FN2742-S Chr1 12418615 C-T 0 0 Single Base Substitution 0 HET FN2742-S Chr1 12691369 T-C 0 0 Single Base Substitution 0 HET FN2742-S Chr1 16892124 16892125 0 0 Insertion 1 HET FN2742-S Chr1 17747619 T-C 0 0 Single Base Substitution 0 HET FN2742-S Chr1 3863237 C-G 0 0 Single Base Substitution 0 Homo FN2742-S Chr1 43153040 G-T 0 0 Single Base Substitution 0 HET FN2742-S Chr1 6854618 C-G 0 0 Single Base Substitution 0 HET FN2742-S Chr1 7326150 A-T 0 0 Single Base Substitution 0 HET FN2742-S Chr10 18616433 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os10g34884 RIPER7 - Ripening-related family protein precursor, expressed FN2742-S Chr10 19003396 T-G 0 0 Single Base Substitution 0 Homo FN2742-S Chr10 260200 G-C 0 0 Single Base Substitution 0 HET FN2742-S Chr10 4529057 4529079 0 0 Insertion 22 HET FN2742-S Chr10 4885379 C-A 0 0 Single Base Substitution 0 Homo FN2742-S Chr10 5129012 Chr3 13364863 0 Translocation 0 LOC_Os03g23110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2742-S Chr10 5129012 Chr3 13364863 0 Translocation 0 LOC_Os10g09500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2742-S Chr11 11719665 G-A 0 0 Single Base Substitution 0 HET FN2742-S Chr11 13511438 Chr3 10048458 0 Translocation 0 FN2742-S Chr11 16955672 16955682 0 0 Deletion 10 HET FN2742-S Chr11 18840625 A-G 0 0 Single Base Substitution 0 HET FN2742-S Chr11 20227323 20228175 0 0 Deletion 852 HET FN2742-S Chr11 22168661 Chr8 16178857 0 Translocation 0 LOC_Os08g26580 hypothetical protein FN2742-S Chr11 22168661 Chr8 16178857 0 Translocation 0 LOC_Os11g37540 protein phosphatase 2C, putative, expressed FN2742-S Chr11 23833091 Chr1 41115482 0 Translocation 0 FN2742-S Chr11 25330902 Chr1 18683346 0 Translocation 0 FN2742-S Chr11 25624131 G-T 0 0 Single Base Substitution 0 HET FN2742-S Chr11 3967718 C-T 0 0 Single Base Substitution 0 HET FN2742-S Chr11 604806 A-T 0 0 Single Base Substitution 0 HET FN2742-S Chr12 10104644 Chr4 2691997 0 Translocation 0 LOC_Os04g05380 retrotransposon protein, putative, unclassified FN2742-S Chr12 10104644 Chr4 2691997 0 Translocation 0 LOC_Os12g17640 retrotransposon protein, putative, unclassified, expressed FN2742-S Chr12 11832375 Chr3 15245854 0 Translocation 0 LOC_Os03g26704 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2742-S Chr12 11832375 Chr3 15245854 0 Translocation 0 LOC_Os12g20270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2742-S Chr12 18515002 Chr10 14497223 0 Translocation 0 LOC_Os12g30824 terpene synthase, putative, expressed FN2742-S Chr12 24966314 24966319 0 0 Deletion 5 frameshift_variant Homo LOC_Os12g40320 OsFBX459 - F-box domain containing protein, expressed FN2742-S Chr12 25588001 25596000 0 0 Deletion 7999 LOC_Os12g41270 cysteine-rich receptor-like protein kinase 20 precursor, putative, expressed FN2742-S Chr12 3132054 3132817 0 0 Inversion 0 FN2742-S Chr12 8140034 T-C 0 0 Single Base Substitution 0 HET FN2742-S Chr2 429782 T-C 0 0 Single Base Substitution 0 HET FN2742-S Chr2 7540116 G-A 0 0 Single Base Substitution 0 HET FN2742-S Chr3 23162199 C-T 0 0 Single Base Substitution 0 Homo FN2742-S Chr3 28825708 G-T 0 0 Single Base Substitution 0 HET FN2742-S Chr3 35098056 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g61910 retrotransposon protein, putative, unclassified, expressed FN2742-S Chr3 35439009 G-C 0 0 Single Base Substitution 0 HET FN2742-S Chr4 10953614 T-A 0 0 Single Base Substitution 0 HET FN2742-S Chr4 13910489 13911404 0 0 Inversion 0 FN2742-S Chr4 15307503 C-T 0 0 Single Base Substitution 0 HET FN2742-S Chr4 16774071 Chr1 31955385 0 Translocation 0 FN2742-S Chr4 19183823 Chr1 24632606 0 Translocation 0 FN2742-S Chr4 20762981 20763973 0 0 Inversion 0 FN2742-S Chr4 24206175 G-A 0 0 Single Base Substitution 0 HET FN2742-S Chr4 25266320 25266321 0 0 Deletion 1 HET FN2742-S Chr4 31313403 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g52630 leucine-rich repeat-containing protein kinase family protein, putative, expressed FN2742-S Chr4 4417008 A-T 0 0 Single Base Substitution 0 HET FN2742-S Chr4 4417009 A-T 0 0 Single Base Substitution 0 HET FN2742-S Chr4 5672338 Chr2 11399302 0 Translocation 0 LOC_Os04g10434 amidase family protein, putative, expressed FN2742-S Chr4 705151 Chr2 18649007 0 Translocation 0 FN2742-S Chr4 8844726 8844744 0 0 Deletion 18 Homo FN2742-S Chr4 9557001 9583000 0 0 Deletion 25999 LOC_Os04g17479 expressed protein FN2742-S Chr4 9557001 9583000 0 0 Deletion 25999 LOC_Os04g17490 expressed protein FN2742-S Chr4 9557001 9583000 0 0 Deletion 25999 LOC_Os04g17500 expressed protein FN2742-S Chr4 9557001 9583000 0 0 Deletion 25999 LOC_Os04g17510 retrotransposon protein, putative, unclassified, expressed FN2742-S Chr4 9587001 9598000 0 0 Deletion 10999 LOC_Os04g17530 retrotransposon, putative, centromere-specific FN2742-S Chr4 9587001 9598000 0 0 Deletion 10999 LOC_Os04g17540 retrotransposon protein, putative, Ty3-gypsy subclass FN2742-S Chr4 9587001 9598000 0 0 Deletion 10999 LOC_Os04g17550 hypothetical protein FN2742-S Chr5 11479466 11479469 0 0 Deletion 3 HET FN2742-S Chr5 14051770 G-A 0 0 Single Base Substitution 0 HET FN2742-S Chr5 14982817 Chr3 18989003 0 Translocation 0 LOC_Os03g33190 retrotransposon protein, putative, unclassified, expressed FN2742-S Chr5 14982817 Chr3 18989003 0 Translocation 0 LOC_Os05g25750 retrotransposon protein, putative, unclassified, expressed FN2742-S Chr5 25526477 T-G 0 0 Single Base Substitution 0 HET FN2742-S Chr5 4824539 Chr1 40950870 0 Translocation 0 FN2742-S Chr5 8992089 C-G 0 0 Single Base Substitution 0 HET FN2742-S Chr6 15437108 15437110 0 0 Insertion 2 HET FN2742-S Chr6 16138998 16139000 0 0 Insertion 2 HET FN2742-S Chr6 25428434 25428453 0 0 Deletion 19 HET FN2742-S Chr6 27666466 G-T 0 0 Single Base Substitution 0 Homo FN2742-S Chr7 14787363 G-C 0 0 Single Base Substitution 0 HET FN2742-S Chr7 162697 G-A 0 0 Single Base Substitution 0 HET FN2742-S Chr7 162698 A-T 0 0 Single Base Substitution 0 HET FN2742-S Chr7 162700 G-T 0 0 Single Base Substitution 0 HET FN2742-S Chr7 297001 386000 0 0 Deletion 88999 LOC_Os07g01460 expressed protein FN2742-S Chr7 297001 386000 0 0 Deletion 88999 LOC_Os07g01470 circumsporozoite protein precursor, putative, expressed FN2742-S Chr7 297001 386000 0 0 Deletion 88999 LOC_Os07g01480 oxygen evolving enhancer protein 3 domain containing protein, expressed FN2742-S Chr7 297001 386000 0 0 Deletion 88999 LOC_Os07g01490 kinesin motor domain containing protein, putative, expressed FN2742-S Chr7 297001 386000 0 0 Deletion 88999 LOC_Os07g01500 retrotransposon protein, putative, unclassified, expressed FN2742-S Chr7 297001 386000 0 0 Deletion 88999 LOC_Os07g01510 retrotransposon protein, putative, unclassified, expressed FN2742-S Chr7 297001 386000 0 0 Deletion 88999 LOC_Os07g01520 expressed protein FN2742-S Chr7 297001 386000 0 0 Deletion 88999 LOC_Os07g01530 expressed protein FN2742-S Chr7 297001 386000 0 0 Deletion 88999 LOC_Os07g01540 Ser/Thr protein phosphatase family protein, putative, expressed FN2742-S Chr7 297001 386000 0 0 Deletion 88999 LOC_Os07g01550 leucine rich repeat domain containing protein, putative, expressed FN2742-S Chr7 297001 386000 0 0 Deletion 88999 LOC_Os07g01560 transporter family protein, putative, expressed FN2742-S Chr7 297001 386000 0 0 Deletion 88999 LOC_Os07g01570 expressed protein FN2742-S Chr7 297001 386000 0 0 Deletion 88999 LOC_Os07g01580 expressed protein FN2742-S Chr7 297001 386000 0 0 Deletion 88999 LOC_Os07g01590 hypothetical protein FN2742-S Chr7 297001 386000 0 0 Deletion 88999 LOC_Os07g01600 dirigent, putative, expressed FN2742-S Chr7 297001 386000 0 0 Deletion 88999 LOC_Os07g01610 retrotransposon protein, putative, unclassified, expressed FN2742-S Chr7 297001 386000 0 0 Deletion 88999 LOC_Os07g01620 dirigent, putative, expressed FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01650 transposon protein, putative, unclassified, expressed FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01660 dirigent, putative, expressed FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01670 expressed protein FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01680 dirigent, putative, expressed FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01690 expressed protein FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01700 DEFL2 - Defensin and Defensin-like DEFL family, expressed FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01710 phytosulfokine receptor precursor, putative, expressed FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01720 expressed protein FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01730 WD-40 repeat family protein, putative, expressed FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01740 cysteine protease, putative, expressed FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01750 MATE efflux family protein, putative, expressed FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01760 aminotransferase, classes I and II, domain containing protein, expressed FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01770 expressed protein FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01780 GTPase activating protein, putative, expressed FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01790 expressed protein FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01800 cysteine proteinase EP-B 1 precursor, putative, expressed FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01810 potassium channel protein, putative, expressed FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01820 OsMADS15 - MADS-box family gene with MIKCc type-box, expressed FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01830 hypothetical protein FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01840 expressed protein FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01850 NLI interacting factor-like phosphatase, putative, expressed FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01860 expressed protein FN2742-S Chr7 394001 526000 0 0 Deletion 131999 LOC_Os07g01870 ribosomal protein L13, putative, expressed FN2742-S Chr7 4997465 G-A 0 0 Single Base Substitution 0 HET FN2742-S Chr7 5495329 C-A 0 0 Single Base Substitution 0 HET FN2742-S Chr7 8261483 Chr3 18185027 0 Translocation 0 FN2742-S Chr8 17963032 17963033 0 0 Insertion 1 HET FN2742-S Chr8 19326360 T-A 0 0 Single Base Substitution 0 HET FN2742-S Chr8 19530126 19530129 0 0 Deletion 3 HET FN2742-S Chr8 20786376 20786386 0 0 Deletion 10 HET FN2742-S Chr8 26143643 Chr6 18086542 0 Translocation 0 LOC_Os06g31100 E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed FN2742-S Chr8 26143643 Chr6 18086542 0 Translocation 0 LOC_Os08g41390 peptidyl-prolyl isomerase, putative, expressed FN2742-S Chr8 26144941 Chr6 18086540 0 Translocation 0 LOC_Os06g31100 E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed FN2742-S Chr8 26144941 Chr6 18086540 0 Translocation 0 LOC_Os08g41400 expressed protein FN2742-S Chr8 26980866 26980873 0 0 Deletion 7 HET FN2742-S Chr8 27096432 C-T 0 0 Single Base Substitution 0 HET FN2742-S Chr8 28275837 Chr7 526193 0 Translocation 0 FN2742-S Chr8 28275837 Chr7 526193 0 Translocation 0 LOC_Os07g01880 VIP4, putative, expressed FN2742-S Chr8 28288248 Chr7 525865 0 Translocation 0 LOC_Os08g45050 expressed protein FN2742-S Chr8 3216256 G-A 0 0 Single Base Substitution 0 HET FN2742-S Chr9 10297010 10297019 0 0 Deletion 9 inframe_deletion Homo LOC_Os09g16860 retrotransposon protein, putative, unclassified, expressed FN2742-S Chr9 14795702 Chr7 5461185 0 Translocation 0 FN2742-S Chr9 14882001 14892000 0 0 Deletion 9999 LOC_Os09g24924 transporter family protein, putative, expressed FN2742-S Chr9 15453427 A-G 0 0 Single Base Substitution 0 HET FN2742-S Chr9 241557 251180 0 0 Inversion 0 FN2742-S Chr9 4817289 4817293 0 0 Deletion 4 HET FN2742-S Chr9 9727218 Chr3 19443641 0 Translocation 0 FN2742-S Chr9 9735843 G-A 0 0 Single Base Substitution 0 Homo