FN2735-S Chr1 10884004 10884006 0 0 Deletion 2 upstream_gene_variant HET FN2735-S Chr1 11281091 11281091 0 0 Insertion 1 upstream_gene_variant HET FN2735-S Chr1 16220855 16220855 0 0 Insertion 1 upstream_gene_variant HET FN2735-S Chr1 19621410 19621410 0 0 Insertion 1 upstream_gene_variant HET FN2735-S Chr1 23401001 23401001 0 0 Insertion 6 upstream_gene_variant HET FN2735-S Chr1 23494088 23494093 0 0 Deletion 5 upstream_gene_variant HET FN2735-S Chr1 26678442 26678442 0 0 Insertion 1 upstream_gene_variant HET FN2735-S Chr1 27387925 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g47840 S-locus-like receptor protein kinase, putative, expressed FN2735-S Chr1 27387925 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os01g47840 S-locus-like receptor protein kinase, putative, expressed FN2735-S Chr1 2906206 2906207 0 0 Deletion 1 upstream_gene_variant HET FN2735-S Chr1 33860431 33860431 0 0 Insertion 1 upstream_gene_variant HET FN2735-S Chr1 36921033 36921034 0 0 Deletion 1 upstream_gene_variant HET FN2735-S Chr1 37206411 37206429 0 0 Deletion 18 upstream_gene_variant HET FN2735-S Chr1 5763183 5763189 0 0 Insertion 6 HET FN2735-S Chr1 616894 C-T 0 0 Single Base Substitution 0 HET FN2735-S Chr1 8272420 T-G 0 0 Single Base Substitution 0 HET FN2735-S Chr1 8272420 T-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2735-S Chr1 9168536 G-A 0 0 Single Base Substitution 0 Homo FN2735-S Chr1 9168536 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2735-S Chr1 992250 992295 0 0 Deletion 45 downstream_gene_variant HET FN2735-S Chr10 1280514 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g03070 retrotransposon protein, putative, unclassified, expressed FN2735-S Chr10 15534467 15534489 0 0 Deletion 22 upstream_gene_variant HET FN2735-S Chr10 18877063 18877063 0 0 Insertion 12 upstream_gene_variant HET FN2735-S Chr10 20165813 Chr4 31852132 0 Translocation 0 FN2735-S Chr10 20977113 20977113 0 0 Insertion 1 upstream_gene_variant HET FN2735-S Chr10 22621280 22621282 0 0 Deletion 2 downstream_gene_variant HET FN2735-S Chr10 4415597 C-T 0 0 Single Base Substitution 0 HET FN2735-S Chr10 518604 518605 0 0 Deletion 1 HET FN2735-S Chr10 5857326 5857327 0 0 Deletion 1 downstream_gene_variant HET FN2735-S Chr10 6538384 Chr4 9746190 0 Translocation 0 FN2735-S Chr10 6931317 A-T 0 0 Single Base Substitution 0 HET FN2735-S Chr10 6931317 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2735-S Chr10 8728114 8728115 0 0 Deletion 1 HET FN2735-S Chr11 16827494 Chr10 2906715 0 Translocation 0 LOC_Os10g05770 expressed protein FN2735-S Chr11 17738876 17738877 0 0 Deletion 1 Homo FN2735-S Chr11 18177016 Chr8 17758093 0 Translocation 0 FN2735-S Chr11 22502094 Chr10 3012238 0 Translocation 0 LOC_Os11g37950 WIP3 - Wound-induced protein precursor, expressed FN2735-S Chr11 26895145 26895146 0 0 Deletion 1 INTERGENIC HET FN2735-S Chr11 5592997 C-T 0 0 Single Base Substitution 0 Homo FN2735-S Chr11 5592997 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN2735-S Chr11 728649 Chr2 13225552 0 Translocation 0 FN2735-S Chr11 728649 Chr2 13225552 0 Translocation 0 LOC_Os02g22190 glycosyltransferase, putative, expressed FN2735-S Chr11 959677 963747 0 0 Inversion 0 FN2735-S Chr12 11058664 Chr8 15320629 0 Translocation 0 FN2735-S Chr12 11861800 Chr11 1474966 0 Translocation 0 FN2735-S Chr12 12035144 12035309 0 0 Deletion 165 intergenic_region HET FN2735-S Chr12 12547956 Chr10 18187587 0 Translocation 0 LOC_Os12g22260 retrotransposon protein, putative, unclassified, expressed FN2735-S Chr12 17047000 C-G 0 0 Single Base Substitution 0 HET FN2735-S Chr12 17047000 C-G 0 0 Single Base Substitution 0 INTRON HET FN2735-S Chr12 18817390 18817390 0 0 Insertion 1 upstream_gene_variant HET FN2735-S Chr12 20096544 Chr6 23395012 0 Translocation 0 FN2735-S Chr12 21494618 Chr11 17511549 0 Translocation 0 FN2735-S Chr12 22003598 Chr2 33566140 0 Translocation 0 FN2735-S Chr12 26916650 Chr2 17337443 0 Translocation 0 FN2735-S Chr12 27085284 Chr11 18154422 0 Translocation 0 FN2735-S Chr12 8895880 8895882 0 0 Deletion 2 downstream_gene_variant HET FN2735-S Chr12 9201439 G-T 0 0 Single Base Substitution 0 HET FN2735-S Chr2 13051627 13051629 0 0 Deletion 2 upstream_gene_variant HET FN2735-S Chr2 18249663 Chr1 15324159 0 Translocation 0 FN2735-S Chr2 20070677 20070683 0 0 Deletion 6 HET FN2735-S Chr2 21223671 21223671 0 0 Insertion 1 upstream_gene_variant HET FN2735-S Chr2 23353062 23353062 0 0 Insertion 1 upstream_gene_variant HET FN2735-S Chr2 28384425 28384446 0 0 Deletion 21 upstream_gene_variant HET FN2735-S Chr2 32872840 G-A 0 0 Single Base Substitution 0 HET FN2735-S Chr2 32872840 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2735-S Chr2 35082389 C-T 0 0 Single Base Substitution 0 HET FN2735-S Chr2 35082389 C-T 0 0 Single Base Substitution 0 INTRON HET FN2735-S Chr2 3819903 3819904 0 0 Deletion 1 upstream_gene_variant HET FN2735-S Chr2 4780196 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g09280 expressed protein FN2735-S Chr2 5699213 5699213 0 0 Insertion 6 upstream_gene_variant HET FN2735-S Chr2 9139264 9139264 0 0 Insertion 1 frameshift_variant HET LOC_Os02g16060 RGA-1, putative, expressed FN2735-S Chr3 11934805 G-C 0 0 Single Base Substitution 0 Homo FN2735-S Chr3 11934805 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2735-S Chr3 12206509 12206510 0 0 Deletion 1 upstream_gene_variant HET FN2735-S Chr3 12206713 12206714 0 0 Deletion 1 upstream_gene_variant HET FN2735-S Chr3 133457 133458 0 0 Deletion 1 upstream_gene_variant HET FN2735-S Chr3 21049440 G-A 0 0 Single Base Substitution 0 HET FN2735-S Chr3 21049440 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2735-S Chr3 21049441 C-A 0 0 Single Base Substitution 0 HET FN2735-S Chr3 21049441 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2735-S Chr3 22719043 C-A 0 0 Single Base Substitution 0 HET FN2735-S Chr3 22719043 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2735-S Chr3 22719044 T-A 0 0 Single Base Substitution 0 HET FN2735-S Chr3 22719044 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2735-S Chr3 26061955 26061956 0 0 Deletion 1 frameshift_variant HET LOC_Os03g46080 transposon protein, putative, unclassified, expressed FN2735-S Chr3 28326449 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2735-S Chr3 30999477 Chr1 19980757 0 Translocation 0 LOC_Os01g36110 expressed protein FN2735-S Chr3 30999477 Chr1 19980757 0 Translocation 0 LOC_Os03g54070 expressed protein FN2735-S Chr3 34199001 34262000 0 0 Deletion 62999 LOC_Os03g60140 U-box domain-containing protein, putative, expressed FN2735-S Chr3 34199001 34262000 0 0 Deletion 62999 LOC_Os03g60150 protein kinase domain containing protein, expressed FN2735-S Chr3 34199001 34262000 0 0 Deletion 62999 LOC_Os03g60170 expressed protein FN2735-S Chr3 34199001 34262000 0 0 Deletion 62999 LOC_Os03g60180 GTPase of unknown function domain containing protein, putative, expressed FN2735-S Chr3 34199001 34262000 0 0 Deletion 62999 LOC_Os03g60190 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed FN2735-S Chr3 34199001 34262000 0 0 Deletion 62999 LOC_Os03g60200 pentatricopeptide, putative, expressed FN2735-S Chr3 34199001 34262000 0 0 Deletion 62999 LOC_Os03g60210 DUF567 domain containing protein, putative, expressed FN2735-S Chr3 34199001 34262000 0 0 Deletion 62999 LOC_Os03g60220 DUF567 domain containing protein, putative, expressed FN2735-S Chr3 34199001 34262000 0 0 Deletion 62999 LOC_Os03g60230 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2735-S Chr3 34199001 34262000 0 0 Deletion 62999 LOC_Os03g60240 SCAR-like protein 1, putative, expressed FN2735-S Chr3 34201001 34261000 0 0 Deletion 59999 LOC_Os03g60150 protein kinase domain containing protein, expressed FN2735-S Chr3 34201001 34261000 0 0 Deletion 59999 LOC_Os03g60170 expressed protein FN2735-S Chr3 34201001 34261000 0 0 Deletion 59999 LOC_Os03g60180 GTPase of unknown function domain containing protein, putative, expressed FN2735-S Chr3 34201001 34261000 0 0 Deletion 59999 LOC_Os03g60190 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed FN2735-S Chr3 34201001 34261000 0 0 Deletion 59999 LOC_Os03g60200 pentatricopeptide, putative, expressed FN2735-S Chr3 34201001 34261000 0 0 Deletion 59999 LOC_Os03g60210 DUF567 domain containing protein, putative, expressed FN2735-S Chr3 34201001 34261000 0 0 Deletion 59999 LOC_Os03g60220 DUF567 domain containing protein, putative, expressed FN2735-S Chr3 34201001 34261000 0 0 Deletion 59999 LOC_Os03g60230 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2735-S Chr3 34201001 34261000 0 0 Deletion 59999 LOC_Os03g60240 SCAR-like protein 1, putative, expressed FN2735-S Chr3 34201001 34261000 0 0 Deletion 59999 LOC_Os03g60430 AP2 domain containing protein, expressed FN2735-S Chr3 35300731 Chr2 16481527 0 Translocation 0 FN2735-S Chr3 35300731 Chr2 16481527 0 Translocation 0 LOC_Os02g27830 expressed protein FN2735-S Chr3 5625085 T-C 0 0 Single Base Substitution 0 Homo FN2735-S Chr3 5625085 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2735-S Chr3 8739209 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2735-S Chr4 11967 C-T 0 0 Single Base Substitution 0 HET FN2735-S Chr4 12686839 12686840 0 0 Deletion 1 Homo FN2735-S Chr4 14619868 14619885 0 0 Deletion 17 upstream_gene_variant HET FN2735-S Chr4 19146715 Chr3 17621955 0 Translocation 0 FN2735-S Chr4 1937797 1937798 0 0 Deletion 1 downstream_gene_variant HET FN2735-S Chr4 19611566 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g32580 expressed protein FN2735-S Chr4 26597673 26597673 0 0 Insertion 1 upstream_gene_variant HET FN2735-S Chr4 28033918 28033918 0 0 Insertion 1 upstream_gene_variant HET FN2735-S Chr4 28193306 C-A 0 0 Single Base Substitution 0 Homo FN2735-S Chr4 28193306 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN2735-S Chr4 29551232 29551348 0 0 Deletion 116 HET FN2735-S Chr4 5306107 5306116 0 0 Deletion 9 Homo FN2735-S Chr5 13212615 13212615 0 0 Insertion 1 downstream_gene_variant HET FN2735-S Chr5 17503644 17503644 0 0 Insertion 6 upstream_gene_variant HET FN2735-S Chr5 18271745 Chr4 28907054 0 Translocation 0 FN2735-S Chr5 19407161 G-T 0 0 Single Base Substitution 0 HET FN2735-S Chr5 19407161 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2735-S Chr5 22014692 22014693 0 0 Deletion 1 downstream_gene_variant HET FN2735-S Chr5 2405200 2405201 0 0 Deletion 1 HET FN2735-S Chr5 29750609 29750609 0 0 Insertion 8 upstream_gene_variant HET FN2735-S Chr5 9565373 9565374 0 0 Deletion 1 downstream_gene_variant HET FN2735-S Chr5 9908248 9908249 0 0 Deletion 1 upstream_gene_variant HET FN2735-S Chr6 11110065 11110065 0 0 Insertion 1 upstream_gene_variant HET FN2735-S Chr6 11976900 T-C 0 0 Single Base Substitution 0 HET FN2735-S Chr6 11976900 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2735-S Chr6 11976901 A-T 0 0 Single Base Substitution 0 HET FN2735-S Chr6 11976901 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2735-S Chr6 11976902 C-T 0 0 Single Base Substitution 0 HET FN2735-S Chr6 11976902 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2735-S Chr6 12769637 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2735-S Chr6 14040088 14040089 0 0 Deletion 1 downstream_gene_variant HET FN2735-S Chr6 14459837 Chr4 8661879 0 Translocation 0 FN2735-S Chr6 16715294 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g29260 retrotransposon protein, putative, unclassified, expressed FN2735-S Chr6 19268947 Chr1 15459835 0 Translocation 0 FN2735-S Chr6 19641970 19641971 0 0 Deletion 1 splice_region_variant&intron_variant HET FN2735-S Chr6 19967524 19967527 0 0 Insertion 3 HET FN2735-S Chr6 20520242 Chr1 878755 0 Translocation 0 FN2735-S Chr6 23802805 Chr3 4986014 0 Translocation 0 FN2735-S Chr6 31190382 T-G 0 0 Single Base Substitution 0 Homo FN2735-S Chr6 31190382 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2735-S Chr6 3287783 3287789 0 0 Deletion 6 CODON_CHANGE_PLUS_CODON_DELETION HOMO LOC_Os06g06930 receptor-like protein kinase, putative, expressed FN2735-S Chr6 3287783 3287789 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os06g06930 receptor-like protein kinase, putative, expressed FN2735-S Chr6 8735655 G-T 0 0 Single Base Substitution 0 Homo FN2735-S Chr6 8735655 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2735-S Chr6 9699199 C-A 0 0 Single Base Substitution 0 HET FN2735-S Chr7 11447635 11447636 0 0 Deletion 1 downstream_gene_variant HET FN2735-S Chr7 12166680 12166681 0 0 Deletion 1 HET FN2735-S Chr7 12169778 12169779 0 0 Deletion 1 intergenic_region HET FN2735-S Chr7 1503924 Chr4 3249683 0 Translocation 0 FN2735-S Chr7 17305022 17305023 0 0 Deletion 1 upstream_gene_variant HET FN2735-S Chr7 18715623 Chr1 2892092 0 Translocation 0 LOC_Os07g31530 retrotransposon protein, putative, unclassified, expressed FN2735-S Chr7 26050686 26050686 0 0 Insertion 1 upstream_gene_variant HET FN2735-S Chr7 3694378 Chr4 3213554 0 Translocation 0 FN2735-S Chr7 5440325 Chr6 7372684 0 Translocation 0 FN2735-S Chr8 10456913 10456941 0 0 Deletion 28 upstream_gene_variant HET FN2735-S Chr8 10714504 10714506 0 0 Insertion 2 HET FN2735-S Chr8 12265008 G-C 0 0 Single Base Substitution 0 HET FN2735-S Chr8 12265008 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2735-S Chr8 12584371 12584372 0 0 Deletion 1 upstream_gene_variant HET FN2735-S Chr8 15304149 15304150 0 0 Deletion 1 frameshift_variant HET LOC_Os08g25190 retrotransposon protein, putative, unclassified, expressed FN2735-S Chr8 17547260 17547260 0 0 Insertion 1 intergenic_region HET FN2735-S Chr8 18074316 Chr1 18737722 0 Translocation 0 LOC_Os01g34040 retrotransposon protein, putative, unclassified, expressed FN2735-S Chr8 1911419 1911421 0 0 Deletion 2 upstream_gene_variant HET FN2735-S Chr8 19690453 Chr6 13904217 0 Translocation 0 FN2735-S Chr8 20135621 Chr1 2999829 0 Translocation 0 FN2735-S Chr8 24481451 24481451 0 0 Insertion 3 upstream_gene_variant HET FN2735-S Chr8 26672356 26672357 0 0 Deletion 1 upstream_gene_variant HET FN2735-S Chr8 26736967 26736973 0 0 Deletion 6 downstream_gene_variant HET FN2735-S Chr8 2694146 Chr1 16146323 0 Translocation 0 FN2735-S Chr8 26986863 A-C 0 0 Single Base Substitution 0 HET FN2735-S Chr8 26986863 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2735-S Chr8 4252392 4252457 0 0 Deletion 65 HET FN2735-S Chr8 4932614 4932614 0 0 Insertion 1 frameshift_variant HET LOC_Os08g08550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2735-S Chr8 5192175 5192175 0 0 Insertion 3 INTERGENIC HET FN2735-S Chr8 5192175 5192182 0 0 Insertion 7 HET FN2735-S Chr8 7283058 7283059 0 0 Deletion 1 downstream_gene_variant HET FN2735-S Chr8 7779656 C-T 0 0 Single Base Substitution 0 HET FN2735-S Chr8 7820676 Chr1 8343013 0 Translocation 0 FN2735-S Chr9 10011417 10011417 0 0 Insertion 1 intron_variant HET FN2735-S Chr9 11015974 11015980 0 0 Deletion 6 Homo FN2735-S Chr9 11015974 11015980 0 0 Deletion 6 INTERGENIC HOMO FN2735-S Chr9 16501564 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g27135 expressed protein FN2735-S Chr9 22299529 Chr2 21647280 0 Translocation 0 FN2735-S Chr9 4759101 4759106 0 0 Deletion 5 HET FN2735-S Chr9 7218440 Chr2 4247059 0 Translocation 0 FN2735-S Chr9 7228101 Chr6 7358335 0 Translocation 0