FN2890-S Chr1 10432494 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g18530 expressed protein FN2890-S Chr1 15748161 15748163 0 0 Deletion 2 INTRON HET FN2890-S Chr1 16891207 16891207 0 0 Insertion 1 downstream_gene_variant HET FN2890-S Chr1 31774181 32529690 0 0 Inversion 755509 FN2890-S Chr1 32534070 32534071 0 0 Deletion 1 INTERGENIC HOMO FN2890-S Chr1 34173335 34173337 0 0 Deletion 2 downstream_gene_variant HET FN2890-S Chr1 35504355 G-C 0 0 Single Base Substitution 0 INTRON HOMO FN2890-S Chr1 41330845 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr1 5336753 5336782 0 0 Deletion 29 frameshift_variant HET LOC_Os01g10160 latency associated nuclear antigen, putative, expressed FN2890-S Chr1 5943189 5943189 0 0 Insertion 33 upstream_gene_variant HET FN2890-S Chr1 7884895 7884895 0 0 Insertion 63 upstream_gene_variant HET FN2890-S Chr10 1134019 1134029 0 0 Deletion 10 INTERGENIC HOMO FN2890-S Chr10 12266720 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2890-S Chr10 13370893 Chr3 4087374 0 Translocation 0 LOC_Os03g07994 expressed protein FN2890-S Chr10 1402197 1402197 0 0 Insertion 1 upstream_gene_variant HET FN2890-S Chr10 15800901 Chr4 13170994 0 Translocation 0 FN2890-S Chr10 21053035 21053044 0 0 Deletion 9 INTERGENIC HOMO FN2890-S Chr10 21562550 21562556 0 0 Deletion 6 CODON_DELETION HOMO LOC_Os10g40250 expressed protein FN2890-S Chr10 22644010 Chr8 19749990 0 Translocation 0 FN2890-S Chr10 3555803 3555804 0 0 Deletion 1 upstream_gene_variant HET FN2890-S Chr11 10632272 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2890-S Chr11 11988323 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2890-S Chr11 19069264 19069266 0 0 Deletion 2 UTR_5_PRIME HET FN2890-S Chr11 1946980 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr11 20913259 20913261 0 0 Deletion 2 upstream_gene_variant HET FN2890-S Chr11 4214491 4214491 0 0 Insertion 11 upstream_gene_variant HET FN2890-S Chr12 12005109 12005195 0 0 Deletion 86 intergenic_region HET FN2890-S Chr12 9649695 9649724 0 0 Deletion 29 frameshift_variant HET LOC_Os12g16830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2890-S Chr2 13636210 13636252 0 0 Deletion 42 intergenic_region HET FN2890-S Chr2 16521730 16521730 0 0 Insertion 82 downstream_gene_variant HET FN2890-S Chr2 19275421 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr2 19383239 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr2 222955 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr2 25293344 25293344 0 0 Insertion 1 upstream_gene_variant HET FN2890-S Chr2 27283855 27283857 0 0 Deletion 2 downstream_gene_variant HET FN2890-S Chr2 7061309 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr3 11057646 A-T 0 0 Single Base Substitution 0 INTRON HET FN2890-S Chr3 13048134 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr3 13503101 13503105 0 0 Deletion 4 upstream_gene_variant HET FN2890-S Chr3 14493320 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr3 20998312 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr3 22869279 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr3 26251958 26251958 0 0 Insertion 1 upstream_gene_variant HET FN2890-S Chr3 28879368 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2890-S Chr3 30981508 T-G 0 0 Single Base Substitution 0 INTRON HET FN2890-S Chr3 3405240 4126119 0 0 Inversion 720879 FN2890-S Chr3 3405247 4126135 0 0 Inversion 720888 FN2890-S Chr3 34562757 34562849 0 0 Deletion 92 upstream_gene_variant HET FN2890-S Chr3 4376236 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr4 10422845 10422845 0 0 Insertion 1 downstream_gene_variant HET FN2890-S Chr4 12082608 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr4 13325012 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2890-S Chr4 1462452 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g03410 retrotransposon protein, putative, unclassified, expressed FN2890-S Chr4 17428572 G-A 0 0 Single Base Substitution 0 INTRON HET FN2890-S Chr4 17599278 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr4 19529463 19529463 0 0 Insertion 1 intergenic_region HET FN2890-S Chr4 20747361 20747361 0 0 Insertion 1 upstream_gene_variant HET FN2890-S Chr4 22336180 22336183 0 0 Deletion 3 CODON_DELETION HOMO LOC_Os04g37520 extracellular ligand-gated ion channel, putative, expressed FN2890-S Chr4 22404955 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2890-S Chr4 2332773 2332773 0 0 Insertion 1 upstream_gene_variant HET FN2890-S Chr4 23338071 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr4 27312022 27312022 0 0 Insertion 4 intron_variant HET FN2890-S Chr4 27491433 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr4 30156 30175 0 0 Deletion 19 frameshift_variant HET LOC_Os04g01030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2890-S Chr4 30357264 30357265 0 0 Deletion 1 upstream_gene_variant HET FN2890-S Chr4 434087 434087 0 0 Insertion 95 downstream_gene_variant HET FN2890-S Chr4 8576407 8576425 0 0 Deletion 18 upstream_gene_variant HET FN2890-S Chr4 8847892 Chr2 15425884 0 Translocation 0 LOC_Os02g26270 retrotransposon protein, putative, unclassified, expressed FN2890-S Chr4 8847892 Chr2 15425884 0 Translocation 0 LOC_Os04g16280 retrotransposon protein, putative, unclassified, expressed FN2890-S Chr4 9537826 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2890-S Chr5 10418057 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2890-S Chr5 11620300 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr5 11689606 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2890-S Chr5 4598951 4598956 0 0 Deletion 5 INTERGENIC HOMO FN2890-S Chr5 8820599 8820599 0 0 Insertion 1 upstream_gene_variant HET FN2890-S Chr5 9828976 9828986 0 0 Deletion 10 FRAME_SHIFT HET LOC_Os05g17160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2890-S Chr6 11144460 11144460 0 0 Insertion 25 frameshift_variant&stop_gained HET LOC_Os06g19570 expressed protein FN2890-S Chr6 12012081 12012082 0 0 Deletion 1 upstream_gene_variant HET FN2890-S Chr6 14038562 14038563 0 0 Deletion 1 downstream_gene_variant HET FN2890-S Chr6 15003075 15003077 0 0 Deletion 2 INTRON HET FN2890-S Chr6 15448847 15448849 0 0 Deletion 2 intergenic_region HET FN2890-S Chr6 16515728 T-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os06g28980 retrotransposon protein, putative, unclassified, expressed FN2890-S Chr6 2100283 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2890-S Chr6 24473281 24473286 0 0 Deletion 5 upstream_gene_variant HET FN2890-S Chr6 25556801 25556801 0 0 Insertion 2 INTERGENIC HET FN2890-S Chr6 29334764 29334774 0 0 Deletion 10 upstream_gene_variant HET FN2890-S Chr6 29408785 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2890-S Chr6 8251722 8251722 0 0 Insertion 130 frameshift_variant HET LOC_Os06g14670 ODORANT1, putative, expressed FN2890-S Chr7 11229534 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os07g18970 retrotransposon protein, putative, unclassified, expressed FN2890-S Chr7 22189053 22189053 0 0 Insertion 2 UTR_5_PRIME HET FN2890-S Chr7 28420091 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr7 7576260 7576278 0 0 Deletion 18 INTERGENIC HOMO FN2890-S Chr8 11140963 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g18170 expressed protein FN2890-S Chr8 15934961 Chr7 6243021 0 Translocation 0 FN2890-S Chr8 15962583 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2890-S Chr8 2596687 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2890-S Chr8 27723080 27723080 0 0 Insertion 42 upstream_gene_variant HET FN2890-S Chr8 28032789 28032789 0 0 Insertion 1 downstream_gene_variant HET FN2890-S Chr8 6447952 6447953 0 0 Deletion 1 upstream_gene_variant HET FN2890-S Chr9 1246874 1246874 0 0 Insertion 1 upstream_gene_variant HET FN2890-S Chr9 14183350 14183353 0 0 Deletion 3 upstream_gene_variant HET FN2890-S Chr9 15847898 15847898 0 0 Insertion 4 upstream_gene_variant HET FN2890-S Chr9 2934881 2934882 0 0 Deletion 1 upstream_gene_variant HET FN2890-S Chr9 4913846 4913847 0 0 Deletion 1 upstream_gene_variant HET FN2890-S Chr9 6757952 6757954 0 0 Deletion 2 INTERGENIC HET FN2890-S Chr9 7260586 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2890-S Chr9 7323623 Chr6 14828901 0 Translocation 0 FN2890-S Chr9 7888570 7888576 0 0 Deletion 6 intron_variant HET