FN2888-S Chr1 11100160 11100164 0 0 Deletion 4 downstream_gene_variant HET FN2888-S Chr1 11869720 11869720 0 0 Insertion 63 intergenic_region HET FN2888-S Chr1 14535519 14535519 0 0 Insertion 1 upstream_gene_variant HET FN2888-S Chr1 15836000 G-A 0 0 Single Base Substitution 0 INTRON HET FN2888-S Chr1 15836001 G-A 0 0 Single Base Substitution 0 INTRON HET FN2888-S Chr1 16220855 16220855 0 0 Insertion 1 upstream_gene_variant HET FN2888-S Chr1 1820204 1820207 0 0 Deletion 3 inframe_deletion HET LOC_Os01g04140 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2888-S Chr1 20668205 G-A 0 0 Single Base Substitution 0 INTRON HET FN2888-S Chr1 20668206 G-A 0 0 Single Base Substitution 0 INTRON HET FN2888-S Chr1 21079068 C-A 0 0 Single Base Substitution 0 INTRON HET FN2888-S Chr1 25807246 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2888-S Chr1 27352502 27352502 0 0 Insertion 1 upstream_gene_variant HET FN2888-S Chr1 31772635 31772635 0 0 Insertion 1 intergenic_region HET FN2888-S Chr1 34164390 G-A 0 0 Single Base Substitution 0 INTRON HET FN2888-S Chr1 34932501 34932501 0 0 Insertion 1 upstream_gene_variant HET FN2888-S Chr1 3874915 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72350 amidohydrolase, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72360 expressed protein FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72370 helix-loop-helix DNA-binding domain containing protein, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72380 expressed protein FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72390 NBS type disease resistance protein, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72400 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72410 Leucine Rich Repeat family protein, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72420 C2 domain containing protein, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72430 NADPH quinone oxidoreductase, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72440 hypothetical protein FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72450 DNA binding protein, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72460 NADPH quinone oxidoreductase, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72470 expressed protein FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72480 zinc finger, C3HC4 type domain containing protein, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72490 LRP1, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72500 retrotransposon protein, putative, unclassified, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72510 eukaryotic aspartyl protease domain containing protein, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72520 phosphoesterase family protein, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72530 OsCML31 - Calmodulin-related calcium sensor protein, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72540 OsCML23 - Calmodulin-related calcium sensor protein, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72550 OsCML19 - Calmodulin-related calcium sensor protein, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72560 expressed protein FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72570 expressed protein FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72590 expressed protein FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72600 spotted leaf 11, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72610 glycosyltransferase, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72620 expressed protein FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72630 expressed protein FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72650 RNA recognition motif containing protein, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72660 expressed protein FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72670 expressed protein FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72680 disease resistance protein RPS2, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72690 NAD kinase, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72700 expressed protein FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72710 expressed protein FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72720 expressed protein FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72730 cytochrome P450, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72740 cytochrome P450, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72760 cytochrome P450, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72780 expressed protein FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72790 cyclin-dependent kinase, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72800 signal recognition particle receptor, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72810 secreted glycoprotein, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72820 CRS1/YhbY domain containing protein, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72834 RNA recognition motif containing protein, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72850 GDSL-motif lipase/hydrolase family protein, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72860 MAC/Perforin domain containing protein, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72870 BAS1, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72880 DNA mismatch repair protein Mlh1, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72900 abscisic stress-ripening, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72910 abscisic stress-ripening, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72920 expressed protein FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72930 pentatricopeptide, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72940 phosphatidylserine decarboxylase, putative, expressed FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72950 expressed protein FN2888-S Chr1 41958001 42318000 0 0 Deletion 359999 LOC_Os01g72960 expressed protein FN2888-S Chr1 42119019 42119022 0 0 Deletion 3 downstream_gene_variant HET FN2888-S Chr10 17156069 Chr9 12552917 0 Translocation 0 LOC_Os10g32760 zinc finger family protein, putative, expressed FN2888-S Chr10 3391141 3391143 0 0 Deletion 2 downstream_gene_variant HET FN2888-S Chr10 446581 446581 0 0 Insertion 2 INTERGENIC HET FN2888-S Chr10 4523351 4523351 0 0 Insertion 1 upstream_gene_variant HET FN2888-S Chr10 6815578 6815578 0 0 Insertion 1 upstream_gene_variant HET FN2888-S Chr11 11895096 11895096 0 0 Insertion 1 upstream_gene_variant HET FN2888-S Chr11 12046391 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2888-S Chr11 14230005 Chr7 15472209 0 Translocation 0 LOC_Os07g26780 retrotransposon protein, putative, unclassified, expressed FN2888-S Chr11 14230005 Chr7 15472209 0 Translocation 0 LOC_Os11g24990 retrotransposon protein, putative, unclassified, expressed FN2888-S Chr11 14656656 14656657 0 0 Deletion 1 upstream_gene_variant HET FN2888-S Chr11 15127001 15198000 0 0 Deletion 70999 LOC_Os11g26420 retrotransposon protein, putative, unclassified, expressed FN2888-S Chr11 15127001 15198000 0 0 Deletion 70999 LOC_Os11g26430 retrotransposon, putative, centromere-specific, expressed FN2888-S Chr11 15127001 15198000 0 0 Deletion 70999 LOC_Os11g26440 retrotransposon, putative, centromere-specific, expressed FN2888-S Chr11 15127001 15198000 0 0 Deletion 70999 LOC_Os11g26450 retrotransposon, putative, centromere-specific FN2888-S Chr11 15127001 15198000 0 0 Deletion 70999 LOC_Os11g26460 retrotransposon protein, putative, Ty3-gypsy subclass FN2888-S Chr11 15127001 15198000 0 0 Deletion 70999 LOC_Os11g26470 retrotransposon protein, putative, unclassified, expressed FN2888-S Chr11 15127001 15198000 0 0 Deletion 70999 LOC_Os11g26480 retrotransposon, putative, centromere-specific FN2888-S Chr11 15127001 15198000 0 0 Deletion 70999 LOC_Os11g26490 retrotransposon protein, putative, Ty3-gypsy subclass FN2888-S Chr11 15127001 15198000 0 0 Deletion 70999 LOC_Os11g26500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2888-S Chr11 15127001 15198000 0 0 Deletion 70999 LOC_Os11g26520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2888-S Chr11 15127001 15198000 0 0 Deletion 70999 LOC_Os11g26795 expressed protein FN2888-S Chr11 19842657 Chr1 19348949 0 Translocation 0 FN2888-S Chr11 23887425 23887426 0 0 Deletion 1 frameshift_variant HET LOC_Os11g40060 retrotransposon protein, putative, unclassified, expressed FN2888-S Chr11 25831477 25831477 0 0 Insertion 14 downstream_gene_variant HET FN2888-S Chr11 26729629 26729629 0 0 Insertion 1 upstream_gene_variant HET FN2888-S Chr11 2761387 T-C 0 0 Single Base Substitution 0 INTRON HET FN2888-S Chr11 28591618 28591619 0 0 Deletion 1 upstream_gene_variant HET FN2888-S Chr11 3400143 3400144 0 0 Deletion 1 upstream_gene_variant HET FN2888-S Chr11 4439363 4439367 0 0 Deletion 4 INTRON HOMO FN2888-S Chr11 6207435 6207443 0 0 Deletion 8 upstream_gene_variant HET FN2888-S Chr11 7391556 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2888-S Chr11 8420304 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g14950 ACT domain containing protein, expressed FN2888-S Chr12 10844427 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2888-S Chr12 13719982 13719982 0 0 Insertion 1 upstream_gene_variant HET FN2888-S Chr12 17542627 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2888-S Chr12 25678009 25678015 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os12g41450 F-box domain containing protein, expressed FN2888-S Chr12 9725529 Chr4 10817573 0 Translocation 0 FN2888-S Chr2 12409836 12409836 0 0 Insertion 12 upstream_gene_variant HET FN2888-S Chr2 17160551 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g28980 peptidyl-prolyl isomerase, putative, expressed FN2888-S Chr2 20195535 20195536 0 0 Deletion 1 downstream_gene_variant HET FN2888-S Chr2 21801732 21801734 0 0 Deletion 2 upstream_gene_variant HET FN2888-S Chr2 3423098 3423098 0 0 Insertion 12 upstream_gene_variant HET FN2888-S Chr2 6037237 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2888-S Chr2 6458255 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2888-S Chr2 6894596 6894597 0 0 Deletion 1 frameshift_variant HET LOC_Os02g13010 retrotransposon protein, putative, unclassified, expressed FN2888-S Chr2 9609850 9609850 0 0 Insertion 4 upstream_gene_variant HET FN2888-S Chr3 13392500 13392501 0 0 Deletion 1 downstream_gene_variant HET FN2888-S Chr3 20995661 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2888-S Chr3 2177043 2177044 0 0 Deletion 1 upstream_gene_variant HET FN2888-S Chr3 22843833 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2888-S Chr3 24849938 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2888-S Chr3 29050246 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2888-S Chr3 33122697 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2888-S Chr3 33539425 33539432 0 0 Deletion 7 INTRON HET FN2888-S Chr3 34441956 34441965 0 0 Deletion 9 INTRON HOMO FN2888-S Chr3 6188480 6188481 0 0 Deletion 1 downstream_gene_variant HET FN2888-S Chr3 6692915 6692916 0 0 Deletion 1 intron_variant HET FN2888-S Chr4 10478822 10478822 0 0 Insertion 1 downstream_gene_variant HET FN2888-S Chr4 11145276 11145279 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os04g19990 retrotransposon protein, putative, unclassified, expressed FN2888-S Chr4 12856236 12856271 0 0 Deletion 35 downstream_gene_variant HET FN2888-S Chr4 1937797 1937798 0 0 Deletion 1 downstream_gene_variant HET FN2888-S Chr4 21042414 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g34740 transposon protein, putative, unclassified, expressed FN2888-S Chr4 22703024 22703024 0 0 Insertion 1 upstream_gene_variant HET FN2888-S Chr4 23480747 23480747 0 0 Insertion 2 intergenic_region HET FN2888-S Chr4 23598885 23598885 0 0 Insertion 127 downstream_gene_variant HET FN2888-S Chr4 26826213 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2888-S Chr4 3100936 3100939 0 0 Deletion 3 upstream_gene_variant HET FN2888-S Chr4 32340699 32340782 0 0 Deletion 83 3_prime_UTR_variant HET FN2888-S Chr4 33090825 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2888-S Chr4 9786562 9786563 0 0 Deletion 1 frameshift_variant HET LOC_Os04g17840 retrotransposon protein, putative, unclassified, expressed FN2888-S Chr5 10070127 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2888-S Chr5 13350245 13350245 0 0 Insertion 1 downstream_gene_variant HET FN2888-S Chr5 14965971 Chr4 27007162 0 Translocation 0 FN2888-S Chr5 15436302 15436302 0 0 Insertion 1 upstream_gene_variant HET FN2888-S Chr5 1633003 1633003 0 0 Insertion 1 downstream_gene_variant HET FN2888-S Chr5 17700560 17700561 0 0 Deletion 1 upstream_gene_variant HET FN2888-S Chr5 22608408 22608408 0 0 Insertion 8 upstream_gene_variant HET FN2888-S Chr5 29701218 29701219 0 0 Deletion 1 upstream_gene_variant HET FN2888-S Chr5 3024186 3024186 0 0 Insertion 1 upstream_gene_variant HET FN2888-S Chr6 11262527 11262531 0 0 Deletion 4 INTERGENIC HOMO FN2888-S Chr6 13982283 13982283 0 0 Insertion 1 upstream_gene_variant HET FN2888-S Chr6 17884405 17884405 0 0 Insertion 1 downstream_gene_variant HET FN2888-S Chr6 20321739 20321805 0 0 Deletion 66 upstream_gene_variant HET FN2888-S Chr6 23054790 C-T 0 0 Single Base Substitution 0 INTRON HET FN2888-S Chr6 27600432 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2888-S Chr6 28441103 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g46860 expressed protein FN2888-S Chr6 28874354 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2888-S Chr6 29159055 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2888-S Chr6 29433415 29433416 0 0 Deletion 1 INTERGENIC HOMO FN2888-S Chr7 10608673 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2888-S Chr7 16460600 16460601 0 0 Deletion 1 downstream_gene_variant HET FN2888-S Chr7 17430499 17430499 0 0 Insertion 3 upstream_gene_variant HET FN2888-S Chr7 18198663 18198663 0 0 Insertion 1 upstream_gene_variant HET FN2888-S Chr7 2170868 2170868 0 0 Insertion 1 upstream_gene_variant HET FN2888-S Chr7 2322893 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2888-S Chr7 23433878 23433882 0 0 Deletion 4 5_prime_UTR_variant HET FN2888-S Chr7 24941088 24941088 0 0 Insertion 1 upstream_gene_variant HET FN2888-S Chr7 4655001 4743000 0 0 Deletion 87999 LOC_Os07g08960 RNA recognition motif containing protein, expressed FN2888-S Chr7 4655001 4743000 0 0 Deletion 87999 LOC_Os07g08970 uncharacterized protein ycf45, putative, expressed FN2888-S Chr7 4655001 4743000 0 0 Deletion 87999 LOC_Os07g08990 expressed protein FN2888-S Chr7 4655001 4743000 0 0 Deletion 87999 LOC_Os07g09000 WD domain, G-beta repeat domain containing protein, expressed FN2888-S Chr7 4655001 4743000 0 0 Deletion 87999 LOC_Os07g09010 nodulin, putative, expressed FN2888-S Chr7 4655001 4743000 0 0 Deletion 87999 LOC_Os07g09020 argonaute, putative, expressed FN2888-S Chr7 4655001 4743000 0 0 Deletion 87999 LOC_Os07g09030 expressed protein FN2888-S Chr7 4655001 4743000 0 0 Deletion 87999 LOC_Os07g09040 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed FN2888-S Chr7 4655001 4743000 0 0 Deletion 87999 LOC_Os07g09050 exostosin family protein, putative, expressed FN2888-S Chr7 4655001 4743000 0 0 Deletion 87999 LOC_Os07g09060 aldehyde dehydrogenase, putative, expressed FN2888-S Chr7 4655001 4743000 0 0 Deletion 87999 LOC_Os07g09250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2888-S Chr8 10038280 10038280 0 0 Insertion 1 upstream_gene_variant HET FN2888-S Chr8 11114777 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2888-S Chr8 13660826 13660827 0 0 Deletion 1 upstream_gene_variant HET FN2888-S Chr8 18059509 18059529 0 0 Deletion 20 upstream_gene_variant HET FN2888-S Chr8 24638265 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2888-S Chr8 3402809 3402810 0 0 Deletion 1 downstream_gene_variant HET FN2888-S Chr8 3804896 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2888-S Chr8 4767461 4767463 0 0 Deletion 2 INTRON HET FN2888-S Chr8 6760515 6760516 0 0 Deletion 1 downstream_gene_variant HET FN2888-S Chr9 12799706 12837283 0 0 Inversion 37577 FN2888-S Chr9 21568722 21568731 0 0 Deletion 9 5_prime_UTR_variant HET FN2888-S Chr9 2759980 2759981 0 0 Deletion 1 intergenic_region HET FN2888-S Chr9 3598202 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os09g07300 BIG, putative, expressed FN2888-S Chr9 4861332 4861333 0 0 Deletion 1 frameshift_variant HET LOC_Os09g09090 retrotransposon protein, putative, Ty3-gypsy subclass FN2888-S Chr9 5171889 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2888-S Chr9 7835081 7835089 0 0 Deletion 8 upstream_gene_variant HET