FN2886-S Chr1 10726415 10726424 0 0 Deletion 9 upstream_gene_variant HET FN2886-S Chr1 14574548 14574550 0 0 Deletion 2 frameshift_variant HET LOC_Os01g25710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2886-S Chr1 14947829 14947829 0 0 Insertion 20 downstream_gene_variant HET FN2886-S Chr1 15719436 15719437 0 0 Deletion 1 upstream_gene_variant HET FN2886-S Chr1 16544443 16544452 0 0 Deletion 9 CODON_DELETION HOMO LOC_Os01g29507 retrotransposon, putative, centromere-specific, expressed FN2886-S Chr1 16793534 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2886-S Chr1 17753111 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2886-S Chr1 20105701 20106611 0 0 Inversion 910 FN2886-S Chr1 26368444 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2886-S Chr1 34055245 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g58920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2886-S Chr1 34055246 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g58920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2886-S Chr1 35325160 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2886-S Chr1 41368282 T-A 0 0 Single Base Substitution 0 INTRON HET FN2886-S Chr1 706330 706331 0 0 Deletion 1 upstream_gene_variant HET FN2886-S Chr1 7327267 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2886-S Chr10 1078429 1078434 0 0 Deletion 5 INTRON HOMO FN2886-S Chr10 11131001 11141000 0 0 Deletion 9999 FN2886-S Chr10 12591028 Chr5 17280727 0 Translocation 0 FN2886-S Chr10 12591935 Chr5 17280736 0 Translocation 0 LOC_Os10g24530 retrotransposon protein, putative, Ty3-gypsy subclass FN2886-S Chr10 12592476 Chr4 13572322 0 Translocation 0 LOC_Os10g24540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2886-S Chr10 19502601 19502601 0 0 Insertion 6 upstream_gene_variant HET FN2886-S Chr10 19546145 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os10g36530 mutS domain V family protein, expressed FN2886-S Chr10 1970250 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g04220 retrotransposon protein, putative, unclassified, expressed FN2886-S Chr10 21738024 Chr5 29012573 0 Translocation 0 LOC_Os05g50610 WRKY8, expressed FN2886-S Chr10 6013438 6013448 0 0 Deletion 10 INTRON HOMO FN2886-S Chr10 6560842 Chr8 19480966 0 Translocation 0 FN2886-S Chr11 1480409 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2886-S Chr11 20829930 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2886-S Chr12 10794757 10794759 0 0 Deletion 2 INTERGENIC HET FN2886-S Chr12 11157391 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2886-S Chr12 11659415 11659420 0 0 Deletion 5 INTERGENIC HET FN2886-S Chr12 26336025 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g42370 GTPase of unknown function domain containing protein, putative, expressed FN2886-S Chr12 26489276 27212138 0 0 Inversion 722862 LOC_Os12g43830 NUC189 domain containing protein, expressed FN2886-S Chr12 26489280 27212140 0 0 Inversion 722860 LOC_Os12g43830 NUC189 domain containing protein, expressed FN2886-S Chr12 2836235 2836257 0 0 Deletion 22 SPLICE_SITE_ACCEPTOR HOMO LOC_Os12g06080 expressed protein FN2886-S Chr12 5633839 5633865 0 0 Deletion 26 intergenic_region HET FN2886-S Chr12 5932736 5932759 0 0 Deletion 23 upstream_gene_variant HET FN2886-S Chr2 16056964 16056972 0 0 Deletion 8 INTERGENIC HET FN2886-S Chr2 23922661 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2886-S Chr2 24992909 24992928 0 0 Deletion 19 UTR_3_PRIME HET FN2886-S Chr2 27000271 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2886-S Chr2 28479403 28479404 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os02g46660 SNARE associated Golgi protein, putative, expressed FN2886-S Chr2 32283110 32283113 0 0 Deletion 3 CODON_DELETION HET LOC_Os02g52790 PB1 domain containing protein, expressed FN2886-S Chr2 33244708 33244708 0 0 Insertion 1 upstream_gene_variant HET FN2886-S Chr2 34318710 34318711 0 0 Deletion 1 downstream_gene_variant HET FN2886-S Chr2 4402124 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2886-S Chr2 7853943 A-T 0 0 Single Base Substitution 0 INTRON HET FN2886-S Chr3 16590540 T-G 0 0 Single Base Substitution 0 INTRON HET FN2886-S Chr3 19836710 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2886-S Chr3 19836711 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g35788 retrotransposon protein, putative, unclassified, expressed FN2886-S Chr3 30411548 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2886-S Chr4 17451023 17451087 0 0 Deletion 64 upstream_gene_variant HET FN2886-S Chr4 23575027 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2886-S Chr4 25990439 25990439 0 0 Insertion 2 upstream_gene_variant HET FN2886-S Chr4 33116771 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2886-S Chr4 8173198 8173199 0 0 Deletion 1 INTERGENIC HET FN2886-S Chr4 8908813 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2886-S Chr4 9158939 9158939 0 0 Insertion 1 upstream_gene_variant HET FN2886-S Chr5 11831464 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2886-S Chr5 14858900 C-T 0 0 Single Base Substitution 0 INTRON HET FN2886-S Chr5 21421086 21421086 0 0 Insertion 82 upstream_gene_variant HET FN2886-S Chr5 25945053 G-A 0 0 Single Base Substitution 0 INTRON HET FN2886-S Chr5 29013001 29022000 0 0 Deletion 8999 LOC_Os05g50624 transposon protein, putative, unclassified, expressed FN2886-S Chr5 29013001 29022000 0 0 Deletion 8999 LOC_Os05g50760 hypothetical protein FN2886-S Chr5 5612229 5612248 0 0 Deletion 19 INTERGENIC HET FN2886-S Chr5 8619142 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2886-S Chr5 9344219 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2886-S Chr5 9805000 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2886-S Chr6 15636632 15636636 0 0 Deletion 4 INTERGENIC HOMO FN2886-S Chr6 29708618 Chr1 38333447 0 Translocation 0 LOC_Os06g49010 OsSPL12 - SBP-box gene family member, expressed FN2886-S Chr6 29708619 Chr1 38343534 0 Translocation 0 LOC_Os06g49010 OsSPL12 - SBP-box gene family member, expressed FN2886-S Chr7 11688800 11688802 0 0 Deletion 2 INTERGENIC HET FN2886-S Chr7 12154985 12154987 0 0 Deletion 2 intergenic_region HET FN2886-S Chr7 23940250 23940261 0 0 Deletion 11 upstream_gene_variant HET FN2886-S Chr7 5632013 Chr1 24093297 0 Translocation 0 FN2886-S Chr7 5634046 Chr1 24093296 0 Translocation 0 LOC_Os07g10470 transposon protein, putative, unclassified, expressed FN2886-S Chr7 6337189 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2886-S Chr7 8994596 T-C 0 0 Single Base Substitution 0 INTRON HET FN2886-S Chr7 9160357 9160361 0 0 Deletion 4 INTERGENIC HET FN2886-S Chr7 9910144 9910144 0 0 Insertion 1 downstream_gene_variant HET FN2886-S Chr8 16774470 16774472 0 0 Deletion 2 downstream_gene_variant HET FN2886-S Chr8 17975894 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2886-S Chr8 20810743 20810744 0 0 Deletion 1 INTRON HET FN2886-S Chr8 27566303 27566306 0 0 Deletion 3 UTR_3_PRIME HET FN2886-S Chr8 5525361 5526514 0 0 Inversion 1153 LOC_Os08g09530 retrotransposon protein, putative, Ty3-gypsy subclass FN2886-S Chr8 6303539 Chr2 9192297 0 Translocation 0 FN2886-S Chr8 7269447 7269447 0 0 Insertion 2 upstream_gene_variant HET FN2886-S Chr8 775297 775341 0 0 Deletion 44 upstream_gene_variant HET FN2886-S Chr9 16033820 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN2886-S Chr9 21088448 21088449 0 0 Deletion 1 INTERGENIC HET FN2886-S Chr9 2843673 2843674 0 0 Deletion 1 intergenic_region HET FN2886-S Chr9 5674370 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2886-S Chr9 6498092 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2886-S Chr9 7514996 7515005 0 0 Deletion 9 CODON_CHANGE_PLUS_CODON_DELETION HOMO LOC_Os09g13030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2886-S Chr9 8253070 8253071 0 0 Deletion 1 downstream_gene_variant HET