FN2739-S Chr1 11136321 G-A 0 0 Single Base Substitution 0 Homo FN2739-S Chr1 12513187 G-A 0 0 Single Base Substitution 0 Homo FN2739-S Chr1 21428496 C-G 0 0 Single Base Substitution 0 Homo FN2739-S Chr1 24192724 24192726 0 0 Deletion 2 frameshift_variant Homo LOC_Os01g42540 ENT domain containing protein, expressed FN2739-S Chr1 30354367 30354375 0 0 Deletion 8 HET FN2739-S Chr1 3387815 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os01g07170 HORMA domain containing protein, putative, expressed FN2739-S Chr1 3655391 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os01g07600 expressed protein FN2739-S Chr1 38230734 38230737 0 0 Deletion 3 HET FN2739-S Chr1 5201517 5201532 0 0 Deletion 15 HET FN2739-S Chr1 7058170 T-C 0 0 Single Base Substitution 0 Homo FN2739-S Chr1 8570666 8570672 0 0 Deletion 6 Homo FN2739-S Chr10 13703828 13703829 0 0 Insertion 1 HET FN2739-S Chr10 18688413 C-T 0 0 Single Base Substitution 0 HET FN2739-S Chr10 429390 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os10g01640 decarboxylase, putative, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08006 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08010 expressed protein FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08011 expressed protein FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08014 white-brown complex homolog protein 11, putative, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08018 expressed protein FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08022 fructose-bisphospate aldolase isozyme, putative, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08026 lecithin:cholesterol acyltransferase, putative, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08030 retrotransposon protein, putative, Ty3-gypsy subclass FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08050 lecithine cholesterol acyltransferase, putative, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08060 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08070 retrotransposon protein, putative, unclassified, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08090 retrotransposon protein, putative, Ty3-gypsy subclass FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08100 retrotransposon protein, putative, unclassified, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08110 retrotransposon protein, putative, Ty3-gypsy subclass FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08130 retrotransposon protein, putative, unclassified, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08140 transposon protein, putative, CACTA, En/Spm sub-class FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08150 transposon protein, putative, CACTA, En/Spm sub-class FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08170 expressed protein FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08200 retrotransposon protein, putative, Ty3-gypsy subclass FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08210 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08220 expressed protein FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08230 retrotransposon, putative, centromere-specific, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08240 retrotransposon, putative, centromere-specific, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08280 DNA binding protein, putative, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08290 expressed protein FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08300 retrotransposon protein, putative, unclassified FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08319 cytochrome P450, putative, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08340 retrotransposon, putative, centromere-specific, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08350 transposon protein, putative, CACTA, En/Spm sub-class FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08360 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08400 expressed protein FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08410 retrotransposon protein, putative, unclassified, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08420 retrotransposon protein, putative, unclassified, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08430 hypothetical protein FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08440 expressed protein FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08450 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08460 expressed protein FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08474 cytochrome P450, putative, expressed FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08490 expressed protein FN2739-S Chr10 4311001 4613000 0 0 Deletion 301999 LOC_Os10g08500 retrotransposon protein, putative, unclassified, expressed FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08530 expressed protein FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08540 cytochrome P450, putative, expressed FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08550 enolase, putative, expressed FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08560 retrotransposon protein, putative, Ty3-gypsy subclass FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08570 RNA recognition motif family protein, expressed FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08580 FAD binding domain of DNA photolyase domain containing protein, expressed FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08590 expressed protein FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08599 expressed protein FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08610 expressed protein FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08620 chalcone and stilbene synthases, putative, expressed FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08630 expressed protein FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08640 expressed protein FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08670 chalcone synthase, putative, expressed FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08680 conserved hypothetical protein FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08690 retrotransposon protein, putative, unclassified, expressed FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08696 retrotransposon protein, putative, Ty3-gypsy subclass FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08702 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08710 chalcone synthase, putative, expressed FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08720 hypothetical protein FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08730 expressed protein FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08740 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08750 expressed protein FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08754 expressed protein FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08760 hypothetical protein FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08780 expressed protein FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08790 expressed protein FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08800 retrotransposon protein, putative, Ty3-gypsy subclass FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08810 retrotransposon protein, putative, Ty3-gypsy subclass FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08830 expressed protein FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08840 hydrolase, alpha/beta fold family domain containing protein, expressed FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08850 nodulin, putative, expressed FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08879 nucleotide-sensitive chloride conductance regulator containing protein, expressed FN2739-S Chr10 4621001 4823000 0 0 Deletion 201999 LOC_Os10g08910 retrotransposon protein, putative, unclassified, expressed FN2739-S Chr10 7659040 A-G 0 0 Single Base Substitution 0 HET FN2739-S Chr10 8012848 G-T 0 0 Single Base Substitution 0 HET FN2739-S Chr11 15806560 Chr8 26093132 0 Translocation 0 FN2739-S Chr11 15806562 Chr8 26093368 0 Translocation 0 FN2739-S Chr11 16664026 T-A 0 0 Single Base Substitution 0 HET FN2739-S Chr11 17595875 17645563 0 0 Inversion 0 FN2739-S Chr11 17595881 17645573 0 0 Inversion 0 FN2739-S Chr11 18698192 18796151 0 0 Inversion 0 LOC_Os11g31820 expressed protein FN2739-S Chr11 18698193 18749708 0 0 Inversion 0 LOC_Os11g31820 expressed protein FN2739-S Chr11 19537166 19537531 0 0 Inversion 0 FN2739-S Chr11 21256157 21256158 0 0 Deletion 1 Homo FN2739-S Chr12 16959287 Chr8 6751598 0 Translocation 0 FN2739-S Chr12 21541414 Chr11 1259269 0 Translocation 0 FN2739-S Chr12 8865103 T-C 0 0 Single Base Substitution 0 HET FN2739-S Chr2 2781100 C-A 0 0 Single Base Substitution 0 HET FN2739-S Chr2 30113694 T-A 0 0 Single Base Substitution 0 HET FN2739-S Chr2 30853872 G-A 0 0 Single Base Substitution 0 Homo FN2739-S Chr2 32757077 G-T 0 0 Single Base Substitution 0 START_LOST HET LOC_Os02g53540 retrotransposon protein, putative, unclassified, expressed FN2739-S Chr3 10496340 G-A 0 0 Single Base Substitution 0 Homo FN2739-S Chr3 13677802 A-G 0 0 Single Base Substitution 0 HET FN2739-S Chr3 13710449 13710452 0 0 Deletion 3 HET FN2739-S Chr3 20337852 G-C 0 0 Single Base Substitution 0 HET FN2739-S Chr3 23869812 A-G 0 0 Single Base Substitution 0 Homo FN2739-S Chr3 30461467 C-T 0 0 Single Base Substitution 0 HET FN2739-S Chr3 31951909 31951910 0 0 Deletion 1 HET FN2739-S Chr3 32851337 C-T 0 0 Single Base Substitution 0 HET FN2739-S Chr4 10943418 Chr3 1961150 0 Translocation 0 FN2739-S Chr4 2356291 2356292 0 0 Insertion 1 HET FN2739-S Chr4 4336587 4336589 0 0 Insertion 2 HET FN2739-S Chr4 7132589 G-A 0 0 Single Base Substitution 0 Homo FN2739-S Chr5 12892319 T-C 0 0 Single Base Substitution 0 HET FN2739-S Chr5 14505877 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g25060 PPR repeat domain containing protein, putative, expressed FN2739-S Chr5 15305393 G-A 0 0 Single Base Substitution 0 HET FN2739-S Chr5 16948751 A-G 0 0 Single Base Substitution 0 HET FN2739-S Chr5 19085821 G-A 0 0 Single Base Substitution 0 HET FN2739-S Chr5 21428703 G-C 0 0 Single Base Substitution 0 HET FN2739-S Chr5 25315001 25353000 0 0 Deletion 37999 LOC_Os05g43540 transmembrane protein 56, putative, expressed FN2739-S Chr5 25315001 25353000 0 0 Deletion 37999 LOC_Os05g43550 Eukaryotic aspartyl protease domain containing protein, expressed FN2739-S Chr5 25315001 25353000 0 0 Deletion 37999 LOC_Os05g43560 AGAP007115-PA, putative, expressed FN2739-S Chr5 25315001 25353000 0 0 Deletion 37999 LOC_Os05g43570 AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed FN2739-S Chr5 25315001 25353000 0 0 Deletion 37999 LOC_Os05g43576 radical SAM enzyme, putative, expressed FN2739-S Chr5 25315001 25353000 0 0 Deletion 37999 LOC_Os05g43582 tRNA methyltran, putative, expressed FN2739-S Chr5 25315001 25353000 0 0 Deletion 37999 LOC_Os05g43590 serpin domain containing protein, putative, expressed FN2739-S Chr5 25315001 25353000 0 0 Deletion 37999 LOC_Os05g43595 expressed protein FN2739-S Chr5 27945184 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g48760 protein of unknown function DUF1421 domain containing protein, expressed FN2739-S Chr5 3475208 3475318 0 0 Inversion 0 LOC_Os05g06690 HECT-domain domain containing protein, expressed FN2739-S Chr5 4316445 4316455 0 0 Deletion 10 Homo FN2739-S Chr6 12611143 C-T 0 0 Single Base Substitution 0 HET FN2739-S Chr6 12694392 Chr5 25335561 0 Translocation 0 LOC_Os05g43570 AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed FN2739-S Chr6 12694392 Chr5 25335561 0 Translocation 0 LOC_Os06g21950 inorganic phosphate transporter, putative, expressed FN2739-S Chr6 12694483 Chr5 14620872 0 Translocation 0 LOC_Os05g25220 expressed protein FN2739-S Chr6 12694483 Chr5 14620872 0 Translocation 0 LOC_Os06g21950 inorganic phosphate transporter, putative, expressed FN2739-S Chr6 22050073 G-A 0 0 Single Base Substitution 0 HET FN2739-S Chr6 22180151 A-C 0 0 Single Base Substitution 0 HET FN2739-S Chr6 23738007 G-A 0 0 Single Base Substitution 0 HET FN2739-S Chr6 23934879 Chr3 26596427 0 Translocation 0 FN2739-S Chr6 24827457 G-A 0 0 Single Base Substitution 0 HET FN2739-S Chr6 25246934 25246936 0 0 Insertion 2 HET FN2739-S Chr6 25471092 T-C 0 0 Single Base Substitution 0 HET FN2739-S Chr6 28031558 Chr5 4772455 0 Translocation 0 FN2739-S Chr6 28031584 Chr5 4767648 0 Translocation 0 FN2739-S Chr6 28304037 G-A 0 0 Single Base Substitution 0 Homo FN2739-S Chr6 28889392 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g47740 phytosulfokine receptor precursor, putative, expressed FN2739-S Chr6 30515041 G-T 0 0 Single Base Substitution 0 HET FN2739-S Chr6 7797539 G-C 0 0 Single Base Substitution 0 Homo FN2739-S Chr7 17565960 T-A 0 0 Single Base Substitution 0 HET FN2739-S Chr7 18207560 A-G 0 0 Single Base Substitution 0 HET FN2739-S Chr7 19048018 C-T 0 0 Single Base Substitution 0 HET FN2739-S Chr7 20944151 C-A 0 0 Single Base Substitution 0 HET FN2739-S Chr7 21966267 G-C 0 0 Single Base Substitution 0 HET FN2739-S Chr8 20719717 G-A 0 0 Single Base Substitution 0 HET FN2739-S Chr8 22745631 C-T 0 0 Single Base Substitution 0 HET FN2739-S Chr8 25830913 G-A 0 0 Single Base Substitution 0 SPLICE_SITE_DONOR HET LOC_Os08g40830 pumilio domain-containing protein PPD1, putative, expressed FN2739-S Chr8 25830914 T-A 0 0 Single Base Substitution 0 SPLICE_SITE_DONOR HET LOC_Os08g40830 pumilio domain-containing protein PPD1, putative, expressed FN2739-S Chr9 11669730 C-A 0 0 Single Base Substitution 0 HET FN2739-S Chr9 16562549 C-G 0 0 Single Base Substitution 0 HET FN2739-S Chr9 17464090 A-G 0 0 Single Base Substitution 0 HET