FN2753-S-1 Chr1 19869737 C-T 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN2753-S-1 Chr1 32411948 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g56270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2753-S-1 Chr1 37383247 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S-1 Chr1 39835952 39835955 0 0 Deletion 3 INTERGENIC HOMO FN2753-S-1 Chr1 42653212 42653218 0 0 Deletion 6 INTRON HOMO FN2753-S-1 Chr1 42924480 42924480 0 0 Insertion 12 intergenic_region HET FN2753-S-1 Chr10 19335143 19335143 0 0 Insertion 8 3_prime_UTR_variant HET FN2753-S-1 Chr10 3803882 3803882 0 0 Insertion 6 5_prime_UTR_variant HET FN2753-S-1 Chr10 5218310 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S-1 Chr10 6468134 T-A 0 0 Single Base Substitution 0 INTRON HET FN2753-S-1 Chr11 14702422 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S-1 Chr11 3124308 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S-1 Chr11 7844946 7844950 0 0 Deletion 4 INTRON HET FN2753-S-1 Chr12 10806750 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S-1 Chr12 13719698 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g24110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2753-S-1 Chr12 1524590 1524596 0 0 Deletion 6 CODON_DELETION HOMO LOC_Os12g03750 Leucine Rich Repeat family protein, expressed FN2753-S-1 Chr12 20910937 20910938 0 0 Deletion 1 INTERGENIC HOMO FN2753-S-1 Chr12 20945927 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S-1 Chr12 23568278 23568285 0 0 Deletion 7 INTERGENIC HET FN2753-S-1 Chr12 27205500 27205505 0 0 Deletion 5 UTR_3_PRIME HOMO FN2753-S-1 Chr12 5440859 Chr9 10360803 0 Translocation 0 FN2753-S-1 Chr12 8797140 8797142 0 0 Deletion 2 3_prime_UTR_variant HET FN2753-S-1 Chr12 9883563 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2753-S-1 Chr2 13981702 G-C 0 0 Single Base Substitution 0 INTRON HET FN2753-S-1 Chr2 21978201 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2753-S-1 Chr2 22166422 C-T 0 0 Single Base Substitution 0 INTRON HET FN2753-S-1 Chr2 23897680 23897680 0 0 Insertion 12 upstream_gene_variant HET FN2753-S-1 Chr2 28020379 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2753-S-1 Chr2 28619547 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S-1 Chr2 34059622 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S-1 Chr2 6900186 6900187 0 0 Deletion 1 upstream_gene_variant HET FN2753-S-1 Chr2 9833388 9833388 0 0 Insertion 54 upstream_gene_variant HET FN2753-S-1 Chr3 11016643 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S-1 Chr3 11687382 11687382 0 0 Insertion 34 upstream_gene_variant HET FN2753-S-1 Chr3 19627439 19627458 0 0 Deletion 19 upstream_gene_variant HET FN2753-S-1 Chr3 19807278 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S-1 Chr3 30058467 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S-1 Chr3 31281611 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S-1 Chr3 31822800 31822801 0 0 Deletion 1 INTERGENIC HET FN2753-S-1 Chr3 34375481 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S-1 Chr3 34742196 34742196 0 0 Insertion 2 INTERGENIC HET FN2753-S-1 Chr3 34850513 34850513 0 0 Insertion 23 upstream_gene_variant HET FN2753-S-1 Chr3 8978766 8978775 0 0 Deletion 9 upstream_gene_variant HET FN2753-S-1 Chr4 10419810 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2753-S-1 Chr4 13261573 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2753-S-1 Chr4 14794999 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S-1 Chr4 18351090 18351090 0 0 Insertion 32 upstream_gene_variant HET FN2753-S-1 Chr4 18883696 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S-1 Chr4 18883697 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S-1 Chr4 19214358 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S-1 Chr4 21204477 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S-1 Chr4 22303876 22303878 0 0 Deletion 2 INTERGENIC HOMO FN2753-S-1 Chr4 5284154 5284154 0 0 Insertion 1 frameshift_variant HET LOC_Os04g09840 retrotransposon protein, putative, unclassified, expressed FN2753-S-1 Chr4 9449393 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S-1 Chr4 9713475 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S-1 Chr5 12140692 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g20710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2753-S-1 Chr5 13463307 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S-1 Chr5 13803903 13803918 0 0 Deletion 15 INTRON HOMO FN2753-S-1 Chr5 13966379 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S-1 Chr5 15461704 15461724 0 0 Deletion 20 upstream_gene_variant HET FN2753-S-1 Chr5 15848560 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S-1 Chr5 17575533 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g30310 transposon protein, putative, unclassified, expressed FN2753-S-1 Chr5 26333603 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S-1 Chr5 6736152 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S-1 Chr6 11485476 11485487 0 0 Deletion 11 UTR_3_PRIME HOMO FN2753-S-1 Chr6 13295840 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S-1 Chr6 19660768 19660770 0 0 Deletion 2 INTERGENIC HET FN2753-S-1 Chr6 21336980 Chr4 20208694 0 Translocation 0 FN2753-S-1 Chr6 29084919 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S-1 Chr6 29479680 T-C 0 0 Single Base Substitution 0 INTRON HET FN2753-S-1 Chr6 29666964 G-A 0 0 Single Base Substitution 0 INTRON HET FN2753-S-1 Chr6 3336626 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S-1 Chr6 7240174 7240179 0 0 Deletion 5 INTERGENIC HOMO FN2753-S-1 Chr7 14862611 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2753-S-1 Chr7 17135547 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S-1 Chr7 24240108 24240108 0 0 Insertion 79 upstream_gene_variant HET FN2753-S-1 Chr8 1126869 1126870 0 0 Deletion 1 INTERGENIC HET FN2753-S-1 Chr8 11350651 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S-1 Chr8 12890399 Chr5 26582797 0 Translocation 0 FN2753-S-1 Chr8 12890406 Chr1 20080061 0 Translocation 0 FN2753-S-1 Chr8 13660220 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S-1 Chr8 13690957 13690958 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os08g22780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2753-S-1 Chr8 2920476 A-T 0 0 Single Base Substitution 0 INTRON HET FN2753-S-1 Chr8 3384582 A-G 0 0 Single Base Substitution 0 INTRON HET FN2753-S-1 Chr8 3556776 3556777 0 0 Deletion 1 intergenic_region HET FN2753-S-1 Chr8 5393714 5393714 0 0 Insertion 31 upstream_gene_variant HET FN2753-S-1 Chr8 6483063 6483063 0 0 Insertion 1 upstream_gene_variant HET FN2753-S-1 Chr8 7049914 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2753-S-1 Chr8 7726574 Chr1 31258109 0 Translocation 0 FN2753-S-1 Chr9 16227092 A-G 0 0 Single Base Substitution 0 INTRON HET FN2753-S-1 Chr9 19412409 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2753-S-1 Chr9 22456585 22456597 0 0 Deletion 12 upstream_gene_variant HET FN2753-S-1 Chr9 7263466 Chr6 24467961 0 Translocation 0 FN2753-S-1 Chr9 9012709 G-A 0 0 Single Base Substitution 0 INTERGENIC HET