FN2892-S Chr1 34131811 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2892-S Chr1 7505780 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2892-S Chr10 1926718 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g04140 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2892-S Chr10 22797520 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2892-S Chr10 7449569 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2892-S Chr11 11210416 11210426 0 0 Deletion 10 INTERGENIC HOMO FN2892-S Chr11 18279706 18279715 0 0 Deletion 9 intergenic_region HET FN2892-S Chr11 21663765 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2892-S Chr11 248094 248096 0 0 Deletion 2 INTRON HET FN2892-S Chr11 5536240 5536240 0 0 Insertion 91 upstream_gene_variant HET FN2892-S Chr11 8444248 G-A 0 0 Single Base Substitution 0 INTRON HET FN2892-S Chr12 11024914 11024915 0 0 Deletion 1 upstream_gene_variant HET FN2892-S Chr12 12963247 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2892-S Chr12 13243779 13243780 0 0 Deletion 1 upstream_gene_variant HET FN2892-S Chr12 15017101 15017104 0 0 Deletion 3 INTERGENIC HET FN2892-S Chr12 15179537 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2892-S Chr12 19199763 19199765 0 0 Deletion 2 UTR_5_PRIME HET FN2892-S Chr12 24301201 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2892-S Chr12 26172611 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2892-S Chr12 6955435 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2892-S Chr12 8228545 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2892-S Chr2 30341645 30341645 0 0 Insertion 50 downstream_gene_variant HET FN2892-S Chr2 3875396 3875399 0 0 Deletion 3 INTERGENIC HET FN2892-S Chr2 5296153 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2892-S Chr3 18824667 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2892-S Chr3 21497829 21497849 0 0 Deletion 20 INTERGENIC HOMO FN2892-S Chr3 34461413 35119989 0 0 Inversion 658576 LOC_Os03g61950 kelch motif family protein, putative, expressed FN2892-S Chr3 34461423 35119997 0 0 Inversion 658574 LOC_Os03g61950 kelch motif family protein, putative, expressed FN2892-S Chr3 7393281 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g13670 retrotransposon protein, putative, unclassified, expressed FN2892-S Chr3 8055450 8055465 0 0 Deletion 15 upstream_gene_variant HET FN2892-S Chr4 10720330 10720331 0 0 Deletion 1 frameshift_variant HET LOC_Os04g19270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2892-S Chr4 15403511 15403516 0 0 Deletion 5 FRAME_SHIFT HOMO LOC_Os04g26420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2892-S Chr4 22733580 22733580 0 0 Insertion 1 upstream_gene_variant HET FN2892-S Chr4 25766359 Chr2 4240113 0 Translocation 0 FN2892-S Chr4 26317482 26317496 0 0 Deletion 14 INTERGENIC HET FN2892-S Chr5 12185490 12185492 0 0 Deletion 2 FRAME_SHIFT HOMO LOC_Os05g20760 retrotransposon protein, putative, unclassified FN2892-S Chr5 2327734 2327737 0 0 Deletion 3 UTR_3_PRIME HOMO FN2892-S Chr5 24304180 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g41510 SH2 motif, putative, expressed FN2892-S Chr5 29156763 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g50830 protein kinase family protein, putative, expressed FN2892-S Chr5 29526667 29526683 0 0 Deletion 16 FRAME_SHIFT HET LOC_Os05g51490 SIT4 phosphatase-associated protein domain containing protein, expressed FN2892-S Chr5 29935579 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2892-S Chr5 6298731 6298734 0 0 Deletion 3 INTERGENIC HOMO FN2892-S Chr6 10988813 10988813 0 0 Insertion 1 upstream_gene_variant HET FN2892-S Chr6 14113135 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g24120 retrotransposon protein, putative, unclassified FN2892-S Chr6 20664411 20664417 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os06g35460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2892-S Chr6 22937871 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2892-S Chr6 29371273 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2892-S Chr6 3334729 3334730 0 0 Deletion 1 INTERGENIC HOMO FN2892-S Chr6 9599413 9599417 0 0 Deletion 4 INTRON HOMO FN2892-S Chr7 10545638 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g17830 retrotransposon protein, putative, unclassified, expressed FN2892-S Chr7 20189996 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2892-S Chr7 21988201 21988214 0 0 Deletion 13 INTERGENIC HOMO FN2892-S Chr7 26670550 26670550 0 0 Insertion 2 INTERGENIC HET FN2892-S Chr7 4280190 4280190 0 0 Insertion 1 upstream_gene_variant HET FN2892-S Chr7 7890378 8472148 0 0 Inversion 581770 FN2892-S Chr7 7890402 Chr6 21258710 0 Translocation 0 LOC_Os06g36270 receptor-like protein kinase 5 precursor, putative, expressed FN2892-S Chr7 8472158 Chr6 21258132 0 Translocation 0 FN2892-S Chr8 10447295 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2892-S Chr8 12304307 12304310 0 0 Deletion 3 upstream_gene_variant HET FN2892-S Chr8 13853042 13853042 0 0 Insertion 3 downstream_gene_variant HET FN2892-S Chr8 152579 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g01220 harpin-induced protein 1 domain containing protein, expressed FN2892-S Chr8 2048849 Chr1 292785 0 Translocation 0 FN2892-S Chr8 2049849 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2892-S Chr8 23848876 23848882 0 0 Deletion 6 INTERGENIC HET FN2892-S Chr8 26392924 26392925 0 0 Deletion 1 INTRON HET FN2892-S Chr9 14446301 14446302 0 0 Deletion 1 INTRON HET FN2892-S Chr9 2960389 2960402 0 0 Deletion 13 intergenic_region HET FN2892-S Chr9 5563905 5563906 0 0 Deletion 1 frameshift_variant HET LOC_Os09g10220 transposon protein, putative, CACTA, En/Spm sub-class, expressed