FN2760-S Chr1 1041395 1041411 0 0 Deletion 16 INTERGENIC HOMO FN2760-S Chr1 13350428 13350428 0 0 Insertion 21 upstream_gene_variant HET FN2760-S Chr1 16944540 16945180 0 0 Deletion 640 upstream_gene_variant HET FN2760-S Chr1 22489499 22489505 0 0 Deletion 6 UTR_5_PRIME HOMO FN2760-S Chr1 24079900 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g42380 pleiotropic drug resistance protein, putative, expressed FN2760-S Chr1 33415770 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr1 36614284 36614288 0 0 Deletion 4 upstream_gene_variant HET FN2760-S Chr1 37224120 37224120 0 0 Insertion 1 frameshift_variant HET LOC_Os01g64080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2760-S Chr1 38963367 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN2760-S Chr1 42614682 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2760-S Chr1 4754142 4754150 0 0 Deletion 8 INTRON HOMO FN2760-S Chr10 10023519 10023519 0 0 Insertion 2 INTERGENIC HET FN2760-S Chr10 14374939 14374998 0 0 Deletion 59 upstream_gene_variant HET FN2760-S Chr10 14811180 G-A 0 0 Single Base Substitution 0 INTRON HET FN2760-S Chr10 15468601 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2760-S Chr10 4984701 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2760-S Chr10 6421368 Chr4 4049220 0 Translocation 0 FN2760-S Chr10 6770999 6770999 0 0 Insertion 1 downstream_gene_variant HET FN2760-S Chr11 10493781 10493782 0 0 Deletion 1 upstream_gene_variant HET FN2760-S Chr11 12166884 12166884 0 0 Insertion 77 intergenic_region HET FN2760-S Chr11 12183558 12183723 0 0 Deletion 165 intergenic_region HET FN2760-S Chr11 17738803 17738803 0 0 Insertion 48 downstream_gene_variant HET FN2760-S Chr11 18750348 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2760-S Chr11 18835617 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2760-S Chr11 19514303 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g33010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2760-S Chr11 20261136 20261138 0 0 Deletion 2 INTERGENIC HET FN2760-S Chr11 21228138 21228138 0 0 Insertion 1 downstream_gene_variant HET FN2760-S Chr11 26258692 Chr4 6930152 0 Translocation 0 FN2760-S Chr11 3974782 3974782 0 0 Insertion 2 downstream_gene_variant HET FN2760-S Chr12 11156387 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr12 13377146 13377231 0 0 Deletion 85 upstream_gene_variant HET FN2760-S Chr12 15196896 15196912 0 0 Deletion 16 upstream_gene_variant HET FN2760-S Chr12 17193510 17193513 0 0 Deletion 3 upstream_gene_variant HET FN2760-S Chr12 4947647 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr12 5162135 5369004 0 0 Inversion 206869 FN2760-S Chr12 5162140 5369003 0 0 Inversion 206863 FN2760-S Chr12 7476720 G-T 0 0 Single Base Substitution 0 INTRON HET FN2760-S Chr12 8754309 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g15340 retrotransposon protein, putative, LINE subclass, expressed FN2760-S Chr2 22809468 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr2 24119268 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr2 26741205 26741205 0 0 Insertion 1 upstream_gene_variant HET FN2760-S Chr2 27006153 27006153 0 0 Insertion 1 upstream_gene_variant HET FN2760-S Chr2 31575783 31575783 0 0 Insertion 43 upstream_gene_variant HET FN2760-S Chr2 8324181 8324262 0 0 Deletion 81 inframe_deletion HET LOC_Os02g14910 bZIP transcription factor family protein, putative, expressed FN2760-S Chr3 15273771 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr3 1636478 1636478 0 0 Insertion 2 INTRON HET FN2760-S Chr3 24351741 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2760-S Chr3 3926633 3926642 0 0 Deletion 9 upstream_gene_variant HET FN2760-S Chr3 5081935 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr3 8333818 8333819 0 0 Deletion 1 INTERGENIC HET FN2760-S Chr4 11697497 11697498 0 0 Deletion 1 downstream_gene_variant HET FN2760-S Chr4 1879352 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2760-S Chr4 20478531 Chr3 26496410 0 Translocation 0 FN2760-S Chr4 23352079 Chr3 12730507 0 Translocation 0 FN2760-S Chr4 23624265 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2760-S Chr4 27189684 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr4 32458876 32458877 0 0 Deletion 1 INTERGENIC HET FN2760-S Chr5 13167871 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g23090 retrotransposon protein, putative, unclassified FN2760-S Chr5 18706226 18706251 0 0 Deletion 25 INTERGENIC HOMO FN2760-S Chr5 19329526 G-A 0 0 Single Base Substitution 0 INTRON HET FN2760-S Chr5 20922188 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr5 23363511 23363511 0 0 Insertion 92 upstream_gene_variant HET FN2760-S Chr5 2688519 2688519 0 0 Insertion 2 upstream_gene_variant HET FN2760-S Chr5 5637477 5637477 0 0 Insertion 4 INTERGENIC HET FN2760-S Chr5 6369909 Chr4 16080755 0 Translocation 0 FN2760-S Chr5 7672215 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr5 9884707 9884707 0 0 Insertion 1 upstream_gene_variant HET FN2760-S Chr6 10986253 10986255 0 0 Deletion 2 upstream_gene_variant HET FN2760-S Chr6 11656598 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr6 16907000 16907011 0 0 Deletion 11 INTERGENIC HOMO FN2760-S Chr6 1931718 A-C 0 0 Single Base Substitution 0 INTRON HET FN2760-S Chr6 23279874 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g39210 transposon protein, putative, unclassified, expressed FN2760-S Chr6 23897737 23897743 0 0 Deletion 6 INTERGENIC HOMO FN2760-S Chr6 29567318 29567318 0 0 Insertion 1 intergenic_region HET FN2760-S Chr7 16449369 Chr1 34373767 0 Translocation 0 FN2760-S Chr7 22021365 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2760-S Chr7 7232423 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr7 8883502 Chr4 13157426 0 Translocation 0 FN2760-S Chr7 8886936 Chr4 13157416 0 Translocation 0 FN2760-S Chr7 9697229 9697229 0 0 Insertion 19 downstream_gene_variant HET FN2760-S Chr8 10726780 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr8 1145855 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2760-S Chr8 1146210 1146219 0 0 Deletion 9 INTERGENIC HET FN2760-S Chr8 13592008 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2760-S Chr8 14996931 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr8 17584919 17584919 0 0 Insertion 52 upstream_gene_variant HET FN2760-S Chr8 25737633 25737636 0 0 Deletion 3 splice_region_variant&intron_variant HET FN2760-S Chr8 27640229 27640241 0 0 Deletion 12 UTR_5_PRIME HOMO FN2760-S Chr8 7730860 7730860 0 0 Insertion 4 upstream_gene_variant HET FN2760-S Chr8 8346774 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr8 8807498 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2760-S Chr8 9709994 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr9 15096594 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g25200 protein binding protein, putative, expressed FN2760-S Chr9 154442 154445 0 0 Deletion 3 INTERGENIC HOMO FN2760-S Chr9 16064093 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr9 16277900 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr9 1849659 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2760-S Chr9 3769920 3769922 0 0 Deletion 2 downstream_gene_variant HET FN2760-S Chr9 5167642 Chr5 11350817 0 Translocation 0 LOC_Os05g19530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2760-S Chr9 5167642 Chr5 11350817 0 Translocation 0 LOC_Os09g09580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2760-S Chr9 5815002 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2760-S Chr9 85582 85582 0 0 Insertion 2 downstream_gene_variant HET FN2760-S Chr9 927556 C-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO