FN2780-S Chr1 19928700 G-A 0 0 Single Base Substitution 0 HET FN2780-S Chr1 25415968 A-G 0 0 Single Base Substitution 0 Homo FN2780-S Chr1 34290017 T-C 0 0 Single Base Substitution 0 Homo FN2780-S Chr1 36740767 G-A 0 0 Single Base Substitution 0 HET FN2780-S Chr1 7008018 G-A 0 0 Single Base Substitution 0 HET FN2780-S Chr1 8470263 G-A 0 0 Single Base Substitution 0 HET FN2780-S Chr10 11474082 C-G 0 0 Single Base Substitution 0 HET FN2780-S Chr10 20613565 C-T 0 0 Single Base Substitution 0 HET FN2780-S Chr10 21135259 C-T 0 0 Single Base Substitution 0 HET FN2780-S Chr10 6321143 6321149 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os10g11400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2780-S Chr10 6437058 7381018 0 0 Inversion 0 FN2780-S Chr10 6437058 7381018 0 0 Inversion 0 LOC_Os10g13610 retrotransposon protein, putative, unclassified, expressed FN2780-S Chr10 6447814 6525006 0 0 Inversion 0 FN2780-S Chr10 6447814 6525006 0 0 Inversion 0 LOC_Os10g11794 retrotransposon protein, putative, unclassified, expressed FN2780-S Chr10 6521819 Chr6 25806092 0 Translocation 0 LOC_Os06g42950 retrotransposon protein, putative, unclassified FN2780-S Chr10 6521819 Chr6 25806092 0 Translocation 0 LOC_Os10g11794 retrotransposon protein, putative, unclassified, expressed FN2780-S Chr10 6524991 Chr6 25806193 0 Translocation 0 LOC_Os06g42950 retrotransposon protein, putative, unclassified FN2780-S Chr10 6524991 Chr6 25806193 0 Translocation 0 LOC_Os10g11794 retrotransposon protein, putative, unclassified, expressed FN2780-S Chr10 6713728 7030794 0 0 Inversion 0 FN2780-S Chr10 6713728 7030794 0 0 Inversion 0 LOC_Os10g12620 protein kinase domain containing protein, expressed FN2780-S Chr10 6895728 G-A 0 0 Single Base Substitution 0 HET FN2780-S Chr10 6895729 T-G 0 0 Single Base Substitution 0 HET FN2780-S Chr10 6903567 T-A 0 0 Single Base Substitution 0 HET FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13440 monosaccharide-sensing protein 2, putative, expressed FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13450 expressed protein FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13460 hypothetical protein FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13480 retrotransposon protein, putative, Ty3-gypsy subclass FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13490 retrotransposon protein, putative, unclassified, expressed FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13500 expressed protein FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13505 expressed protein FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13510 transposable element protein, putative, containing Pfam profile: PF03108, MuDR, expressed FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13540 hypothetical protein FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13550 endonuclease/exonuclease/phosphatase family domain containing protein, expressed FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13560 hypothetical protein FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13570 retrotransposon protein, putative, Ty3-gypsy subclass FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13580 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13590 retrotransposon protein, putative, Ty1-copia subclass FN2780-S Chr10 7263001 7381000 0 0 Deletion 117999 LOC_Os10g13610 retrotransposon protein, putative, unclassified, expressed FN2780-S Chr10 7716993 A-T 0 0 Single Base Substitution 0 HET FN2780-S Chr10 7915984 C-T 0 0 Single Base Substitution 0 HET FN2780-S Chr10 9479335 C-T 0 0 Single Base Substitution 0 HET FN2780-S Chr11 15482665 G-A 0 0 Single Base Substitution 0 HET FN2780-S Chr11 15786506 T-C 0 0 Single Base Substitution 0 HET FN2780-S Chr11 16461811 16461813 0 0 Deletion 2 HET FN2780-S Chr11 1837676 C-T 0 0 Single Base Substitution 0 HET FN2780-S Chr11 18807208 G-T 0 0 Single Base Substitution 0 HET FN2780-S Chr11 20534696 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g35050 expressed protein FN2780-S Chr11 27256406 A-G 0 0 Single Base Substitution 0 HET FN2780-S Chr11 8739896 C-T 0 0 Single Base Substitution 0 HET FN2780-S Chr11 8891617 8891618 0 0 Deletion 1 frameshift_variant HET LOC_Os11g15690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2780-S Chr11 9739365 9739371 0 0 Deletion 6 HET FN2780-S Chr11 9964029 G-A 0 0 Single Base Substitution 0 HET FN2780-S Chr11 9964030 G-A 0 0 Single Base Substitution 0 HET FN2780-S Chr12 12148017 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g21610 expressed protein FN2780-S Chr12 18923567 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g31470 retrotransposon protein, putative, unclassified, expressed FN2780-S Chr12 27223872 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g43850 retrotransposon protein, putative, unclassified, expressed FN2780-S Chr12 27223969 T-G 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os12g43850 retrotransposon protein, putative, unclassified, expressed FN2780-S Chr12 3699304 Chr4 9565765 0 Translocation 0 FN2780-S Chr12 4803142 A-G 0 0 Single Base Substitution 0 Homo FN2780-S Chr12 4945063 4945067 0 0 Deletion 4 Homo FN2780-S Chr12 5004621 5004634 0 0 Deletion 13 frameshift_variant Homo LOC_Os12g09530 retrotransposon protein, putative, unclassified, expressed FN2780-S Chr12 5004699 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os12g09530 retrotransposon protein, putative, unclassified, expressed FN2780-S Chr12 5010864 G-A 0 0 Single Base Substitution 0 Homo FN2780-S Chr2 13058467 G-A 0 0 Single Base Substitution 0 HET FN2780-S Chr2 15071134 C-G 0 0 Single Base Substitution 0 HET FN2780-S Chr2 16081442 T-C 0 0 Single Base Substitution 0 HET FN2780-S Chr2 16303287 16303289 0 0 Deletion 2 HET FN2780-S Chr2 21307827 C-A 0 0 Single Base Substitution 0 HET FN2780-S Chr2 23505711 A-G 0 0 Single Base Substitution 0 HET FN2780-S Chr2 23690461 23690463 0 0 Deletion 2 HET FN2780-S Chr2 32557505 32557507 0 0 Insertion 2 HET FN2780-S Chr2 8757855 A-G 0 0 Single Base Substitution 0 HET FN2780-S Chr3 19201822 C-T 0 0 Single Base Substitution 0 HET FN2780-S Chr3 2346431 A-T 0 0 Single Base Substitution 0 HET FN2780-S Chr3 2566882 A-G 0 0 Single Base Substitution 0 HET FN2780-S Chr3 28376025 T-C 0 0 Single Base Substitution 0 HET FN2780-S Chr3 28489155 C-T 0 0 Single Base Substitution 0 HET FN2780-S Chr3 31186005 A-C 0 0 Single Base Substitution 0 HET FN2780-S Chr3 32518008 C-T 0 0 Single Base Substitution 0 HET FN2780-S Chr3 3825176 C-T 0 0 Single Base Substitution 0 HET FN2780-S Chr4 26752061 C-T 0 0 Single Base Substitution 0 Homo FN2780-S Chr4 33886357 C-T 0 0 Single Base Substitution 0 Homo FN2780-S Chr5 11970393 11970394 0 0 Deletion 1 frameshift_variant HET LOC_Os05g20400 transposon protein, putative, unclassified, expressed FN2780-S Chr5 14436459 T-C 0 0 Single Base Substitution 0 HET FN2780-S Chr5 18628221 18628223 0 0 Deletion 2 HET FN2780-S Chr5 21164600 C-T 0 0 Single Base Substitution 0 HET FN2780-S Chr5 27093108 G-A 0 0 Single Base Substitution 0 HET FN2780-S Chr6 26987960 C-T 0 0 Single Base Substitution 0 HET FN2780-S Chr6 4214318 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g08530 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed FN2780-S Chr6 4305915 G-T 0 0 Single Base Substitution 0 HET FN2780-S Chr6 4741712 C-A 0 0 Single Base Substitution 0 HET FN2780-S Chr6 4741713 G-T 0 0 Single Base Substitution 0 HET FN2780-S Chr6 9510510 G-T 0 0 Single Base Substitution 0 HET FN2780-S Chr7 10397010 G-T 0 0 Single Base Substitution 0 HET FN2780-S Chr7 10462746 G-A 0 0 Single Base Substitution 0 HET FN2780-S Chr7 14800895 C-T 0 0 Single Base Substitution 0 HET FN2780-S Chr7 18856993 18857006 0 0 Deletion 13 Homo FN2780-S Chr7 19934021 C-T 0 0 Single Base Substitution 0 HET FN2780-S Chr7 20369485 C-A 0 0 Single Base Substitution 0 HET FN2780-S Chr7 27018725 C-A 0 0 Single Base Substitution 0 HET FN2780-S Chr7 27080697 27080698 0 0 Deletion 1 frameshift_variant HET LOC_Os07g45400 expressed protein FN2780-S Chr7 5663836 Chr5 12664410 0 Translocation 0 LOC_Os05g22360 hypothetical protein FN2780-S Chr7 5663836 Chr5 12664410 0 Translocation 0 LOC_Os07g10520 nucleotide binding protein, putative, expressed FN2780-S Chr7 5664530 Chr5 12664399 0 Translocation 0 LOC_Os05g22360 hypothetical protein FN2780-S Chr7 5664530 Chr5 12664399 0 Translocation 0 LOC_Os07g10520 nucleotide binding protein, putative, expressed FN2780-S Chr7 8968083 8968100 0 0 Deletion 17 frameshift_variant HET LOC_Os07g15460 metal transporter Nramp6, putative, expressed FN2780-S Chr8 10627985 T-C 0 0 Single Base Substitution 0 HET FN2780-S Chr8 13926643 A-T 0 0 Single Base Substitution 0 HET FN2780-S Chr8 15173753 G-A 0 0 Single Base Substitution 0 HET FN2780-S Chr8 17833616 T-A 0 0 Single Base Substitution 0 Homo FN2780-S Chr8 21748158 C-T 0 0 Single Base Substitution 0 HET FN2780-S Chr8 27426575 A-T 0 0 Single Base Substitution 0 HET FN2780-S Chr9 21950254 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g38100 phosphate carrier protein, mitochondrial precursor, putative, expressed FN2780-S Chr9 21950255 C-T 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os09g38100 phosphate carrier protein, mitochondrial precursor, putative, expressed FN2780-S Chr9 4866322 4866323 0 0 Deletion 1 frameshift_variant Homo LOC_Os09g09100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2780-S Chr9 8972098 C-T 0 0 Single Base Substitution 0 HET