 Deletion 17999 LOC_Os10g05860 POEI7 - Pollen Ole e I allergen and extensin family protein precursor, putative, expressed FN2729-S Chr10 2960001 2978000 0 0 Deletion 17999 LOC_Os10g05870 retrotransposon protein, putative, unclassified FN2729-S Chr10 2960001 2978000 0 0 Deletion 17999 LOC_Os10g05880 POEI8 - Pollen Ole e I allergen and extensin family protein precursor, putative, expressed FN2729-S Chr10 2960001 2978000 0 0 Deletion 17999 LOC_Os10g05890 expressed protein FN2729-S Chr10 2961001 2978000 0 0 Deletion 16999 LOC_Os10g05880 POEI8 - Pollen Ole e I allergen and extensin family protein precursor, putative, expressed FN2729-S Chr10 2961001 2978000 0 0 Deletion 16999 LOC_Os10g05890 expressed protein FN2729-S Chr10 2961001 2978000 0 0 Deletion 16999 LOC_Os10g05900 expressed protein FN2729-S Chr10 2981001 3062000 0 0 Deletion 80999 LOC_Os10g05910 POEI9 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2981001 3062000 0 0 Deletion 80999 LOC_Os10g05930 POEI10 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2981001 3062000 0 0 Deletion 80999 LOC_Os10g05940 expressed protein FN2729-S Chr10 2981001 3062000 0 0 Deletion 80999 LOC_Os10g05950 POEI11 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2981001 3062000 0 0 Deletion 80999 LOC_Os10g05960 hypothetical protein FN2729-S Chr10 2981001 3062000 0 0 Deletion 80999 LOC_Os10g05970 POEI12 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2981001 3062000 0 0 Deletion 80999 LOC_Os10g05980 POEI13 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2981001 3062000 0 0 Deletion 80999 LOC_Os10g05990 POEI14 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2981001 3062000 0 0 Deletion 80999 LOC_Os10g06000 POEI15 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2981001 3062000 0 0 Deletion 80999 LOC_Os10g06010 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr10 2981001 3062000 0 0 Deletion 80999 LOC_Os10g06020 expressed protein FN2729-S Chr10 2981001 3062000 0 0 Deletion 80999 LOC_Os10g06030 OsWAK103 - OsWAK receptor-like protein kinase, expressed FN2729-S Chr10 2982001 3059000 0 0 Deletion 76999 LOC_Os10g05910 POEI9 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2982001 3059000 0 0 Deletion 76999 LOC_Os10g05930 POEI10 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2982001 3059000 0 0 Deletion 76999 LOC_Os10g05940 expressed protein FN2729-S Chr10 2982001 3059000 0 0 Deletion 76999 LOC_Os10g05950 POEI11 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2982001 3059000 0 0 Deletion 76999 LOC_Os10g05960 hypothetical protein FN2729-S Chr10 2982001 3059000 0 0 Deletion 76999 LOC_Os10g05970 POEI12 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2982001 3059000 0 0 Deletion 76999 LOC_Os10g05980 POEI13 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2982001 3059000 0 0 Deletion 76999 LOC_Os10g05990 POEI14 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2982001 3059000 0 0 Deletion 76999 LOC_Os10g06000 POEI15 - Pollen Ole e I allergen and extensin family protein precursor, expressed FN2729-S Chr10 2982001 3059000 0 0 Deletion 76999 LOC_Os10g06010 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr10 2982001 3059000 0 0 Deletion 76999 LOC_Os10g06020 expressed protein FN2729-S Chr10 3058948 4031510 0 0 Inversion 0 FN2729-S Chr10 3058948 4031510 0 0 Inversion 972562 FN2729-S Chr10 4712092 C-G 0 0 Single Base Substitution 0 HET FN2729-S Chr10 4712092 C-G 0 0 Single Base Substitution 0 INTRON HET FN2729-S Chr10 5522056 5522323 0 0 Inversion 267 LOC_Os10g10110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2729-S Chr10 6161604 A-G 0 0 Single Base Substitution 0 HET FN2729-S Chr10 6235035 6235047 0 0 Deletion 12 INTRON HET FN2729-S Chr10 7470337 G-A 0 0 Single Base Substitution 0 HET FN2729-S Chr10 7470337 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr10 7485821 C-T 0 0 Single Base Substitution 0 HET FN2729-S Chr11 15677527 T-A 0 0 Single Base Substitution 0 Homo FN2729-S Chr11 15677527 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN2729-S Chr11 19443309 C-T 0 0 Single Base Substitution 0 HET FN2729-S Chr11 19748567 Chr6 5893166 0 Translocation 0 FN2729-S Chr11 23368404 Chr5 13251372 0 Translocation 0 FN2729-S Chr11 25694182 Chr10 9261636 0 Translocation 0 FN2729-S Chr11 25694526 Chr10 4031488 0 Translocation 0 FN2729-S Chr11 25706488 T-A 0 0 Single Base Substitution 0 HET FN2729-S Chr11 25706488 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr11 26982412 26982413 0 0 Deletion 1 downstream_gene_variant HET FN2729-S Chr11 6135697 Chr1 35969205 0 Translocation 0 FN2729-S Chr11 6458726 T-C 0 0 Single Base Substitution 0 HET FN2729-S Chr11 7846350 Chr6 16078486 0 Translocation 0 LOC_Os06g28310 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr11 7846350 Chr6 16078486 0 Translocation 0 LOC_Os11g14090 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr11 9517333 9517339 0 0 Deletion 6 HET FN2729-S Chr11 9517333 9517339 0 0 Deletion 6 INTRON HOMO FN2729-S Chr11 969648 A-T 0 0 Single Base Substitution 0 HET FN2729-S Chr11 969648 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr11 9861882 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr12 11356787 G-A 0 0 Single Base Substitution 0 HET FN2729-S Chr12 11356787 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2729-S Chr12 11488441 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g19720 retrotransposon protein, putative, Ty3-gypsy subclass FN2729-S Chr12 17178116 G-A 0 0 Single Base Substitution 0 HET FN2729-S Chr12 19144011 Chr5 18325140 0 Translocation 0 FN2729-S Chr12 20273415 20273417 0 0 Insertion 2 HET FN2729-S Chr12 23417167 23417171 0 0 Deletion 4 Homo FN2729-S Chr12 23417167 23417171 0 0 Deletion 4 INTERGENIC HOMO FN2729-S Chr12 24816125 24816133 0 0 Deletion 8 HET FN2729-S Chr12 24816125 24816133 0 0 Deletion 8 UTR_3_PRIME HET FN2729-S Chr12 8096864 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g14240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2729-S Chr12 8324054 G-A 0 0 Single Base Substitution 0 HET FN2729-S Chr12 9855012 T-A 0 0 Single Base Substitution 0 HET FN2729-S Chr2 10062556 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr2 13491001 13504000 0 0 Deletion 12999 LOC_Os02g22640 retrotransposon protein, putative, unclassified FN2729-S Chr2 13491001 13504000 0 0 Deletion 12999 LOC_Os02g22650 glycosyltransferase, putative, expressed FN2729-S Chr2 13491001 13504000 0 0 Deletion 12999 LOC_Os02g22660 retrotransposon protein, putative, unclassified FN2729-S Chr2 13491001 13504000 0 0 Deletion 12999 LOC_Os02g22670 retrotransposon, putative, centromere-specific, expressed FN2729-S Chr2 14012277 G-T 0 0 Single Base Substitution 0 HET FN2729-S Chr2 14012277 G-T 0 0 Single Base Substitution 0 INTRON HET FN2729-S Chr2 16294762 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g27520 transposon protein, putative, unclassified, expressed FN2729-S Chr2 3167463 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g06340 EH domain-containing protein 1, putative, expressed FN2729-S Chr2 32058510 T-A 0 0 Single Base Substitution 0 HET FN2729-S Chr3 11675304 A-C 0 0 Single Base Substitution 0 Homo FN2729-S Chr3 11675304 A-C 0 0 Single Base Substitution 0 INTRON HOMO FN2729-S Chr3 11675305 C-A 0 0 Single Base Substitution 0 Homo FN2729-S Chr3 11675305 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN2729-S Chr3 12858226 12858231 0 0 Deletion 5 Homo FN2729-S Chr3 12858226 12858231 0 0 Deletion 5 INTRON HOMO FN2729-S Chr3 19789352 G-T 0 0 Single Base Substitution 0 HET FN2729-S Chr3 21326837 21326837 0 0 Insertion 1 upstream_gene_variant HET FN2729-S Chr3 25761735 C-T 0 0 Single Base Substitution 0 Homo FN2729-S Chr3 25761735 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2729-S Chr3 28982499 28982499 0 0 Insertion 2 INTERGENIC HET FN2729-S Chr3 28982499 28982501 0 0 Insertion 2 HET FN2729-S Chr3 31068314 Chr1 16252169 0 Translocation 0 FN2729-S Chr3 34027507 G-A 0 0 Single Base Substitution 0 HET FN2729-S Chr3 34027507 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr3 35288532 C-A 0 0 Single Base Substitution 0 HET FN2729-S Chr4 11052243 11052243 0 0 Insertion 2 INTERGENIC HET FN2729-S Chr4 14547660 G-A 0 0 Single Base Substitution 0 Homo FN2729-S Chr4 15468028 C-T 0 0 Single Base Substitution 0 HET FN2729-S Chr4 16977819 16977819 0 0 Insertion 4 upstream_gene_variant HET FN2729-S Chr4 18468602 18468603 0 0 Deletion 1 INTRON HET FN2729-S Chr4 19406370 C-T 0 0 Single Base Substitution 0 HET FN2729-S Chr4 19406370 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr4 22771401 22771401 0 0 Insertion 12 downstream_gene_variant HET FN2729-S Chr4 22772961 C-A 0 0 Single Base Substitution 0 HET FN2729-S Chr4 22772961 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr4 23040975 T-G 0 0 Single Base Substitution 0 HET FN2729-S Chr4 23040975 T-G 0 0 Single Base Substitution 0 INTRON HET FN2729-S Chr4 25729965 A-T 0 0 Single Base Substitution 0 HET FN2729-S Chr4 25729965 A-T 0 0 Single Base Substitution 0 INTRON HET FN2729-S Chr4 29349180 29349182 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os04g49220 mitochondrial import inner membrane translocase subunit Tim, putative, expressed FN2729-S Chr4 29933990 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g50172 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr4 29933991 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g50172 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr5 10823678 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g18680 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2729-S Chr5 1329961 1329961 0 0 Insertion 1 frameshift_variant HET LOC_Os05g03280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2729-S Chr5 26344327 A-C 0 0 Single Base Substitution 0 HET FN2729-S Chr5 26344327 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr5 3579783 C-T 0 0 Single Base Substitution 0 Homo FN2729-S Chr5 5317001 A-T 0 0 Single Base Substitution 0 HET FN2729-S Chr5 5317001 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr5 6141914 T-A 0 0 Single Base Substitution 0 HET FN2729-S Chr5 6141914 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr5 6141915 C-A 0 0 Single Base Substitution 0 HET FN2729-S Chr5 6141915 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr5 7917874 Chr3 8412207 0 Translocation 0 FN2729-S Chr5 7917874 Chr3 8412207 0 Translocation 0 LOC_Os03g15370 ubiquitin fusion protein, putative, expressed FN2729-S Chr5 8256416 8256416 0 0 Insertion 1 intergenic_region HET FN2729-S Chr5 9301646 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g16400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2729-S Chr5 9989085 G-T 0 0 Single Base Substitution 0 HET FN2729-S Chr6 11000810 11000810 0 0 Insertion 1 upstream_gene_variant HET FN2729-S Chr6 12545870 12545871 0 0 Deletion 1 frameshift_variant HET LOC_Os06g21700 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr6 15044528 C-T 0 0 Single Base Substitution 0 HET FN2729-S Chr6 22189392 Chr4 24563559 0 Translocation 0 FN2729-S Chr6 22386679 T-C 0 0 Single Base Substitution 0 HET FN2729-S Chr6 22472065 22472065 0 0 Insertion 1 downstream_gene_variant HET FN2729-S Chr6 24395001 24395009 0 0 Deletion 8 upstream_gene_variant HET FN2729-S Chr6 27733178 A-T 0 0 Single Base Substitution 0 HET FN2729-S Chr6 27733178 A-T 0 0 Single Base Substitution 0 INTRON HET FN2729-S Chr6 4329483 4329581 0 0 Deletion 98 upstream_gene_variant HET FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10790 lectin-like receptor kinase, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10800 zinc finger family protein, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10810 phosphate carrier protein, mitochondrial precursor, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10820 helix-loop-helix DNA-binding domain containing protein, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10830 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10840 expressed protein FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10850 lipase, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10860 glucosyltransferase, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10870 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10880 bZIP transcription factor, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10890 sterol carrier protein-2, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10900 DELLA protein RGL3, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10910 xyloglucan fucosyltransferase, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10920 xyloglucan fucosyltransferase, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10930 xyloglucan fucosyltransferase, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10940 expressed protein FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10950 xyloglucan fucosyltransferase, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10960 xyloglucan fucosyltransferase, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10970 xyloglucan fucosyltransferase, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10980 xyloglucan fucosyltransferase, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g10990 DnaK family protein, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11010 eukaryotic aspartyl protease domain containing protein, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11020 tic22-like family domain containing protein, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11030 EF hand family protein, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11040 expressed protein FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11050 cyclin-dependent kinase inhibitor, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11060 expressed protein FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11070 expressed protein FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11080 hypothetical protein FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11090 CXE carboxylesterase, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11100 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11110 transposon protein, putative, unclassified, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11120 expressed protein FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11130 gibberellin receptor GID1L2, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11135 gibberellin receptor GID1L2, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11140 pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11150 DUF1645 domain containing protein, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11160 expressed protein FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11170 formin-binding protein-related, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11180 OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11190 OsPOP13 - Putative Prolyl Oligopeptidase homologue, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11200 12-oxophytodienoate reductase, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11210 12-oxophytodienoate reductase, putative, expressed FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11220 retrotransposon protein, putative, unclassified FN2729-S Chr6 5627001 5893000 0 0 Deletion 265999 LOC_Os06g11230 expressed protein FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10780 AP2 domain containing protein, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10790 lectin-like receptor kinase, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10800 zinc finger family protein, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10810 phosphate carrier protein, mitochondrial precursor, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10820 helix-loop-helix DNA-binding domain containing protein, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10830 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10840 expressed protein FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10850 lipase, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10860 glucosyltransferase, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10870 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10880 bZIP transcription factor, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10890 sterol carrier protein-2, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10900 DELLA protein RGL3, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10910 xyloglucan fucosyltransferase, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10920 xyloglucan fucosyltransferase, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10930 xyloglucan fucosyltransferase, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10940 expressed protein FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10950 xyloglucan fucosyltransferase, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10960 xyloglucan fucosyltransferase, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10970 xyloglucan fucosyltransferase, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10980 xyloglucan fucosyltransferase, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g10990 DnaK family protein, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11010 eukaryotic aspartyl protease domain containing protein, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11020 tic22-like family domain containing protein, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11030 EF hand family protein, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11040 expressed protein FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11050 cyclin-dependent kinase inhibitor, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11060 expressed protein FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11070 expressed protein FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11080 hypothetical protein FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11090 CXE carboxylesterase, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11100 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11110 transposon protein, putative, unclassified, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11120 expressed protein FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11130 gibberellin receptor GID1L2, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11135 gibberellin receptor GID1L2, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11140 pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11150 DUF1645 domain containing protein, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11160 expressed protein FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11170 formin-binding protein-related, putative, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11180 OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11190 OsPOP13 - Putative Prolyl Oligopeptidase homologue, expressed FN2729-S Chr6 5631001 5882000 0 0 Deletion 250999 LOC_Os06g11200 12-oxophytodienoate reductase, putative, expressed FN2729-S Chr6 5895001 5965000 0 0 Deletion 69999 LOC_Os06g11260 12-oxophytodienoate reductase 2, putative, expressed FN2729-S Chr6 5895001 5965000 0 0 Deletion 69999 LOC_Os06g11270 anthocyanidin 3-O-glucosyltransferase, putative, expressed FN2729-S Chr6 5895001 5965000 0 0 Deletion 69999 LOC_Os06g11280 12-oxophytodienoate reductase, putative, expressed FN2729-S Chr6 5895001 5965000 0 0 Deletion 69999 LOC_Os06g11290 12-oxophytodienoate reductase, putative, expressed FN2729-S Chr6 5895001 5965000 0 0 Deletion 69999 LOC_Os06g11300 CRR4, putative, expressed FN2729-S Chr6 5895001 5965000 0 0 Deletion 69999 LOC_Os06g11304 expressed protein FN2729-S Chr6 5895001 5965000 0 0 Deletion 69999 LOC_Os06g11308 hypothetical protein FN2729-S Chr6 5895001 5965000 0 0 Deletion 69999 LOC_Os06g11310 plastocyanin-like domain containing protein, putative, expressed FN2729-S Chr6 5895001 5965000 0 0 Deletion 69999 LOC_Os06g11320 peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed FN2729-S Chr6 5895001 5965000 0 0 Deletion 69999 LOC_Os06g11330 OsMADS55 - MADS-box family gene with MIKCc type-box, expressed FN2729-S Chr6 5895001 5965000 0 0 Deletion 69999 LOC_Os06g11350 retrotransposon protein, putative, unclassified FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11240 12-oxophytodienoate reductase, putative, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11260 12-oxophytodienoate reductase 2, putative, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11270 anthocyanidin 3-O-glucosyltransferase, putative, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11280 12-oxophytodienoate reductase, putative, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11290 12-oxophytodienoate reductase, putative, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11300 CRR4, putative, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11304 expressed protein FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11308 hypothetical protein FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11310 plastocyanin-like domain containing protein, putative, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11320 peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11330 OsMADS55 - MADS-box family gene with MIKCc type-box, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11340 retrotransposon protein, putative, unclassified FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11350 retrotransposon protein, putative, unclassified FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11360 expressed protein FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11370 mediator of RNA polymerase II transcription subunit 6, putative, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11380 geminivirus Rep-interacting motor protein, putative, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11390 expressed protein FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11400 expressed protein FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11410 cyclin, putative, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11420 SKIP/SNW domain containing protein, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11430 GRAM domain containing protein, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11440 transposon protein, putative, Mutator sub-class, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11450 zinc finger, C3HC4 type domain containing protein, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11460 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11470 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11480 hypothetical protein FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11490 plastocyanin-like domain containing protein, putative, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11500 MCM9 - Putative minichromosome maintenance MCM family subunit 9, expressed FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11510 expressed protein FN2729-S Chr6 5895001 6113000 0 0 Deletion 217999 LOC_Os06g11520 LMBR1 integral membrane protein, putative, expressed FN2729-S Chr6 5970001 6109000 0 0 Deletion 138999 LOC_Os06g11360 expressed protein FN2729-S Chr6 5970001 6109000 0 0 Deletion 138999 LOC_Os06g11370 mediator of RNA polymerase II transcription subunit 6, putative, expressed FN2729-S Chr6 5970001 6109000 0 0 Deletion 138999 LOC_Os06g11380 geminivirus Rep-interacting motor protein, putative, expressed FN2729-S Chr6 5970001 6109000 0 0 Deletion 138999 LOC_Os06g11390 expressed protein FN2729-S Chr6 5970001 6109000 0 0 Deletion 138999 LOC_Os06g11400 expressed protein FN2729-S Chr6 5970001 6109000 0 0 Deletion 138999 LOC_Os06g11410 cyclin, putative, expressed FN2729-S Chr6 5970001 6109000 0 0 Deletion 138999 LOC_Os06g11420 SKIP/SNW domain containing protein, expressed FN2729-S Chr6 5970001 6109000 0 0 Deletion 138999 LOC_Os06g11430 GRAM domain containing protein, expressed FN2729-S Chr6 5970001 6109000 0 0 Deletion 138999 LOC_Os06g11440 transposon protein, putative, Mutator sub-class, expressed FN2729-S Chr6 5970001 6109000 0 0 Deletion 138999 LOC_Os06g11450 zinc finger, C3HC4 type domain containing protein, expressed FN2729-S Chr6 5970001 6109000 0 0 Deletion 138999 LOC_Os06g11460 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr6 5970001 6109000 0 0 Deletion 138999 LOC_Os06g11470 retrotransposon protein, putative, unclassified, expressed FN2729-S Chr6 5970001 6109000 0 0 Deletion 138999 LOC_Os06g11480 hypothetical protein FN2729-S Chr6 5970001 6109000 0 0 Deletion 138999 LOC_Os06g11490 plastocyanin-like domain containing protein, putative, expressed FN2729-S Chr6 5970001 6109000 0 0 Deletion 138999 LOC_Os06g11500 MCM9 - Putative minichromosome maintenance MCM family subunit 9, expressed FN2729-S Chr6 5970001 6109000 0 0 Deletion 138999 LOC_Os06g11510 expressed protein FN2729-S Chr6 5970001 6109000 0 0 Deletion 138999 LOC_Os06g11520 LMBR1 integral membrane protein, putative, expressed FN2729-S Chr6 6110601 6713679 0 0 Inversion 0 FN2729-S Chr6 6110601 6713679 0 0 Inversion 603078 FN2729-S Chr6 7782657 T-A 0 0 Single Base Substitution 0 Homo FN2729-S Chr6 7782657 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN2729-S Chr7 16525832 T-C 0 0 Single Base Substitution 0 Homo FN2729-S Chr7 16525832 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2729-S Chr7 18921814 G-T 0 0 Single Base Substitution 0 Homo FN2729-S Chr7 18921814 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2729-S Chr7 19766393 C-T 0 0 Single Base Substitution 0 Homo FN2729-S Chr7 19766393 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2729-S Chr7 20321499 G-A 0 0 Single Base Substitution 0 HET FN2729-S Chr7 2572048 2572049 0 0 Insertion 1 HET FN2729-S Chr7 26122265 G-A 0 0 Single Base Substitution 0 Homo FN2729-S Chr7 26122265 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2729-S Chr7 26123544 26123612 0 0 Deletion 68 upstream_gene_variant HET FN2729-S Chr7 4427071 4427071 0 0 Insertion 2 INTERGENIC HET FN2729-S Chr7 5731836 5731836 0 0 Insertion 1 intergenic_region HET FN2729-S Chr7 6021662 6021673 0 0 Deletion 11 INTERGENIC HET FN2729-S Chr7 7937477 T-A 0 0 Single Base Substitution 0 HET FN2729-S Chr7 7937477 T-A 0 0 Single Base Substitution 0 INTRON HET FN2729-S Chr7 7937478 G-A 0 0 Single Base Substitution 0 HET FN2729-S Chr7 7937478 G-A 0 0 Single Base Substitution 0 INTRON HET FN2729-S Chr7 7937479 G-A 0 0 Single Base Substitution 0 INTRON HET FN2729-S Chr7 7938125 C-A 0 0 Single Base Substitution 0 HET FN2729-S Chr7 7938125 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr7 7938126 T-A 0 0 Single Base Substitution 0 HET FN2729-S Chr7 7938126 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr8 11943277 G-A 0 0 Single Base Substitution 0 HET FN2729-S Chr8 11972147 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g19990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2729-S Chr8 14189620 14189624 0 0 Deletion 4 HET FN2729-S Chr8 14189620 14189624 0 0 Deletion 4 INTRON HET FN2729-S Chr8 17063860 G-T 0 0 Single Base Substitution 0 HET FN2729-S Chr8 17063860 G-T 0 0 Single Base Substitution 0 INTRON HET FN2729-S Chr8 22509329 22509329 0 0 Insertion 1 intron_variant HET FN2729-S Chr8 27625588 27625590 0 0 Deletion 2 HET FN2729-S Chr8 7297314 7297315 0 0 Deletion 1 HET FN2729-S Chr8 7901863 7901867 0 0 Deletion 4 upstream_gene_variant HET FN2729-S Chr9 11739692 11739696 0 0 Deletion 4 FRAME_SHIFT HOMO LOC_Os09g19640 holocarboxylase synthetase, putative, expressed FN2729-S Chr9 11739692 11739696 0 0 Deletion 4 frameshift_variant Homo LOC_Os09g19640 holocarboxylase synthetase, putative, expressed FN2729-S Chr9 17758474 C-T 0 0 Single Base Substitution 0 HET FN2729-S Chr9 20207254 G-A 0 0 Single Base Substitution 0 Homo FN2729-S Chr9 20207254 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2729-S Chr9 4076048 C-T 0 0 Single Base Substitution 0 HET FN2729-S Chr9 4214406 T-A 0 0 Single Base Substitution 0 HET FN2729-S Chr9 4214406 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr9 5175425 T-C 0 0 Single Base Substitution 0 HET FN2729-S Chr9 5175425 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2729-S Chr9 5640990 C-T 0 0 Single Base Substitution 0 HET FN2729-S Chr9 5770956 5770966 0 0 Deletion 10 INTERGENIC HET FN2729-S Chr9 604732 Chr4 3063060 0 Translocation 0 FN2729-S Chr9 7068746 G-T 0 0 Single Base Substitution 0 HET FN2729-S Chr9 8170450 8170455 0 0 Deletion 5 Homo FN2729-S Chr9 8170450 8170455 0 0 Deletion 5 INTERGENIC HOMO FN2729-S Chr9 8226708 Chr2 11631204 0 Translocation 0 FN2729-S Chr9 8371633 G-A 0 0 Single Base Substitution 0 Homo FN2729-S Chr9 8371633 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2729-S Chr9 8908129 C-T 0 0 Single Base Substitution 0 HET FN2729-S Chr9 9711270 T-C 0 0 Single Base Substitution 0 Homo FN2729-S Chr9 9711270 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN2729-S Chr9 987222 987222 0 0 Insertion 10 upstream_gene_variant HET