FN2889-S Chr1 13722666 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2889-S Chr1 15005847 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2889-S Chr1 15240528 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2889-S Chr1 18968292 C-T 0 0 Single Base Substitution 0 INTRON HET FN2889-S Chr1 19586970 19586971 0 0 Deletion 1 upstream_gene_variant HET FN2889-S Chr1 2160617 2160618 0 0 Deletion 1 INTERGENIC HET FN2889-S Chr1 22565374 22565374 0 0 Insertion 1 upstream_gene_variant HET FN2889-S Chr1 2338688 2338689 0 0 Deletion 1 intron_variant HET FN2889-S Chr1 25807251 25807252 0 0 Deletion 1 downstream_gene_variant HET FN2889-S Chr1 26181565 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2889-S Chr1 34363339 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2889-S Chr1 36569851 36569852 0 0 Deletion 1 downstream_gene_variant HET FN2889-S Chr1 37753406 37753406 0 0 Insertion 6 upstream_gene_variant HET FN2889-S Chr10 18123971 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2889-S Chr10 18123975 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2889-S Chr10 20502589 20502590 0 0 Deletion 1 upstream_gene_variant HET FN2889-S Chr10 3212841 3212842 0 0 Deletion 1 upstream_gene_variant HET FN2889-S Chr10 5984045 Chr9 564996 0 Translocation 0 LOC_Os09g01820 retrotransposon protein, putative, Ty3-gypsy subclass FN2889-S Chr10 5984045 Chr9 564996 0 Translocation 0 LOC_Os10g10810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2889-S Chr10 6921967 6921967 0 0 Insertion 1 downstream_gene_variant HET FN2889-S Chr11 1121641 1121641 0 0 Insertion 1 downstream_gene_variant HET FN2889-S Chr11 14937244 14937246 0 0 Deletion 2 INTERGENIC HET FN2889-S Chr11 15053924 15053924 0 0 Insertion 7 downstream_gene_variant HET FN2889-S Chr11 22131702 Chr6 12651485 0 Translocation 0 LOC_Os06g21890 basic proline-rich protein precursor, putative, expressed FN2889-S Chr11 23651791 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g39710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2889-S Chr11 23833692 23833745 0 0 Deletion 53 intergenic_region HET FN2889-S Chr11 27611690 27611690 0 0 Insertion 2 upstream_gene_variant HET FN2889-S Chr12 11184206 Chr6 12783458 0 Translocation 0 FN2889-S Chr12 11184208 Chr6 12783920 0 Translocation 0 FN2889-S Chr12 12290997 12290998 0 0 Deletion 1 frameshift_variant HET LOC_Os12g21830 retrotransposon protein, putative, Ty1-copia subclass FN2889-S Chr12 18795657 18795658 0 0 Deletion 1 upstream_gene_variant HET FN2889-S Chr12 6176575 6176576 0 0 Deletion 1 intron_variant HET FN2889-S Chr12 8221191 Chr4 3485806 0 Translocation 0 LOC_Os12g14420 retrotransposon protein, putative, Ty3-gypsy subclass FN2889-S Chr2 15625297 15625382 0 0 Deletion 85 intron_variant HET FN2889-S Chr2 18426070 18426071 0 0 Deletion 1 downstream_gene_variant HET FN2889-S Chr2 21803328 21803329 0 0 Deletion 1 upstream_gene_variant HET FN2889-S Chr2 3959736 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2889-S Chr2 6193169 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g11940 sterol glucosyltransferase, putative, expressed FN2889-S Chr2 6366855 C-A 0 0 Single Base Substitution 0 INTRON HET FN2889-S Chr2 9355000 9355065 0 0 Deletion 65 frameshift_variant HET LOC_Os02g16410 retrotransposon protein, putative, unclassified FN2889-S Chr3 14810687 14810693 0 0 Deletion 6 downstream_gene_variant HET FN2889-S Chr3 1533890 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2889-S Chr3 16144791 16144791 0 0 Insertion 1 intergenic_region HET FN2889-S Chr3 20862287 20862287 0 0 Insertion 41 frameshift_variant HET LOC_Os03g37620 expressed protein FN2889-S Chr3 24138400 24138400 0 0 Insertion 1 frameshift_variant HET LOC_Os03g43290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2889-S Chr3 25665986 25665986 0 0 Insertion 100 downstream_gene_variant HET FN2889-S Chr3 25839186 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2889-S Chr3 30819947 30819947 0 0 Insertion 2 INTRON HET FN2889-S Chr3 3953299 3953299 0 0 Insertion 42 disruptive_inframe_insertion HET LOC_Os03g07780 transposon protein, putative, unclassified, expressed FN2889-S Chr3 614294 614296 0 0 Deletion 2 UTR_3_PRIME HET FN2889-S Chr3 6277319 6277327 0 0 Deletion 8 upstream_gene_variant HET FN2889-S Chr3 6550189 6550192 0 0 Deletion 3 upstream_gene_variant HET FN2889-S Chr3 7389862 7389868 0 0 Deletion 6 upstream_gene_variant HET FN2889-S Chr4 16735313 16735315 0 0 Deletion 2 INTERGENIC HET FN2889-S Chr4 19107299 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN2889-S Chr4 22546947 Chr1 7916899 0 Translocation 0 FN2889-S Chr4 24661177 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2889-S Chr4 27771422 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2889-S Chr4 3074877 3074878 0 0 Deletion 1 INTERGENIC HOMO FN2889-S Chr4 31040897 31114415 0 0 Inversion 73518 LOC_Os04g52240 terpene synthase, putative, expressed FN2889-S Chr4 31040912 31118251 0 0 Inversion 77339 LOC_Os04g52240 terpene synthase, putative, expressed FN2889-S Chr4 31156737 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2889-S Chr4 31156738 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2889-S Chr4 34328568 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2889-S Chr4 8423163 8423163 0 0 Insertion 4 INTRON HET FN2889-S Chr4 8642874 8642874 0 0 Insertion 62 upstream_gene_variant HET FN2889-S Chr4 8662915 8662916 0 0 Deletion 1 downstream_gene_variant HET FN2889-S Chr5 1943182 1943182 0 0 Insertion 1 upstream_gene_variant HET FN2889-S Chr5 19782453 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g33630 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed FN2889-S Chr5 23568559 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g40110 retrotransposon protein, putative, unclassified, expressed FN2889-S Chr5 24917968 24917969 0 0 Deletion 1 upstream_gene_variant HET FN2889-S Chr5 732481 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2889-S Chr5 9917718 9917718 0 0 Insertion 1 upstream_gene_variant HET FN2889-S Chr6 1097476 1097477 0 0 Deletion 1 upstream_gene_variant HET FN2889-S Chr6 11423230 11423230 0 0 Insertion 2 upstream_gene_variant HET FN2889-S Chr6 14394267 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g24550 expressed protein FN2889-S Chr6 14638451 14638453 0 0 Deletion 2 downstream_gene_variant HET FN2889-S Chr6 17200694 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2889-S Chr6 18190270 Chr3 8985228 0 Translocation 0 FN2889-S Chr6 21937367 21937427 0 0 Deletion 60 downstream_gene_variant HET FN2889-S Chr7 12144892 12144893 0 0 Deletion 1 intergenic_region HET FN2889-S Chr7 14052385 14052386 0 0 Deletion 1 intron_variant HET FN2889-S Chr7 16558856 16558946 0 0 Deletion 90 upstream_gene_variant HET FN2889-S Chr7 1711869 Chr1 30338128 0 Translocation 0 FN2889-S Chr7 22437384 22437385 0 0 Deletion 1 frameshift_variant HET LOC_Os07g37470 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2889-S Chr7 24922444 24922448 0 0 Deletion 4 INTERGENIC HET FN2889-S Chr7 7930707 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2889-S Chr7 8577566 8577566 0 0 Insertion 1 upstream_gene_variant HET FN2889-S Chr8 11766886 11766887 0 0 Deletion 1 downstream_gene_variant HET FN2889-S Chr8 12234981 12234981 0 0 Insertion 50 upstream_gene_variant HET FN2889-S Chr8 17023936 17023936 0 0 Insertion 1 upstream_gene_variant HET FN2889-S Chr8 17023937 17023937 0 0 Insertion 1 upstream_gene_variant HET FN2889-S Chr8 26611591 26611607 0 0 Deletion 16 downstream_gene_variant HET FN2889-S Chr8 2710572 2710573 0 0 Deletion 1 upstream_gene_variant HET FN2889-S Chr8 3311006 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2889-S Chr8 3805378 3805379 0 0 Deletion 1 downstream_gene_variant HET FN2889-S Chr8 5035168 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2889-S Chr8 7866161 7866205 0 0 Deletion 44 upstream_gene_variant HET FN2889-S Chr8 8733100 8733100 0 0 Insertion 1 intron_variant HET FN2889-S Chr9 14321308 14321312 0 0 Deletion 4 frameshift_variant HET LOC_Os09g24090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2889-S Chr9 15757827 C-A 0 0 Single Base Substitution 0 INTRON HET FN2889-S Chr9 16438837 16438839 0 0 Deletion 2 INTERGENIC HET FN2889-S Chr9 17555982 17555982 0 0 Insertion 5 upstream_gene_variant HET FN2889-S Chr9 2568185 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2889-S Chr9 3419346 3419350 0 0 Deletion 4 INTERGENIC HOMO FN2889-S Chr9 4656852 4656853 0 0 Deletion 1 frameshift_variant HET LOC_Os09g08830 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2889-S Chr9 4810717 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2889-S Chr9 5717969 5717970 0 0 Deletion 1 upstream_gene_variant HET FN2889-S Chr9 5913166 5913170 0 0 Deletion 4 INTERGENIC HOMO FN2889-S Chr9 8498045 8498045 0 0 Insertion 1 frameshift_variant HET LOC_Os09g14390 transposon protein, putative, CACTA, En/Spm sub-class, expressed