FN2891-S Chr1 13967298 13967299 0 0 Deletion 1 intron_variant HET FN2891-S Chr1 17004384 17004394 0 0 Deletion 10 INTERGENIC HET FN2891-S Chr1 19945453 19945453 0 0 Insertion 1 upstream_gene_variant HET FN2891-S Chr1 20515110 20515110 0 0 Insertion 1 downstream_gene_variant HET FN2891-S Chr1 20580547 20580547 0 0 Insertion 82 downstream_gene_variant HET FN2891-S Chr1 22313842 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2891-S Chr1 22788535 22788535 0 0 Insertion 26 upstream_gene_variant HET FN2891-S Chr1 25823676 25823677 0 0 Deletion 1 downstream_gene_variant HET FN2891-S Chr1 29099985 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2891-S Chr1 29210117 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2891-S Chr1 5092598 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2891-S Chr10 13245831 13245831 0 0 Insertion 2 INTRON HET FN2891-S Chr10 14701852 14701852 0 0 Insertion 3 upstream_gene_variant HET FN2891-S Chr10 21941471 21941473 0 0 Deletion 2 INTERGENIC HET FN2891-S Chr10 3923863 3923863 0 0 Insertion 1 downstream_gene_variant HET FN2891-S Chr11 13352660 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2891-S Chr11 22238932 22649100 0 0 Inversion 410168 FN2891-S Chr11 22239280 22686831 0 0 Inversion 447551 FN2891-S Chr11 22403007 22403007 0 0 Insertion 2 downstream_gene_variant HET FN2891-S Chr11 27044991 27044991 0 0 Insertion 1 intron_variant HET FN2891-S Chr11 4462553 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2891-S Chr11 9511585 9511589 0 0 Deletion 4 INTERGENIC HOMO FN2891-S Chr12 12117870 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2891-S Chr12 12869292 12869292 0 0 Insertion 1 upstream_gene_variant HET FN2891-S Chr12 12919640 12919643 0 0 Deletion 3 INTERGENIC HOMO FN2891-S Chr12 14140001 14162000 0 0 Deletion 21999 LOC_Os12g24690 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2891-S Chr12 14140001 14162000 0 0 Deletion 21999 LOC_Os12g24700 retrotransposon protein, putative, Ty1-copia subclass FN2891-S Chr12 15107656 15107656 0 0 Insertion 2 upstream_gene_variant HET FN2891-S Chr12 2057264 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2891-S Chr12 21731437 21784966 0 0 Inversion 53529 FN2891-S Chr12 21731446 21784978 0 0 Inversion 53532 FN2891-S Chr12 21766548 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2891-S Chr12 3105428 Chr3 25259158 0 Translocation 0 FN2891-S Chr12 3291165 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2891-S Chr12 8395674 8395680 0 0 Deletion 6 INTERGENIC HET FN2891-S Chr12 9089519 9089526 0 0 Deletion 7 FRAME_SHIFT HOMO LOC_Os12g15950 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2891-S Chr2 16750475 16750481 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os02g28340 transferase family protein, putative, expressed FN2891-S Chr2 22307213 22307220 0 0 Deletion 7 INTERGENIC HOMO FN2891-S Chr2 23369682 G-A 0 0 Single Base Substitution 0 INTRON HET FN2891-S Chr2 29037884 29831980 0 0 Inversion 794096 FN2891-S Chr2 32319213 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2891-S Chr2 34820028 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2891-S Chr2 4228468 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2891-S Chr3 12636205 12636205 0 0 Insertion 8 upstream_gene_variant HET FN2891-S Chr3 16642693 16642693 0 0 Insertion 4 upstream_gene_variant HET FN2891-S Chr3 20462487 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2891-S Chr3 23141900 23141900 0 0 Insertion 6 upstream_gene_variant HET FN2891-S Chr3 24819508 Chr1 2790235 0 Translocation 0 LOC_Os01g05820 gamma-glutamyltranspeptidase 1 precursor, putative, expressed FN2891-S Chr3 2894085 2894086 0 0 Deletion 1 downstream_gene_variant HET FN2891-S Chr3 30128001 30148000 0 0 Deletion 19999 LOC_Os03g52510 retrotransposon protein, putative, unclassified, expressed FN2891-S Chr3 30128001 30148000 0 0 Deletion 19999 LOC_Os03g52520 retrotransposon protein, putative, unclassified, expressed FN2891-S Chr3 30128001 30148000 0 0 Deletion 19999 LOC_Os03g52530 retrotransposon protein, putative, Ty3-gypsy subclass FN2891-S Chr3 30128001 30148000 0 0 Deletion 19999 LOC_Os03g52540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2891-S Chr3 30128001 30148000 0 0 Deletion 19999 LOC_Os03g52550 retrotransposon protein, putative, unclassified, expressed FN2891-S Chr3 5194385 5194399 0 0 Deletion 14 intergenic_region HET FN2891-S Chr4 1304862 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2891-S Chr4 13440818 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2891-S Chr4 2560158 2560158 0 0 Insertion 1 upstream_gene_variant HET FN2891-S Chr4 2571072 2571073 0 0 Deletion 1 frameshift_variant HET LOC_Os04g05160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2891-S Chr4 2863397 2863412 0 0 Deletion 15 intergenic_region HET FN2891-S Chr4 30686209 30770987 0 0 Inversion 84778 LOC_Os04g51786 containing DUF163, putative, expressed FN2891-S Chr4 30686220 30770996 0 0 Inversion 84776 LOC_Os04g51786 containing DUF163, putative, expressed FN2891-S Chr4 6530001 6548000 0 0 Deletion 17999 LOC_Os04g11930 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2891-S Chr4 6735035 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2891-S Chr4 7333672 7333680 0 0 Deletion 8 FRAME_SHIFT HET LOC_Os04g13240 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2891-S Chr4 8107248 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2891-S Chr5 10874574 10874575 0 0 Deletion 1 INTERGENIC HET FN2891-S Chr5 11493835 11493835 0 0 Insertion 7 upstream_gene_variant HET FN2891-S Chr5 11965739 11965739 0 0 Insertion 4 downstream_gene_variant HET FN2891-S Chr5 13122448 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2891-S Chr5 15928692 15928711 0 0 Deletion 19 upstream_gene_variant HET FN2891-S Chr5 23534059 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2891-S Chr5 25414028 25414029 0 0 Deletion 1 upstream_gene_variant HET FN2891-S Chr5 29004962 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g50600 OsSCP31 - Putative Serine Carboxypeptidase homologue, expressed FN2891-S Chr5 7663366 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2891-S Chr5 9896915 9896916 0 0 Deletion 1 downstream_gene_variant HET FN2891-S Chr6 10246262 10246263 0 0 Deletion 1 upstream_gene_variant HET FN2891-S Chr6 16127347 16127348 0 0 Deletion 1 frameshift_variant HET LOC_Os06g28350 transposon protein, putative, CACTA, En/Spm sub-class FN2891-S Chr6 20074114 20074114 0 0 Insertion 44 upstream_gene_variant HET FN2891-S Chr6 24646001 24661000 0 0 Deletion 14999 LOC_Os06g41200 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2891-S Chr6 24646001 24661000 0 0 Deletion 14999 LOC_Os06g42340 hypothetical protein FN2891-S Chr6 2502188 2502190 0 0 Deletion 2 INTRON HOMO FN2891-S Chr6 26540266 26540274 0 0 Deletion 8 INTERGENIC HOMO FN2891-S Chr6 8460545 8460546 0 0 Deletion 1 upstream_gene_variant HET FN2891-S Chr7 11202939 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2891-S Chr7 2764256 2764258 0 0 Deletion 2 INTERGENIC HET FN2891-S Chr7 28025231 28025233 0 0 Deletion 2 upstream_gene_variant HET FN2891-S Chr7 8593001 8614000 0 0 Deletion 20999 LOC_Os07g14990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2891-S Chr7 8593001 8614000 0 0 Deletion 20999 LOC_Os07g15000 expressed protein FN2891-S Chr7 8593001 8614000 0 0 Deletion 20999 LOC_Os07g15010 hypothetical protein FN2891-S Chr7 8593001 8614000 0 0 Deletion 20999 LOC_Os07g15020 expressed protein FN2891-S Chr7 9235565 9235570 0 0 Deletion 5 INTRON HOMO FN2891-S Chr7 9799179 9799179 0 0 Insertion 2 upstream_gene_variant HET FN2891-S Chr8 18992263 18992264 0 0 Deletion 1 INTERGENIC HET FN2891-S Chr8 19623274 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2891-S Chr8 26466001 26481000 0 0 Deletion 14999 LOC_Os08g43120 Plant PDR ABC transporter associated domain containing protein, expressed FN2891-S Chr8 6964862 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2891-S Chr8 7279811 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g12350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2891-S Chr8 9576001 9594000 0 0 Deletion 17999 LOC_Os08g15860 expressed protein FN2891-S Chr9 10345091 10345094 0 0 Deletion 3 INTERGENIC HOMO FN2891-S Chr9 11027001 11051000 0 0 Deletion 23999 LOC_Os09g18020 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN2891-S Chr9 11027001 11051000 0 0 Deletion 23999 LOC_Os09g18070 conserved hypothetical protein FN2891-S Chr9 1238183 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN2891-S Chr9 18478348 18478348 0 0 Insertion 1 upstream_gene_variant HET FN2891-S Chr9 20117306 20547692 0 0 Inversion 430386 FN2891-S Chr9 20117306 20547693 0 0 Inversion 430387 FN2891-S Chr9 7769601 7769601 0 0 Insertion 2 INTERGENIC HOMO FN2891-S Chr9 9170001 9190000 0 0 Deletion 19999 LOC_Os09g15130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2891-S Chr9 9170001 9190000 0 0 Deletion 19999 LOC_Os09g15140 retrotransposon protein, putative, unclassified, expressed FN2891-S Chr9 9170001 9190000 0 0 Deletion 19999 LOC_Os09g16290 ABC-2 type transporter, putative, expressed