FN2752-S Chr1 11085472 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr1 16534207 16534208 0 0 Deletion 1 INTERGENIC HET FN2752-S Chr1 17941212 17941222 0 0 Deletion 10 Homo FN2752-S Chr1 18915877 18915879 0 0 Deletion 2 upstream_gene_variant HET FN2752-S Chr1 21772474 21772474 0 0 Insertion 3 INTERGENIC HET FN2752-S Chr1 25962861 26492157 0 0 Inversion 0 FN2752-S Chr1 25962864 26492159 0 0 Inversion 0 FN2752-S Chr1 26192332 26192333 0 0 Deletion 1 Homo FN2752-S Chr1 31498875 31498878 0 0 Deletion 3 INTERGENIC HET FN2752-S Chr1 33853177 33853178 0 0 Deletion 1 upstream_gene_variant HET FN2752-S Chr1 38329087 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr1 5734781 T-C 0 0 Single Base Substitution 0 HET FN2752-S Chr10 13322043 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g25720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2752-S Chr10 14198418 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g26960 retrotransposon protein, putative, unclassified FN2752-S Chr10 16923342 G-A 0 0 Single Base Substitution 0 Homo FN2752-S Chr10 16936883 C-A 0 0 Single Base Substitution 0 HET FN2752-S Chr10 17232345 Chr1 7861565 0 Translocation 0 FN2752-S Chr10 19310054 C-T 0 0 Single Base Substitution 0 Homo FN2752-S Chr10 268031 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr10 749754 749755 0 0 Insertion 1 frameshift_variant HET LOC_Os10g02180 retrotransposon protein, putative, unclassified FN2752-S Chr10 8924128 T-C 0 0 Single Base Substitution 0 HET FN2752-S Chr11 12942262 Chr4 779243 0 Translocation 0 LOC_Os04g02250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2752-S Chr11 12942262 Chr4 779243 0 Translocation 0 LOC_Os11g22530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2752-S Chr11 13595362 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr11 13595363 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr11 14463859 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr11 16839493 G-A 0 0 Single Base Substitution 0 Homo FN2752-S Chr11 19312246 C-G 0 0 Single Base Substitution 0 HET FN2752-S Chr11 20621523 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr11 21862430 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g37040 expressed protein FN2752-S Chr11 2223307 2223408 0 0 Inversion 101 FN2752-S Chr11 2416414 2416419 0 0 Deletion 5 Homo FN2752-S Chr11 26072450 26072450 0 0 Insertion 10 upstream_gene_variant HET FN2752-S Chr11 26072450 26072450 0 0 Insertion 2 upstream_gene_variant HET FN2752-S Chr11 2785627 Chr3 16685673 0 Translocation 0 FN2752-S Chr11 4272848 Chr9 3387619 0 Translocation 0 LOC_Os09g06990 retrotransposon protein, putative, Ty3-gypsy subclass FN2752-S Chr11 4450055 G-A 0 0 Single Base Substitution 0 INTRON HET FN2752-S Chr11 5596160 5596161 0 0 Deletion 1 Homo FN2752-S Chr11 8964784 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr12 11557621 11557638 0 0 Deletion 17 INTRON HOMO FN2752-S Chr12 11613192 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g19930 retrotransposon protein, putative, Ty3-gypsy subclass FN2752-S Chr12 11794917 Chr1 14847551 0 Translocation 0 LOC_Os12g20220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2752-S Chr12 12126480 T-A 0 0 Single Base Substitution 0 HET FN2752-S Chr12 15540968 15540969 0 0 Deletion 1 HET FN2752-S Chr12 19188001 19234000 0 0 Deletion 45999 LOC_Os12g31880 translation initiation factor, putative, expressed FN2752-S Chr12 19188001 19234000 0 0 Deletion 45999 LOC_Os12g31890 ureide permease, putative, expressed FN2752-S Chr12 19188001 19234000 0 0 Deletion 45999 LOC_Os12g31900 retrotransposon protein, putative, unclassified FN2752-S Chr12 19188001 19234000 0 0 Deletion 45999 LOC_Os12g31910 expressed protein FN2752-S Chr12 19188001 19234000 0 0 Deletion 45999 LOC_Os12g31920 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2752-S Chr12 19188001 19234000 0 0 Deletion 45999 LOC_Os12g31930 transposon protein, putative, unclassified FN2752-S Chr12 19238001 19287000 0 0 Deletion 48999 LOC_Os12g31940 transposon protein, putative, unclassified, expressed FN2752-S Chr12 19238001 19287000 0 0 Deletion 48999 LOC_Os12g31960 retrotransposon protein, putative, LINE subclass, expressed FN2752-S Chr12 19238001 19287000 0 0 Deletion 48999 LOC_Os12g31980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2752-S Chr12 19238001 19287000 0 0 Deletion 48999 LOC_Os12g31990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2752-S Chr12 19238001 19287000 0 0 Deletion 48999 LOC_Os12g32000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2752-S Chr12 20325124 A-T 0 0 Single Base Substitution 0 HET FN2752-S Chr12 21997879 21997881 0 0 Insertion 2 HET FN2752-S Chr12 2507640 A-G 0 0 Single Base Substitution 0 HET FN2752-S Chr12 25807949 G-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2752-S Chr12 2684496 C-T 0 0 Single Base Substitution 0 HET FN2752-S Chr12 3358586 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g06900 citrate-binding protein precursor, putative, expressed FN2752-S Chr12 4055986 4055992 0 0 Deletion 6 INTERGENIC HOMO FN2752-S Chr12 9791407 G-A 0 0 Single Base Substitution 0 HET FN2752-S Chr2 14327914 14327915 0 0 Deletion 1 downstream_gene_variant HET FN2752-S Chr2 14556979 G-C 0 0 Single Base Substitution 0 HET FN2752-S Chr2 19685614 19685617 0 0 Deletion 3 INTRON HET FN2752-S Chr2 20017290 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2752-S Chr2 22009569 22009569 0 0 Insertion 16 upstream_gene_variant HET FN2752-S Chr2 22254500 C-G 0 0 Single Base Substitution 0 HET FN2752-S Chr2 22902795 22902796 0 0 Deletion 1 downstream_gene_variant HET FN2752-S Chr2 27133113 Chr1 25821321 0 Translocation 0 FN2752-S Chr2 34463476 34463483 0 0 Deletion 7 FRAME_SHIFT HOMO LOC_Os02g56300 aminotransferase, classes I and II, domain containing protein, expressed FN2752-S Chr2 35011523 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN2752-S Chr2 7509736 7509761 0 0 Deletion 25 FRAME_SHIFT HOMO LOC_Os02g13850 leucine-rich repeat-containing protein kinase family protein, putative, expressed FN2752-S Chr2 813864 813865 0 0 Deletion 1 intergenic_region HET FN2752-S Chr3 11066394 Chr2 29255718 0 Translocation 0 FN2752-S Chr3 13380250 13380251 0 0 Insertion 1 HET FN2752-S Chr3 13539829 Chr2 30014446 0 Translocation 0 LOC_Os03g23860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2752-S Chr3 14831618 14831618 0 0 Insertion 6 upstream_gene_variant HET FN2752-S Chr3 14987577 14987578 0 0 Insertion 1 HET FN2752-S Chr3 15157907 G-C 0 0 Single Base Substitution 0 Homo FN2752-S Chr3 18032367 18073228 0 0 Inversion 40861 LOC_Os03g31650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2752-S Chr3 21198057 T-A 0 0 Single Base Substitution 0 HET FN2752-S Chr3 22836943 G-A 0 0 Single Base Substitution 0 HET FN2752-S Chr3 23123639 G-A 0 0 Single Base Substitution 0 Homo FN2752-S Chr3 24991745 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr3 26074698 A-C 0 0 Single Base Substitution 0 INTRON HOMO FN2752-S Chr3 2779069 A-C 0 0 Single Base Substitution 0 Homo FN2752-S Chr3 35708142 35708146 0 0 Deletion 4 INTERGENIC HOMO FN2752-S Chr3 35816617 A-C 0 0 Single Base Substitution 0 HET FN2752-S Chr3 4658856 A-C 0 0 Single Base Substitution 0 Homo FN2752-S Chr3 4835539 Chr2 31043205 0 Translocation 0 FN2752-S Chr3 4835539 Chr2 31057052 0 Translocation 0 FN2752-S Chr3 7067518 T-C 0 0 Single Base Substitution 0 HET FN2752-S Chr3 7533718 C-A 0 0 Single Base Substitution 0 HET FN2752-S Chr3 758046 T-A 0 0 Single Base Substitution 0 Homo FN2752-S Chr3 9693514 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2752-S Chr4 10543478 10543479 0 0 Deletion 1 frameshift_variant Homo LOC_Os04g18980 retrotransposon protein, putative, unclassified, expressed FN2752-S Chr4 10549755 C-T 0 0 Single Base Substitution 0 Homo FN2752-S Chr4 10571919 G-A 0 0 Single Base Substitution 0 HET FN2752-S Chr4 11850838 C-T 0 0 Single Base Substitution 0 HET FN2752-S Chr4 11939996 11939998 0 0 Deletion 2 INTERGENIC HET FN2752-S Chr4 12169992 12170048 0 0 Deletion 56 HET FN2752-S Chr4 13282736 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr4 14328301 A-G 0 0 Single Base Substitution 0 HET FN2752-S Chr4 14555339 C-T 0 0 Single Base Substitution 0 Homo FN2752-S Chr4 14967133 14967137 0 0 Deletion 4 Homo FN2752-S Chr4 16073910 16073956 0 0 Deletion 46 upstream_gene_variant HET FN2752-S Chr4 22740769 22740770 0 0 Deletion 1 upstream_gene_variant HET FN2752-S Chr4 30479024 30479027 0 0 Deletion 3 INTERGENIC HOMO FN2752-S Chr4 34110384 G-T 0 0 Single Base Substitution 0 Homo FN2752-S Chr4 3439632 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr4 4394064 A-G 0 0 Single Base Substitution 0 Homo FN2752-S Chr4 4616765 4616766 0 0 Deletion 1 upstream_gene_variant HET FN2752-S Chr4 5588399 Chr1 25576624 0 Translocation 0 FN2752-S Chr4 7116361 7116363 0 0 Deletion 2 downstream_gene_variant HET FN2752-S Chr4 7546470 7546471 0 0 Insertion 1 frameshift_variant HET LOC_Os04g13530 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed FN2752-S Chr4 8402055 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g14940 retrotransposon protein, putative, unclassified, expressed FN2752-S Chr4 9411765 G-A 0 0 Single Base Substitution 0 Homo FN2752-S Chr5 17883172 Chr3 31648212 0 Translocation 0 FN2752-S Chr5 19981449 A-G 0 0 Single Base Substitution 0 HET FN2752-S Chr5 2183428 C-T 0 0 Single Base Substitution 0 HET FN2752-S Chr5 24686172 T-A 0 0 Single Base Substitution 0 HET FN2752-S Chr5 24878722 C-A 0 0 Single Base Substitution 0 HET FN2752-S Chr5 25335409 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g43570 AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed FN2752-S Chr5 29103569 29103569 0 0 Insertion 2 INTERGENIC HET FN2752-S Chr5 3190947 3969039 0 0 Inversion 778092 FN2752-S Chr5 3190954 3969053 0 0 Inversion 778099 FN2752-S Chr5 524062 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr6 10869131 10869139 0 0 Deletion 8 FRAME_SHIFT HET LOC_Os06g19100 retrotransposon protein, putative, unclassified, expressed FN2752-S Chr6 13228457 13228483 0 0 Deletion 26 frameshift_variant HET LOC_Os06g22740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2752-S Chr6 16543925 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr6 16586458 G-A 0 0 Single Base Substitution 0 HET FN2752-S Chr6 1732923 1732924 0 0 Deletion 1 Homo FN2752-S Chr6 1854729 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr6 20182219 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr6 22165436 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2752-S Chr6 22178018 22178020 0 0 Deletion 2 Homo FN2752-S Chr6 22281600 G-A 0 0 Single Base Substitution 0 HET FN2752-S Chr6 3089458 3089472 0 0 Deletion 14 INTERGENIC HOMO FN2752-S Chr6 31238421 C-T 0 0 Single Base Substitution 0 Homo FN2752-S Chr7 10071021 10071030 0 0 Deletion 9 inframe_deletion HET LOC_Os07g17140 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2752-S Chr7 11741318 C-T 0 0 Single Base Substitution 0 HET FN2752-S Chr7 11741319 C-T 0 0 Single Base Substitution 0 HET FN2752-S Chr7 12938685 12938687 0 0 Deletion 2 frameshift_variant HET LOC_Os07g22960 retrotransposon protein, putative, unclassified, expressed FN2752-S Chr7 17845212 T-C 0 0 Single Base Substitution 0 HET FN2752-S Chr7 21742057 G-A 0 0 Single Base Substitution 0 INTRON HET FN2752-S Chr7 22686675 22686743 0 0 Deletion 68 HET FN2752-S Chr7 229034 229038 0 0 Deletion 4 downstream_gene_variant HET FN2752-S Chr7 23972237 T-A 0 0 Single Base Substitution 0 Homo FN2752-S Chr7 3713278 3713279 0 0 Deletion 1 INTERGENIC HET FN2752-S Chr7 485240 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr7 6082689 6082781 0 0 Deletion 92 upstream_gene_variant HET FN2752-S Chr7 9612033 9612049 0 0 Deletion 16 INTERGENIC HOMO FN2752-S Chr8 12324413 C-T 0 0 Single Base Substitution 0 Homo FN2752-S Chr8 14123077 A-C 0 0 Single Base Substitution 0 HET FN2752-S Chr8 21195051 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2752-S Chr8 21195053 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2752-S Chr8 21257219 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g33950 retrotransposon protein, putative, unclassified, expressed FN2752-S Chr8 21855186 22366710 0 0 Inversion 0 LOC_Os08g34760 expressed protein FN2752-S Chr8 21855200 22366711 0 0 Inversion 0 LOC_Os08g34760 expressed protein FN2752-S Chr8 24138434 24138581 0 0 Inversion 0 FN2752-S Chr8 25452213 C-T 0 0 Single Base Substitution 0 HET FN2752-S Chr8 4288197 G-A 0 0 Single Base Substitution 0 Homo FN2752-S Chr8 4419035 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr8 4419036 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2752-S Chr8 6760515 6760516 0 0 Deletion 1 HET FN2752-S Chr8 8918680 8918680 0 0 Insertion 6 splice_region_variant&intron_variant HET FN2752-S Chr9 12626465 12626467 0 0 Deletion 2 INTERGENIC HET FN2752-S Chr9 13663140 13663140 0 0 Insertion 20 upstream_gene_variant HET FN2752-S Chr9 13755872 T-G 0 0 Single Base Substitution 0 HET FN2752-S Chr9 14670798 14670799 0 0 Deletion 1 INTERGENIC HOMO FN2752-S Chr9 16882224 Chr2 34742587 0 Translocation 0 FN2752-S Chr9 16882224 Chr2 34742587 0 Translocation 0 LOC_Os02g56680 dehydrogenase, putative, expressed FN2752-S Chr9 18970946 18970946 0 0 Insertion 16 upstream_gene_variant HET FN2752-S Chr9 21254558 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g36860 acyl carrier protein, putative, expressed FN2752-S Chr9 21254559 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2752-S Chr9 4040357 Chr6 8105987 0 Translocation 0