FN2887-S Chr1 2472798 2834429 0 0 Inversion 361631 LOC_Os01g05940 receptor kinase, putative, expressed FN2887-S Chr1 28153526 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr1 29852780 G-T 0 0 Single Base Substitution 0 INTRON HET FN2887-S Chr1 38709392 38709398 0 0 Deletion 6 INTERGENIC HET FN2887-S Chr1 40366243 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr1 41873357 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g72210 early-responsive to dehydration protein-related, putative, expressed FN2887-S Chr1 41873364 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g72210 early-responsive to dehydration protein-related, putative, expressed FN2887-S Chr1 7830182 7830183 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os01g13970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2887-S Chr10 2675879 2675881 0 0 Deletion 2 downstream_gene_variant HET FN2887-S Chr10 6935557 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr11 10820035 10820035 0 0 Insertion 1 downstream_gene_variant HET FN2887-S Chr11 11568447 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2887-S Chr11 15119214 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2887-S Chr11 1599362 1599362 0 0 Insertion 127 frameshift_variant&stop_gained HET LOC_Os11g03960 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2887-S Chr11 23172825 23172827 0 0 Deletion 2 INTRON HOMO FN2887-S Chr11 28110130 28110148 0 0 Deletion 18 upstream_gene_variant HET FN2887-S Chr11 587041 587041 0 0 Insertion 1 upstream_gene_variant HET FN2887-S Chr2 18742844 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr2 21185168 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr2 21185169 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr2 21185805 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr2 24514837 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2887-S Chr2 27500261 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2887-S Chr2 32934702 32934709 0 0 Deletion 7 INTRON HOMO FN2887-S Chr2 35746566 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2887-S Chr3 13479599 13479868 0 0 Deletion 269 upstream_gene_variant HET FN2887-S Chr3 20594235 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr3 20594236 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr3 21608301 21608314 0 0 Deletion 13 INTERGENIC HET FN2887-S Chr3 23137006 C-T 0 0 Single Base Substitution 0 INTRON HET FN2887-S Chr3 33251469 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr4 12124139 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr4 15508538 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr4 24707044 24707052 0 0 Deletion 8 FRAME_SHIFT HET LOC_Os04g41670 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2887-S Chr4 33921574 33921577 0 0 Deletion 3 INTERGENIC HET FN2887-S Chr4 34574595 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2887-S Chr4 6549001 6622000 0 0 Deletion 72999 LOC_Os04g11940 conserved hypothetical protein FN2887-S Chr4 6549001 6622000 0 0 Deletion 72999 LOC_Os04g11950 transposon protein, putative, CACTA, En/Spm sub-class FN2887-S Chr4 6549001 6622000 0 0 Deletion 72999 LOC_Os04g11956 expressed protein FN2887-S Chr4 6549001 6622000 0 0 Deletion 72999 LOC_Os04g11962 expressed protein FN2887-S Chr4 6549001 6622000 0 0 Deletion 72999 LOC_Os04g11970 O-methyltransferase, putative, expressed FN2887-S Chr4 6549001 6622000 0 0 Deletion 72999 LOC_Os04g11980 expressed protein FN2887-S Chr4 6549001 6622000 0 0 Deletion 72999 LOC_Os04g11990 retrotransposon, putative, centromere-specific, expressed FN2887-S Chr4 6549001 6622000 0 0 Deletion 72999 LOC_Os04g12000 retrotransposon protein, putative, unclassified, expressed FN2887-S Chr4 6549001 6622000 0 0 Deletion 72999 LOC_Os04g12010 glycosyltransferase, putative, expressed FN2887-S Chr4 6549001 6622000 0 0 Deletion 72999 LOC_Os04g12020 hypothetical protein FN2887-S Chr4 6549001 6622000 0 0 Deletion 72999 LOC_Os04g12030 retrotransposon protein, putative, unclassified, expressed FN2887-S Chr4 6549001 6622000 0 0 Deletion 72999 LOC_Os04g12040 retrotransposon protein, putative, unclassified, expressed FN2887-S Chr4 6549001 6622000 0 0 Deletion 72999 LOC_Os04g12050 retrotransposon, putative, centromere-specific FN2887-S Chr4 9795457 9795458 0 0 Deletion 1 frameshift_variant HET LOC_Os04g17850 retrotransposon protein, putative, unclassified, expressed FN2887-S Chr5 10289090 10289090 0 0 Insertion 12 upstream_gene_variant HET FN2887-S Chr5 10614690 10614695 0 0 Deletion 5 downstream_gene_variant HET FN2887-S Chr5 16890867 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN2887-S Chr5 24225303 24225303 0 0 Insertion 1 upstream_gene_variant HET FN2887-S Chr5 25081157 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr5 29788183 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g51910 retrotransposon protein, putative, unclassified, expressed FN2887-S Chr5 2994592 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr6 10256443 10256443 0 0 Insertion 117 inframe_insertion HET LOC_Os06g17629 hypothetical protein FN2887-S Chr6 11921268 11921280 0 0 Deletion 12 INTRON HOMO FN2887-S Chr6 21336973 Chr4 20208694 0 Translocation 0 FN2887-S Chr6 28050866 28050884 0 0 Deletion 18 intron_variant HET FN2887-S Chr7 14155409 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr7 1653438 1653438 0 0 Insertion 1 upstream_gene_variant HET FN2887-S Chr7 6656326 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr8 10305212 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr8 12886720 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr8 15957561 Chr2 611507 0 Translocation 0 FN2887-S Chr8 20628429 20628442 0 0 Deletion 13 upstream_gene_variant HET FN2887-S Chr8 26322774 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2887-S Chr8 3413001 3449000 0 0 Deletion 35999 LOC_Os08g06190 berberine and berberine like domain containing protein, expressed FN2887-S Chr8 3413001 3449000 0 0 Deletion 35999 LOC_Os08g06200 stomatin-like protein 2, putative, expressed FN2887-S Chr8 3413001 3449000 0 0 Deletion 35999 LOC_Os08g06210 expressed protein FN2887-S Chr8 3413001 3449000 0 0 Deletion 35999 LOC_Os08g06220 transferase, putative, expressed FN2887-S Chr8 3413001 3449000 0 0 Deletion 35999 LOC_Os08g06230 nucleolar GTP-binding protein 1, putative, expressed FN2887-S Chr8 3413001 3449000 0 0 Deletion 35999 LOC_Os08g06240 MYB family transcription factor, putative, expressed FN2887-S Chr8 3413001 3449000 0 0 Deletion 35999 LOC_Os08g06250 tetraspanin family protein, putative, expressed FN2887-S Chr8 3413001 3449000 0 0 Deletion 35999 LOC_Os08g06260 hypothetical protein FN2887-S Chr8 3413001 3449000 0 0 Deletion 35999 LOC_Os08g07080 terpene synthase, putative, expressed FN2887-S Chr8 8223441 8223444 0 0 Deletion 3 INTERGENIC HET FN2887-S Chr9 12064616 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr9 12075001 12088000 0 0 Deletion 12999 LOC_Os09g20170 expressed protein FN2887-S Chr9 12075001 12088000 0 0 Deletion 12999 LOC_Os09g20284 amine oxidase, flavin-containing, domain containing protein, expressed FN2887-S Chr9 15015165 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr9 22399477 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2887-S Chr9 22496797 22496810 0 0 Deletion 13 INTERGENIC HET FN2887-S Chr9 4095036 4095037 0 0 Deletion 1 upstream_gene_variant HET