FN2883-S Chr1 14458287 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2883-S Chr1 22065252 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2883-S Chr1 27462752 27462753 0 0 Deletion 1 upstream_gene_variant HET FN2883-S Chr1 38351088 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2883-S Chr1 40965392 40965393 0 0 Deletion 1 INTERGENIC HOMO FN2883-S Chr1 7806665 7806681 0 0 Deletion 16 UTR_3_PRIME HET FN2883-S Chr10 10187577 10187578 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os10g20260 CSLF7 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed FN2883-S Chr10 15088133 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2883-S Chr10 16416194 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2883-S Chr10 18648841 Chr1 31373321 0 Translocation 0 FN2883-S Chr10 18648861 18899542 0 0 Inversion 250681 FN2883-S Chr10 18899533 Chr1 31374973 0 Translocation 0 FN2883-S Chr10 19299744 19299745 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os10g36090 LTPL156 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN2883-S Chr10 3457814 3457817 0 0 Deletion 3 upstream_gene_variant HET FN2883-S Chr10 3668606 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2883-S Chr10 3668608 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2883-S Chr10 6377357 6377365 0 0 Deletion 8 INTERGENIC HET FN2883-S Chr10 6401309 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2883-S Chr11 11746812 T-C 0 0 Single Base Substitution 0 INTRON HET FN2883-S Chr11 12935029 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g22500 retrotransposon, putative, centromere-specific, expressed FN2883-S Chr11 14100823 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2883-S Chr11 17184178 17184180 0 0 Deletion 2 upstream_gene_variant HET FN2883-S Chr11 20783228 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2883-S Chr11 22562642 Chr10 9197237 0 Translocation 0 FN2883-S Chr11 22562649 Chr10 9196660 0 Translocation 0 FN2883-S Chr11 4456690 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2883-S Chr11 5533540 5533549 0 0 Deletion 9 CODON_DELETION HET LOC_Os11g10200 OsFBX413 - F-box domain containing protein, expressed FN2883-S Chr12 11500530 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN2883-S Chr12 13435261 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2883-S Chr12 17244519 17244519 0 0 Insertion 1 downstream_gene_variant HET FN2883-S Chr12 9793253 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2883-S Chr12 9864751 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2883-S Chr2 12124272 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2883-S Chr2 1504979 1504980 0 0 Deletion 1 upstream_gene_variant HET FN2883-S Chr2 17171550 17171559 0 0 Deletion 9 INTRON HET FN2883-S Chr2 20054662 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2883-S Chr2 24224134 24224135 0 0 Deletion 1 INTRON HET FN2883-S Chr2 25727567 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2883-S Chr2 26987485 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2883-S Chr2 2723665 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g05600 expressed protein FN2883-S Chr2 30176294 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g49390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2883-S Chr2 8240152 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2883-S Chr2 9331009 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2883-S Chr3 31917782 31917783 0 0 Deletion 1 INTERGENIC HET FN2883-S Chr3 32505819 32505823 0 0 Deletion 4 INTERGENIC HET FN2883-S Chr3 34121030 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g59980 retrotransposon protein, putative, unclassified, expressed FN2883-S Chr3 4711406 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2883-S Chr4 1206266 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2883-S Chr4 13378724 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2883-S Chr4 13888214 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2883-S Chr4 17394803 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2883-S Chr4 27441010 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2883-S Chr4 45138 45138 0 0 Insertion 93 downstream_gene_variant HET FN2883-S Chr5 1949289 1949289 0 0 Insertion 1 downstream_gene_variant HET FN2883-S Chr5 1965199 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2883-S Chr5 20672718 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2883-S Chr5 20860796 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2883-S Chr5 9425717 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2883-S Chr6 11961524 11961525 0 0 Deletion 1 INTERGENIC HOMO FN2883-S Chr6 12916374 12916386 0 0 Deletion 12 INTERGENIC HOMO FN2883-S Chr6 20491399 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g35160 CAMK_KIN1/SNF1/Nim1_like.26 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN2883-S Chr6 30285103 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g50010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2883-S Chr6 30285104 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g50010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2883-S Chr6 3357094 3357094 0 0 Insertion 1 upstream_gene_variant HET FN2883-S Chr6 94616 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2883-S Chr7 20462942 20462942 0 0 Insertion 2 upstream_gene_variant HET FN2883-S Chr7 7250670 7250691 0 0 Deletion 21 intron_variant HET FN2883-S Chr7 7852045 7852048 0 0 Deletion 3 INTRON HOMO FN2883-S Chr8 16441084 16441161 0 0 Deletion 77 downstream_gene_variant HET FN2883-S Chr8 2233762 Chr5 28810789 0 Translocation 0 FN2883-S Chr8 23996433 23996433 0 0 Insertion 46 3_prime_UTR_variant HET FN2883-S Chr8 24064919 24064919 0 0 Insertion 1 upstream_gene_variant HET FN2883-S Chr8 26062588 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g41270 endonuclease/exonuclease/phosphatase family domain containing protein, expressed FN2883-S Chr8 27801040 A-C 0 0 Single Base Substitution 0 INTRON HET FN2883-S Chr8 794187 794187 0 0 Insertion 2 upstream_gene_variant HET FN2883-S Chr8 8359394 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g13950 transposon protein, putative, CACTA, En/Spm sub-class FN2883-S Chr8 9335286 Chr2 19023541 0 Translocation 0 LOC_Os02g32200 thioesterase family protein, putative, expressed FN2883-S Chr9 12763238 12763238 0 0 Insertion 6 INTERGENIC HET FN2883-S Chr9 19366599 19366602 0 0 Deletion 3 CODON_DELETION HOMO LOC_Os09g32440 endonuclease/exonuclease/phosphatase family domain containing protein, expressed FN2883-S Chr9 21123409 21123431 0 0 Deletion 22 downstream_gene_variant HET FN2883-S Chr9 2623773 2623828 0 0 Deletion 55 downstream_gene_variant HET FN2883-S Chr9 5313975 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g09800 retrotransposon protein, putative, unclassified, expressed FN2883-S Chr9 874090 874090 0 0 Insertion 59 upstream_gene_variant HET