FN2755-S Chr1 10767259 10767269 0 0 Deletion 10 INTERGENIC HET FN2755-S Chr1 12680300 12680306 0 0 Deletion 6 HET FN2755-S Chr1 20162089 20162104 0 0 Deletion 15 intron_variant HET FN2755-S Chr1 21816863 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN2755-S Chr1 22482043 22482051 0 0 Deletion 8 INTERGENIC HOMO FN2755-S Chr1 29569677 29569687 0 0 Deletion 10 HET FN2755-S Chr1 30443824 30443825 0 0 Deletion 1 frameshift_variant HET LOC_Os01g52950 retrotransposon protein, putative, unclassified, expressed FN2755-S Chr1 31167182 31167188 0 0 Deletion 6 UTR_3_PRIME HOMO FN2755-S Chr1 34942764 34942767 0 0 Deletion 3 upstream_gene_variant HET FN2755-S Chr1 36629159 36629160 0 0 Deletion 1 downstream_gene_variant HET FN2755-S Chr1 37507648 G-C 0 0 Single Base Substitution 0 HET FN2755-S Chr1 37507649 C-A 0 0 Single Base Substitution 0 HET FN2755-S Chr1 37817119 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2755-S Chr1 4072974 4072980 0 0 Deletion 6 HET FN2755-S Chr1 43089237 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g74390 transposon protein, putative, unclassified FN2755-S Chr1 43240515 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2755-S Chr1 4849324 4849324 0 0 Insertion 4 INTERGENIC HET FN2755-S Chr1 7292911 7292911 0 0 Insertion 1 upstream_gene_variant HET FN2755-S Chr1 9434029 T-C 0 0 Single Base Substitution 0 HET FN2755-S Chr1 9514665 9514667 0 0 Deletion 2 upstream_gene_variant HET FN2755-S Chr10 1220827 1220828 0 0 Deletion 1 frameshift_variant HET LOC_Os10g02960 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2755-S Chr10 18451785 Chr6 8105161 0 Translocation 0 LOC_Os10g34614 csAtPR5, putative, expressed FN2755-S Chr10 19019792 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g35560 expressed protein FN2755-S Chr10 19022677 C-G 0 0 Single Base Substitution 0 INTRON HET FN2755-S Chr10 21456586 21456591 0 0 Deletion 5 frameshift_variant Homo LOC_Os10g40060 protein kinase, putative, expressed FN2755-S Chr10 4405639 G-A 0 0 Single Base Substitution 0 HET FN2755-S Chr10 5264583 5264584 0 0 Insertion 1 HET FN2755-S Chr10 5305299 5305300 0 0 Deletion 1 frameshift_variant HET LOC_Os10g09810 retrotransposon protein, putative, unclassified, expressed FN2755-S Chr10 8728114 8728115 0 0 Deletion 1 upstream_gene_variant HET FN2755-S Chr11 10280648 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2755-S Chr11 14925126 14925127 0 0 Deletion 1 upstream_gene_variant HET FN2755-S Chr11 15070869 15070888 0 0 Deletion 19 upstream_gene_variant HET FN2755-S Chr11 15249059 Chr1 11769608 0 Translocation 0 FN2755-S Chr11 180941 180967 0 0 Deletion 26 INTERGENIC HOMO FN2755-S Chr11 18406151 18406152 0 0 Deletion 1 HET FN2755-S Chr11 18508356 Chr1 40950870 0 Translocation 0 FN2755-S Chr11 18825586 18828949 0 0 Inversion 0 FN2755-S Chr11 19361833 Chr2 7462906 0 Translocation 0 FN2755-S Chr11 19361845 Chr2 7462449 0 Translocation 0 FN2755-S Chr11 19762910 Chr8 17299594 0 Translocation 0 LOC_Os08g28350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2755-S Chr11 19762910 Chr8 17299594 0 Translocation 0 LOC_Os11g33394 plant protein of unknown function domain containing protein, expressed FN2755-S Chr11 21218407 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2755-S Chr11 22189730 22189731 0 0 Deletion 1 frameshift_variant HET LOC_Os11g37590 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2755-S Chr11 24445386 Chr4 29686988 0 Translocation 0 LOC_Os04g49790 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2755-S Chr11 24445386 Chr4 29686988 0 Translocation 0 LOC_Os11g40860 retrotransposon protein, putative, unclassified, expressed FN2755-S Chr11 24994391 Chr4 17873076 0 Translocation 0 FN2755-S Chr11 25389394 25389396 0 0 Deletion 2 Homo FN2755-S Chr11 25898149 Chr9 4534242 0 Translocation 0 FN2755-S Chr11 3129576 Chr6 18189937 0 Translocation 0 FN2755-S Chr11 3427229 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2755-S Chr11 4226652 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g08080 SWIRM domain containing protein, expressed FN2755-S Chr11 5168027 5168032 0 0 Deletion 5 upstream_gene_variant HET FN2755-S Chr11 8233027 8233075 0 0 Deletion 48 disruptive_inframe_deletion HET LOC_Os11g14610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2755-S Chr12 10782173 Chr3 13483603 0 Translocation 0 FN2755-S Chr12 11725122 11725136 0 0 Deletion 14 HET FN2755-S Chr12 12183087 Chr2 9649794 0 Translocation 0 FN2755-S Chr12 13267692 C-T 0 0 Single Base Substitution 0 HET FN2755-S Chr12 14987782 G-A 0 0 Single Base Substitution 0 HET FN2755-S Chr12 16674017 16674018 0 0 Deletion 1 upstream_gene_variant HET FN2755-S Chr12 17479698 17479748 0 0 Deletion 50 exon_loss_variant&splice_region_variant HET LOC_Os12g29430 OsWAK125 - OsWAK receptor-like protein OsWAK-RLP, expressed FN2755-S Chr12 22100654 G-A 0 0 Single Base Substitution 0 HET FN2755-S Chr12 22833330 22833330 0 0 Insertion 2 INTERGENIC HET FN2755-S Chr12 22891456 22891457 0 0 Deletion 1 upstream_gene_variant HET FN2755-S Chr12 24232295 T-A 0 0 Single Base Substitution 0 HET FN2755-S Chr12 25686369 25686369 0 0 Insertion 1 downstream_gene_variant HET FN2755-S Chr12 4997260 4997260 0 0 Insertion 14 upstream_gene_variant HET FN2755-S Chr12 6994745 6994746 0 0 Insertion 1 HET FN2755-S Chr12 7165584 Chr1 30931778 0 Translocation 0 FN2755-S Chr12 8068786 8068788 0 0 Deletion 2 HET FN2755-S Chr12 8312897 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2755-S Chr12 9600340 9600341 0 0 Deletion 1 frameshift_variant HET LOC_Os12g16750 retrotransposon protein, putative, unclassified, expressed FN2755-S Chr12 9847784 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2755-S Chr2 13432238 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g22510 retrotransposon protein, putative, Ty3-gypsy subclass FN2755-S Chr2 15002416 C-T 0 0 Single Base Substitution 0 HET FN2755-S Chr2 17801513 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g29950 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2755-S Chr2 2071734 Chr1 1499653 0 Translocation 0 FN2755-S Chr2 20841243 A-C 0 0 Single Base Substitution 0 Homo FN2755-S Chr2 22470466 22470474 0 0 Deletion 8 Homo FN2755-S Chr2 2634256 G-A 0 0 Single Base Substitution 0 Homo FN2755-S Chr2 30911870 30911871 0 0 Deletion 1 downstream_gene_variant HET FN2755-S Chr2 31025719 T-C 0 0 Single Base Substitution 0 HET FN2755-S Chr2 32768240 32768240 0 0 Insertion 1 upstream_gene_variant HET FN2755-S Chr2 33538703 T-C 0 0 Single Base Substitution 0 HET FN2755-S Chr2 34470348 C-T 0 0 Single Base Substitution 0 HET FN2755-S Chr2 35342528 T-C 0 0 Single Base Substitution 0 INTRON HET FN2755-S Chr2 4406562 4406563 0 0 Deletion 1 upstream_gene_variant HET FN2755-S Chr2 4687717 A-T 0 0 Single Base Substitution 0 INTRON HET FN2755-S Chr2 4883156 4883157 0 0 Deletion 1 upstream_gene_variant HET FN2755-S Chr2 8657225 8657227 0 0 Insertion 2 HET FN2755-S Chr3 12421208 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2755-S Chr3 13559330 C-T 0 0 Single Base Substitution 0 Homo FN2755-S Chr3 16954453 C-T 0 0 Single Base Substitution 0 HET FN2755-S Chr3 18975401 18975402 0 0 Deletion 1 downstream_gene_variant HET FN2755-S Chr3 19229638 19229642 0 0 Deletion 4 upstream_gene_variant HET FN2755-S Chr3 21377557 C-T 0 0 Single Base Substitution 0 HET FN2755-S Chr3 22475639 22475639 0 0 Insertion 1 intron_variant HET FN2755-S Chr3 22544820 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2755-S Chr3 23504046 C-T 0 0 Single Base Substitution 0 Homo FN2755-S Chr3 25248173 25248174 0 0 Deletion 1 upstream_gene_variant HET FN2755-S Chr3 28987007 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2755-S Chr3 29419488 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2755-S Chr3 31582364 31582366 0 0 Insertion 2 HET FN2755-S Chr3 3746463 G-A 0 0 Single Base Substitution 0 HET FN2755-S Chr3 7809773 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g14349 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2755-S Chr4 10479946 10479946 0 0 Insertion 1 downstream_gene_variant HET FN2755-S Chr4 10802700 10820855 0 0 Inversion 18155 LOC_Os04g19420 retrotransposon protein, putative, unclassified, expressed FN2755-S Chr4 10802702 10820860 0 0 Inversion 18158 LOC_Os04g19420 retrotransposon protein, putative, unclassified, expressed FN2755-S Chr4 11041854 11041856 0 0 Deletion 2 Homo FN2755-S Chr4 15031765 Chr2 10522098 0 Translocation 0 FN2755-S Chr4 1733217 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2755-S Chr4 19764151 19764152 0 0 Deletion 1 upstream_gene_variant HET FN2755-S Chr4 20648675 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2755-S Chr4 2596474 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os04g05200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2755-S Chr4 33051752 C-T 0 0 Single Base Substitution 0 HET FN2755-S Chr4 34835738 C-T 0 0 Single Base Substitution 0 HET FN2755-S Chr4 35149459 C-A 0 0 Single Base Substitution 0 HET FN2755-S Chr4 6055173 6055173 0 0 Insertion 4 INTERGENIC HET FN2755-S Chr4 9780788 9838284 0 0 Inversion 57496 FN2755-S Chr5 11128475 11128476 0 0 Insertion 1 HET FN2755-S Chr5 11174840 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g19240 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2755-S Chr5 1572994 1572995 0 0 Deletion 1 INTERGENIC HOMO FN2755-S Chr5 16446053 C-T 0 0 Single Base Substitution 0 INTRON HET FN2755-S Chr5 17611700 17611701 0 0 Insertion 1 frameshift_variant HET LOC_Os05g30380 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2755-S Chr5 18350712 18350713 0 0 Deletion 1 Homo FN2755-S Chr5 20131613 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2755-S Chr5 20510461 20510462 0 0 Deletion 1 Homo FN2755-S Chr5 21422062 21422064 0 0 Deletion 2 upstream_gene_variant HET FN2755-S Chr5 25393618 25393627 0 0 Deletion 9 disruptive_inframe_deletion&splice_region_variant Homo LOC_Os05g43680 expressed protein FN2755-S Chr5 6652240 6652240 0 0 Insertion 1 downstream_gene_variant HET FN2755-S Chr5 7147889 Chr3 10130140 0 Translocation 0 FN2755-S Chr5 7640675 A-T 0 0 Single Base Substitution 0 Homo FN2755-S Chr5 8545926 8545927 0 0 Deletion 1 intergenic_region HET FN2755-S Chr5 8994961 8994961 0 0 Insertion 1 downstream_gene_variant HET FN2755-S Chr5 987248 Chr2 30921565 0 Translocation 0 FN2755-S Chr5 9893210 9893211 0 0 Deletion 1 downstream_gene_variant HET FN2755-S Chr6 11735568 Chr5 18456079 0 Translocation 0 FN2755-S Chr6 11736057 Chr5 18456109 0 Translocation 0 FN2755-S Chr6 11934001 11951000 0 0 Deletion 16999 LOC_Os06g20730 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2755-S Chr6 11934001 11951000 0 0 Deletion 16999 LOC_Os06g20740 hypothetical protein FN2755-S Chr6 11934001 11951000 0 0 Deletion 16999 LOC_Os06g20800 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2755-S Chr6 16082829 16082830 0 0 Deletion 1 frameshift_variant Homo LOC_Os06g28310 retrotransposon protein, putative, unclassified, expressed FN2755-S Chr6 16785006 16785011 0 0 Deletion 5 Homo FN2755-S Chr6 17783796 17783797 0 0 Deletion 1 HET FN2755-S Chr6 20681932 T-C 0 0 Single Base Substitution 0 HET FN2755-S Chr6 21705788 C-T 0 0 Single Base Substitution 0 HET FN2755-S Chr6 22043188 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2755-S Chr6 22684837 22684837 0 0 Insertion 1 intergenic_region HET FN2755-S Chr6 24684474 24686396 0 0 Inversion 0 LOC_Os06g41250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2755-S Chr6 25372163 A-T 0 0 Single Base Substitution 0 HET FN2755-S Chr6 25586141 Chr2 15328433 0 Translocation 0 FN2755-S Chr6 26250904 26250908 0 0 Deletion 4 HET FN2755-S Chr6 2740088 C-T 0 0 Single Base Substitution 0 HET FN2755-S Chr6 29983219 29983219 0 0 Insertion 1 upstream_gene_variant HET FN2755-S Chr6 8983079 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2755-S Chr7 10123760 Chr4 10495508 0 Translocation 0 FN2755-S Chr7 1040851 1040856 0 0 Deletion 5 Homo FN2755-S Chr7 16836657 16836657 0 0 Insertion 1 frameshift_variant&stop_gained HET LOC_Os07g28760 transposon protein, putative, unclassified, expressed FN2755-S Chr7 18289125 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g30890 transposon protein, putative, unclassified, expressed FN2755-S Chr7 20419501 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2755-S Chr7 2042434 G-T 0 0 Single Base Substitution 0 Homo FN2755-S Chr7 20923497 C-T 0 0 Single Base Substitution 0 Homo FN2755-S Chr7 251638 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2755-S Chr7 2524882 G-C 0 0 Single Base Substitution 0 Homo FN2755-S Chr7 27351637 27351637 0 0 Insertion 1 intron_variant HET FN2755-S Chr7 5110292 A-G 0 0 Single Base Substitution 0 HET FN2755-S Chr7 6156198 6156199 0 0 Deletion 1 splice_acceptor_variant&intron_variant HET LOC_Os07g11160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2755-S Chr7 6227649 6227652 0 0 Deletion 3 Homo FN2755-S Chr7 6910651 T-C 0 0 Single Base Substitution 0 HET FN2755-S Chr7 8252066 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2755-S Chr7 9914851 9914852 0 0 Deletion 1 downstream_gene_variant HET FN2755-S Chr8 10312430 A-G 0 0 Single Base Substitution 0 HET FN2755-S Chr8 10893001 10908000 0 0 Deletion 14999 LOC_Os08g17784 purple acid phosphatase, putative, expressed FN2755-S Chr8 10893001 10908000 0 0 Deletion 14999 LOC_Os08g17890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2755-S Chr8 1288043 1288059 0 0 Deletion 16 frameshift_variant&start_lost HET LOC_Os08g02960 expressed protein FN2755-S Chr8 1362522 1362523 0 0 Deletion 1 upstream_gene_variant HET FN2755-S Chr8 1421213 1421215 0 0 Deletion 2 upstream_gene_variant HET FN2755-S Chr8 14221350 14221351 0 0 Deletion 1 upstream_gene_variant HET FN2755-S Chr8 15899208 15899208 0 0 Insertion 1 downstream_gene_variant HET FN2755-S Chr8 16449095 Chr6 24693727 0 Translocation 0 FN2755-S Chr8 17445053 17445054 0 0 Deletion 1 upstream_gene_variant HET FN2755-S Chr8 17769894 A-G 0 0 Single Base Substitution 0 HET FN2755-S Chr8 18628532 Chr4 2531450 0 Translocation 0 FN2755-S Chr8 19749963 Chr2 5753914 0 Translocation 0 FN2755-S Chr8 25156066 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g39730 cytochrome P450, putative, expressed FN2755-S Chr8 4126990 Chr1 3219749 0 Translocation 0 FN2755-S Chr8 8178750 Chr3 28268378 0 Translocation 0 FN2755-S Chr8 8545561 8545562 0 0 Deletion 1 downstream_gene_variant HET FN2755-S Chr8 9807985 9807986 0 0 Deletion 1 frameshift_variant HET LOC_Os08g16080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2755-S Chr9 11135138 11135138 0 0 Insertion 1 intron_variant HET FN2755-S Chr9 13052001 13081000 0 0 Deletion 28999 LOC_Os09g21590 conserved hypothetical protein FN2755-S Chr9 13052001 13081000 0 0 Deletion 28999 LOC_Os09g21600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2755-S Chr9 13052001 13081000 0 0 Deletion 28999 LOC_Os09g22000 hydrolase, HAD superfamily, Cof family, putative, expressed FN2755-S Chr9 13771289 13771316 0 0 Deletion 27 HET FN2755-S Chr9 18946833 18946833 0 0 Insertion 1 INTERGENIC HOMO FN2755-S Chr9 214333 214333 0 0 Insertion 1 frameshift_variant HET LOC_Os09g01250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2755-S Chr9 21485649 Chr3 5772142 0 Translocation 0 LOC_Os03g11210 DUF538 domain containing protein, putative, expressed FN2755-S Chr9 21486962 Chr3 5772135 0 Translocation 0 LOC_Os03g11210 DUF538 domain containing protein, putative, expressed FN2755-S Chr9 21486980 Chr1 40120894 0 Translocation 0 LOC_Os01g69040 zinc finger, C3HC4 type domain containing protein, expressed FN2755-S Chr9 21487539 Chr1 40120848 0 Translocation 0 LOC_Os01g69040 zinc finger, C3HC4 type domain containing protein, expressed