FN2895-S Chr1 13763923 13763923 0 0 Insertion 1 upstream_gene_variant HET FN2895-S Chr1 2133681 2133681 0 0 Insertion 1 upstream_gene_variant HET FN2895-S Chr1 34270916 34270917 0 0 Deletion 1 upstream_gene_variant HET FN2895-S Chr1 37492112 37492112 0 0 Insertion 4 frameshift_variant HET LOC_Os01g64600 retrotransposon protein, putative, unclassified, expressed FN2895-S Chr1 42325652 42624478 0 0 Inversion 298826 LOC_Os01g73570 vacuolar protein sorting 55 family protein, putative, expressed FN2895-S Chr1 42325657 42624490 0 0 Inversion 298833 LOC_Os01g73570 vacuolar protein sorting 55 family protein, putative, expressed FN2895-S Chr10 19821945 19821946 0 0 Deletion 1 upstream_gene_variant HET FN2895-S Chr10 2722884 2722909 0 0 Deletion 25 upstream_gene_variant HET FN2895-S Chr10 4808960 4808970 0 0 Deletion 10 downstream_gene_variant HET FN2895-S Chr10 7080943 7080943 0 0 Insertion 1 upstream_gene_variant HET FN2895-S Chr11 147509 272435 0 0 Inversion 124926 FN2895-S Chr11 147514 Chr1 27841319 0 Translocation 0 LOC_Os01g48540 glyoxal oxidase-related, putative, expressed FN2895-S Chr11 1483523 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2895-S Chr11 16006926 16006926 0 0 Insertion 2 3_prime_UTR_variant HET FN2895-S Chr11 16714835 16714835 0 0 Insertion 2 upstream_gene_variant HET FN2895-S Chr11 26738186 Chr2 18311741 0 Translocation 0 LOC_Os02g30730 SART-1 family protein, putative, expressed FN2895-S Chr11 272437 Chr1 27852507 0 Translocation 0 LOC_Os01g48570 expressed protein FN2895-S Chr11 6602818 Chr2 4170016 0 Translocation 0 FN2895-S Chr12 13935481 13935481 0 0 Insertion 1 upstream_gene_variant HET FN2895-S Chr12 15182647 15321947 0 0 Inversion 139300 FN2895-S Chr12 15920631 15920631 0 0 Insertion 1 upstream_gene_variant HET FN2895-S Chr12 18996140 18996141 0 0 Deletion 1 downstream_gene_variant HET FN2895-S Chr12 23779575 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2895-S Chr12 25326355 25326362 0 0 Deletion 7 INTRON HET FN2895-S Chr2 11922011 11922011 0 0 Insertion 3 upstream_gene_variant HET FN2895-S Chr2 11930204 11930205 0 0 Deletion 1 frameshift_variant HET LOC_Os02g20260 retrotransposon protein, putative, unclassified, expressed FN2895-S Chr2 12455477 12455480 0 0 Deletion 3 INTERGENIC HET FN2895-S Chr2 13787625 13787626 0 0 Deletion 1 downstream_gene_variant HET FN2895-S Chr2 35023462 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2895-S Chr2 4183787 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2895-S Chr2 9439103 9439105 0 0 Deletion 2 INTERGENIC HET FN2895-S Chr2 9609950 9609950 0 0 Insertion 16 upstream_gene_variant HET FN2895-S Chr3 22671107 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g40780 transport protein-related, putative, expressed FN2895-S Chr3 23783851 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2895-S Chr3 5271418 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g10334 expressed protein FN2895-S Chr3 8260727 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g15120 imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed FN2895-S Chr4 1788947 1788948 0 0 Deletion 1 downstream_gene_variant HET FN2895-S Chr4 25226347 G-A 0 0 Single Base Substitution 0 INTRON HET FN2895-S Chr4 32781000 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2895-S Chr4 34109512 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2895-S Chr5 1010885 1684505 0 0 Inversion 673620 LOC_Os05g02810 protein binding protein, putative, expressed FN2895-S Chr5 11103006 11103006 0 0 Insertion 11 upstream_gene_variant HET FN2895-S Chr5 1398841 1684504 0 0 Inversion 285663 FN2895-S Chr5 20647444 T-G 0 0 Single Base Substitution 0 INTRON HET FN2895-S Chr5 26013397 26013398 0 0 Deletion 1 upstream_gene_variant HET FN2895-S Chr5 28439124 28439131 0 0 Deletion 7 INTERGENIC HET FN2895-S Chr6 11334885 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2895-S Chr6 11334886 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2895-S Chr6 21967735 21967759 0 0 Deletion 24 INTRON HOMO FN2895-S Chr6 23720891 23930688 0 0 Inversion 209797 LOC_Os06g40190 phospholipase D, putative, expressed FN2895-S Chr6 28201553 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2895-S Chr6 30585089 30585089 0 0 Insertion 1 upstream_gene_variant HET FN2895-S Chr6 4052973 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2895-S Chr6 4667803 C-G 0 0 Single Base Substitution 0 INTRON HET FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g12960 expressed protein FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g12970 retrotransposon protein, putative, unclassified, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g12980 cyclin, putative, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g12990 tRNA methyltransferase, putative, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13000 ankyrin repeat domain-containing protein, chloroplast precursor, putative, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13010 retrotransposon protein, putative, unclassified, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13020 DNA polymerase lambda, putative, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13030 OsLIM - LIM domain protein, putative actin-binding protein and transcription factor, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13040 glycosyl hydrolases family 16, putative, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13050 peroxidase family protein, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13060 heat shock protein DnaJ, putative, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13070 hhH-GPD superfamily base excision DNA repair protein, putative, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13080 spotted leaf 11, putative, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13090 armadillo/beta-catenin repeat family protein, putative, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13100 CREG1 precursor, putative, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13110 retrotransposon protein, putative, unclassified, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13120 expressed protein FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13130 expressed protein FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13140 WD domain, G-beta repeat domain containing protein, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13150 hypothetical protein FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13160 viral-response family protein, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13170 expressed protein FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13180 metalloendoproteinase 1 precursor, putative, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13190 expressed protein FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13200 proton-dependent oligopeptide transport, putative, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13210 peptide transporter PTR2, putative, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13215 growth regulator related protein, putative, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13220 expressed protein FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13230 expressed protein FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13240 BURP domain containing protein, expressed FN2895-S Chr6 7088001 7285000 0 0 Deletion 196999 LOC_Os06g13860 RCD1, putative, expressed FN2895-S Chr6 7894842 7894866 0 0 Deletion 24 disruptive_inframe_deletion HET LOC_Os06g14150 retrotransposon protein, putative, unclassified, expressed FN2895-S Chr7 12378092 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2895-S Chr7 1583570 Chr6 23720914 0 Translocation 0 FN2895-S Chr7 1586084 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2895-S Chr7 1589713 Chr6 23930701 0 Translocation 0 LOC_Os06g40190 phospholipase D, putative, expressed FN2895-S Chr7 17511197 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2895-S Chr7 17610008 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2895-S Chr7 18752262 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2895-S Chr7 1969104 Chr2 20513513 0 Translocation 0 FN2895-S Chr7 21086638 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2895-S Chr7 23070367 23244728 0 0 Inversion 174361 FN2895-S Chr7 23070386 23244780 0 0 Inversion 174394 FN2895-S Chr7 7031246 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2895-S Chr8 21750557 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2895-S Chr8 22800889 22800889 0 0 Insertion 1 INTERGENIC HOMO FN2895-S Chr8 27374378 Chr6 2829531 0 Translocation 0 FN2895-S Chr8 2754604 2754604 0 0 Insertion 1 upstream_gene_variant HET FN2895-S Chr9 111531 111531 0 0 Insertion 2 downstream_gene_variant HET FN2895-S Chr9 14752688 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g24760 retrotransposon protein, putative, unclassified, expressed FN2895-S Chr9 21429585 21429586 0 0 Deletion 1 upstream_gene_variant HET FN2895-S Chr9 21429693 21429693 0 0 Insertion 1 upstream_gene_variant HET FN2895-S Chr9 21573886 21573886 0 0 Insertion 120 upstream_gene_variant HET FN2895-S Chr9 44561 Chr4 7742301 0 Translocation 0 FN2895-S Chr9 44594 Chr4 7547059 0 Translocation 0 FN2895-S Chr9 5711829 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g10450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed