FN2734-S Chr1 11278247 T-C 0 0 Single Base Substitution 0 HET FN2734-S Chr1 12650475 A-G 0 0 Single Base Substitution 0 HET FN2734-S Chr1 12650475 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr1 12847736 G-C 0 0 Single Base Substitution 0 HET FN2734-S Chr1 12847736 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr1 25149949 25149961 0 0 Deletion 12 Homo FN2734-S Chr1 25149949 25149961 0 0 Deletion 12 INTERGENIC HOMO FN2734-S Chr1 27080258 G-A 0 0 Single Base Substitution 0 HET FN2734-S Chr1 28494930 28494931 0 0 Deletion 1 upstream_gene_variant HET FN2734-S Chr1 29891551 T-C 0 0 Single Base Substitution 0 HET FN2734-S Chr1 33383655 C-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os01g57730 peroxidase precursor, putative, expressed FN2734-S Chr1 34557049 T-A 0 0 Single Base Substitution 0 HET FN2734-S Chr1 34557049 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr1 8655345 8655348 0 0 Deletion 3 upstream_gene_variant HET FN2734-S Chr1 9700559 9700559 0 0 Insertion 12 upstream_gene_variant HET FN2734-S Chr10 10704213 10704227 0 0 Deletion 14 HET FN2734-S Chr10 13069544 T-G 0 0 Single Base Substitution 0 HET FN2734-S Chr10 13069544 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr10 14064535 T-C 0 0 Single Base Substitution 0 HET FN2734-S Chr10 14064535 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr10 4316221 C-T 0 0 Single Base Substitution 0 Homo FN2734-S Chr10 4316221 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2734-S Chr11 13741899 13741910 0 0 Deletion 11 Homo FN2734-S Chr11 13741899 13741910 0 0 Deletion 11 INTERGENIC HOMO FN2734-S Chr11 16552809 G-T 0 0 Single Base Substitution 0 Homo FN2734-S Chr11 16552809 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2734-S Chr11 19519050 G-A 0 0 Single Base Substitution 0 HET FN2734-S Chr11 20225561 G-T 0 0 Single Base Substitution 0 INTRON HET FN2734-S Chr11 20261136 20261136 0 0 Insertion 2 INTERGENIC HET FN2734-S Chr11 21538320 A-C 0 0 Single Base Substitution 0 HET FN2734-S Chr11 23017128 Chr7 26765241 0 Translocation 0 FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41290 MrBTB5 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH-related domain, expressed FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41300 MBTB65 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41310 MBTB66 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41320 hypothetical protein FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41330 expressed protein FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41350 MBTB67 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41360 expressed protein FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41365 expressed protein FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41370 retrotransposon protein, putative, unclassified, expressed FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41380 transposon protein, putative, unclassified, expressed FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41390 expressed protein FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41400 expressed protein FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41410 expressed protein FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41420 expressed protein FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41440 retrotransposon protein, putative, unclassified, expressed FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41450 retrotransposon protein, putative, unclassified, expressed FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41460 retrotransposon protein, putative, unclassified, expressed FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41470 retrotransposon protein, putative, unclassified, expressed FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41500 NC domain-containing protein, putative, expressed FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41510 expressed protein FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41520 hypothetical protein FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41530 expressed protein FN2734-S Chr11 24749001 24918000 0 0 Deletion 168999 LOC_Os11g41540 disease resistance RPP8-like protein 3, putative, expressed FN2734-S Chr11 7036789 A-G 0 0 Single Base Substitution 0 HET FN2734-S Chr11 7499353 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr11 769700 Chr3 11386148 0 Translocation 0 FN2734-S Chr12 11849362 T-C 0 0 Single Base Substitution 0 HET FN2734-S Chr12 12676653 G-A 0 0 Single Base Substitution 0 HET FN2734-S Chr12 12676653 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr12 14933085 14933085 0 0 Insertion 8 downstream_gene_variant HET FN2734-S Chr12 1662775 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr12 17203645 17203645 0 0 Insertion 1 downstream_gene_variant HET FN2734-S Chr12 17837982 17837983 0 0 Deletion 1 Homo FN2734-S Chr12 17837982 17837983 0 0 Deletion 1 INTERGENIC HOMO FN2734-S Chr12 26234662 G-A 0 0 Single Base Substitution 0 HET FN2734-S Chr12 26234662 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr12 5447383 Chr8 27631863 0 Translocation 0 LOC_Os12g10310 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2734-S Chr12 7850533 A-T 0 0 Single Base Substitution 0 HET FN2734-S Chr12 7850533 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr12 9694988 Chr3 21846276 0 Translocation 0 FN2734-S Chr2 15438177 T-C 0 0 Single Base Substitution 0 Homo FN2734-S Chr2 15438177 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2734-S Chr2 17051534 17051536 0 0 Insertion 2 HET FN2734-S Chr2 24718898 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g40784 WAX2, putative, expressed FN2734-S Chr2 31839282 31839290 0 0 Deletion 8 Homo FN2734-S Chr2 31839282 31839290 0 0 Deletion 8 INTERGENIC HOMO FN2734-S Chr2 34560268 G-T 0 0 Single Base Substitution 0 HET FN2734-S Chr2 8123742 8123744 0 0 Deletion 2 downstream_gene_variant HET FN2734-S Chr2 9632208 9632209 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os02g16900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2734-S Chr2 9632208 9632209 0 0 Deletion 1 frameshift_variant Homo LOC_Os02g16900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2734-S Chr3 10813531 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr3 11487828 11487828 0 0 Insertion 2 INTERGENIC HET FN2734-S Chr3 11487828 11487831 0 0 Insertion 3 HET FN2734-S Chr3 20304634 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g36620 retrotransposon protein, putative, unclassified, expressed FN2734-S Chr3 21858383 G-A 0 0 Single Base Substitution 0 HET FN2734-S Chr3 21858383 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr3 22374396 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g40260 Regulator of chromosome condensation domain containing protein, expressed FN2734-S Chr3 25188049 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr3 25195675 25195675 0 0 Insertion 6 upstream_gene_variant HET FN2734-S Chr3 35110125 35110126 0 0 Deletion 1 Homo FN2734-S Chr3 35110125 35110126 0 0 Deletion 1 INTRON HOMO FN2734-S Chr3 35246336 G-A 0 0 Single Base Substitution 0 HET FN2734-S Chr3 5028182 5028182 0 0 Insertion 1 intergenic_region HET FN2734-S Chr3 9915432 9915435 0 0 Insertion 3 HET FN2734-S Chr4 10948993 G-T 0 0 Single Base Substitution 0 HET FN2734-S Chr4 13449912 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr4 18062159 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g30260 OsWAK47 - OsWAK receptor-like protein kinase, expressed FN2734-S Chr4 18441001 18452000 0 0 Deletion 10999 LOC_Os04g30860 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN2734-S Chr4 18441001 18452000 0 0 Deletion 10999 LOC_Os04g30870 transposon protein, putative, unclassified, expressed FN2734-S Chr4 28285594 G-A 0 0 Single Base Substitution 0 HET FN2734-S Chr4 28285594 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr4 30357264 30357265 0 0 Deletion 1 upstream_gene_variant HET FN2734-S Chr4 30832060 G-A 0 0 Single Base Substitution 0 HET FN2734-S Chr4 30832060 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr4 32554406 G-A 0 0 Single Base Substitution 0 HET FN2734-S Chr4 4223312 C-G 0 0 Single Base Substitution 0 Homo FN2734-S Chr4 4223312 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2734-S Chr4 5873710 G-A 0 0 Single Base Substitution 0 HET FN2734-S Chr4 6596744 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr4 7725022 7725022 0 0 Insertion 1 upstream_gene_variant HET FN2734-S Chr4 7859118 Chr2 21394561 0 Translocation 0 FN2734-S Chr4 9968328 Chr3 19375458 0 Translocation 0 LOC_Os04g18040 retrotransposon protein, putative, unclassified FN2734-S Chr5 13378398 C-A 0 0 Single Base Substitution 0 INTRON HET FN2734-S Chr5 13956082 13956084 0 0 Deletion 2 HET FN2734-S Chr5 14913443 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr5 16522341 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr5 28121687 C-A 0 0 Single Base Substitution 0 HET FN2734-S Chr5 29128123 G-T 0 0 Single Base Substitution 0 HET FN2734-S Chr5 29128123 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr5 3321820 A-G 0 0 Single Base Substitution 0 HET FN2734-S Chr5 3321820 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr5 4033493 4033494 0 0 Deletion 1 upstream_gene_variant HET FN2734-S Chr5 5475800 G-T 0 0 Single Base Substitution 0 HET FN2734-S Chr5 5475800 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr5 9570569 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g16800 retrotransposon protein, putative, unclassified, expressed FN2734-S Chr6 13489359 13489360 0 0 Deletion 1 Homo FN2734-S Chr6 13489359 13489360 0 0 Deletion 1 INTRON HOMO FN2734-S Chr6 13993736 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr6 15148376 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g25900 retrotransposon protein, putative, unclassified, expressed FN2734-S Chr6 15952311 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr6 15952312 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr6 1634534 Chr4 35463349 0 Translocation 0 FN2734-S Chr6 19430213 Chr1 18784262 0 Translocation 0 LOC_Os06g33350 plant protein of unknown function domain containing protein, expressed FN2734-S Chr6 19651057 C-T 0 0 Single Base Substitution 0 Homo FN2734-S Chr6 19651057 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2734-S Chr6 21368305 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr6 26364361 A-G 0 0 Single Base Substitution 0 HET FN2734-S Chr6 27473390 27473402 0 0 Deletion 12 Homo FN2734-S Chr6 27473390 27473402 0 0 Deletion 12 INTRON HOMO FN2734-S Chr6 3934057 A-C 0 0 Single Base Substitution 0 HET FN2734-S Chr6 5264937 5264944 0 0 Deletion 7 INTRON HET FN2734-S Chr6 6441187 T-C 0 0 Single Base Substitution 0 HET FN2734-S Chr6 6441187 T-C 0 0 Single Base Substitution 0 INTRON HET FN2734-S Chr6 9441417 G-A 0 0 Single Base Substitution 0 HET FN2734-S Chr7 16004526 C-T 0 0 Single Base Substitution 0 HET FN2734-S Chr7 16170063 G-A 0 0 Single Base Substitution 0 HET FN2734-S Chr7 16170063 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2734-S Chr7 19013135 19013149 0 0 Deletion 14 Homo FN2734-S Chr7 19013135 19013149 0 0 Deletion 14 INTERGENIC HOMO FN2734-S Chr7 29675824 T-A 0 0 Single Base Substitution 0 HET FN2734-S Chr7 29675824 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr7 3588259 3588266 0 0 Deletion 7 UTR_3_PRIME HET FN2734-S Chr8 1109001 1118000 0 0 Deletion 8999 LOC_Os08g02670 ATP binding protein, putative, expressed FN2734-S Chr8 1109001 1118000 0 0 Deletion 8999 LOC_Os08g02680 expressed protein FN2734-S Chr8 1109001 1118000 0 0 Deletion 8999 LOC_Os08g03800 retrotransposon protein, putative, Ty1-copia subclass FN2734-S Chr8 15891074 A-G 0 0 Single Base Substitution 0 HET FN2734-S Chr8 15891074 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr8 17879250 17879250 0 0 Insertion 6 intron_variant HET FN2734-S Chr8 25381036 25381036 0 0 Insertion 4 5_prime_UTR_variant HET FN2734-S Chr8 26223202 T-A 0 0 Single Base Substitution 0 INTRON HET FN2734-S Chr8 27225894 T-C 0 0 Single Base Substitution 0 Homo FN2734-S Chr8 27225894 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2734-S Chr8 2836067 2836069 0 0 Deletion 2 HET FN2734-S Chr8 2836067 2836069 0 0 Deletion 2 INTERGENIC HET FN2734-S Chr8 5173800 Chr6 7992798 0 Translocation 0 LOC_Os08g08890 expressed protein FN2734-S Chr8 5744781 A-C 0 0 Single Base Substitution 0 HET FN2734-S Chr8 5744781 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr8 5797183 5797193 0 0 Deletion 10 HET FN2734-S Chr8 6219807 6219818 0 0 Deletion 11 HET FN2734-S Chr8 9297474 G-A 0 0 Single Base Substitution 0 HET FN2734-S Chr8 9297474 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr8 9462497 9462500 0 0 Deletion 3 HET FN2734-S Chr9 16105212 16105214 0 0 Deletion 2 downstream_gene_variant HET FN2734-S Chr9 16784631 T-G 0 0 Single Base Substitution 0 HET FN2734-S Chr9 16784631 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr9 20872499 C-A 0 0 Single Base Substitution 0 HET FN2734-S Chr9 20872499 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr9 22288478 G-A 0 0 Single Base Substitution 0 HET FN2734-S Chr9 22288478 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2734-S Chr9 22769246 A-C 0 0 Single Base Substitution 0 HET FN2734-S Chr9 5133477 C-A 0 0 Single Base Substitution 0 HET FN2734-S Chr9 5133477 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2734-S Chr9 7815617 C-T 0 0 Single Base Substitution 0 HET FN2734-S Chr9 8340088 C-T 0 0 Single Base Substitution 0 HET