FN2896-S Chr1 11985496 11985499 0 0 Deletion 3 INTERGENIC HOMO FN2896-S Chr1 14003759 14100468 0 0 Inversion 96709 LOC_Os01g24860 retrotransposon protein, putative, unclassified, expressed FN2896-S Chr1 14004001 14024000 0 0 Deletion 19999 LOC_Os01g24870 retrotransposon protein, putative, unclassified, expressed FN2896-S Chr1 14004001 14024000 0 0 Deletion 19999 LOC_Os01g24880 zinc finger, C3HC4 type domain containing protein, expressed FN2896-S Chr1 14004001 14024000 0 0 Deletion 19999 LOC_Os01g24890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2896-S Chr1 14004001 14024000 0 0 Deletion 19999 LOC_Os01g25240 expressed protein FN2896-S Chr1 14024723 14100470 0 0 Inversion 75747 FN2896-S Chr1 21090784 21090786 0 0 Deletion 2 INTERGENIC HOMO FN2896-S Chr1 21745868 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2896-S Chr1 25523427 25523437 0 0 Deletion 10 INTERGENIC HET FN2896-S Chr1 3021762 3021763 0 0 Deletion 1 downstream_gene_variant HET FN2896-S Chr1 36199303 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2896-S Chr1 42237932 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2896-S Chr10 168050 168054 0 0 Deletion 4 INTERGENIC HET FN2896-S Chr10 5581938 5581939 0 0 Deletion 1 INTRON HOMO FN2896-S Chr10 5752107 5752107 0 0 Insertion 1 downstream_gene_variant HET FN2896-S Chr10 981227 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2896-S Chr11 12773704 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2896-S Chr11 17775388 17775388 0 0 Insertion 2 upstream_gene_variant HET FN2896-S Chr11 21002210 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2896-S Chr11 21229125 21229125 0 0 Insertion 2 downstream_gene_variant HET FN2896-S Chr11 26537400 26537401 0 0 Deletion 1 intergenic_region HET FN2896-S Chr11 27065427 27065430 0 0 Deletion 3 intron_variant HET FN2896-S Chr11 27065530 27065535 0 0 Deletion 5 intron_variant HET FN2896-S Chr11 27074008 27074008 0 0 Insertion 1 upstream_gene_variant HET FN2896-S Chr11 27437919 Chr7 25323789 0 Translocation 0 FN2896-S Chr12 10258420 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2896-S Chr12 10836618 10836618 0 0 Insertion 1 downstream_gene_variant HET FN2896-S Chr12 14158368 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2896-S Chr12 20192011 20192011 0 0 Insertion 1 upstream_gene_variant HET FN2896-S Chr12 3892001 3910000 0 0 Deletion 17999 LOC_Os12g07750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2896-S Chr12 3892001 3910000 0 0 Deletion 17999 LOC_Os12g07760 expressed protein FN2896-S Chr12 6816087 Chr4 17599704 0 Translocation 0 FN2896-S Chr2 11677537 11677539 0 0 Deletion 2 downstream_gene_variant HET FN2896-S Chr2 14342695 A-T 0 0 Single Base Substitution 0 INTRON HET FN2896-S Chr2 16603579 16603579 0 0 Insertion 60 upstream_gene_variant HET FN2896-S Chr2 24113895 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g39900 transposon protein, putative, unclassified, expressed FN2896-S Chr2 27791562 C-T 0 0 Single Base Substitution 0 INTRON HET FN2896-S Chr2 31422415 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2896-S Chr2 3375739 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2896-S Chr2 34251808 34251808 0 0 Insertion 2 upstream_gene_variant HET FN2896-S Chr2 3443696 A-G 0 0 Single Base Substitution 0 INTRON HET FN2896-S Chr2 35571580 35571580 0 0 Insertion 1 upstream_gene_variant HET FN2896-S Chr3 16145245 16145245 0 0 Insertion 4 intergenic_region HET FN2896-S Chr3 22439216 22442221 0 0 Inversion 3005 FN2896-S Chr3 22439221 22442221 0 0 Inversion 3000 FN2896-S Chr3 23913283 23913285 0 0 Deletion 2 INTERGENIC HOMO FN2896-S Chr3 3433900 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2896-S Chr4 24298433 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2896-S Chr4 24298435 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2896-S Chr4 5348461 5348465 0 0 Deletion 4 upstream_gene_variant HET FN2896-S Chr5 10082770 10082770 0 0 Insertion 1 upstream_gene_variant HET FN2896-S Chr5 17712755 17712764 0 0 Deletion 9 upstream_gene_variant HET FN2896-S Chr5 18703039 18703044 0 0 Deletion 5 INTERGENIC HOMO FN2896-S Chr5 2099564 2676617 0 0 Inversion 577053 FN2896-S Chr5 2099572 2676628 0 0 Inversion 577056 FN2896-S Chr5 3946470 3946471 0 0 Deletion 1 downstream_gene_variant HET FN2896-S Chr5 5347244 5347244 0 0 Insertion 1 downstream_gene_variant HET FN2896-S Chr5 9479663 9479671 0 0 Deletion 8 INTERGENIC HET FN2896-S Chr6 16058969 T-C 0 0 Single Base Substitution 0 INTRON HET FN2896-S Chr6 7011152 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2896-S Chr6 70365 Chr5 29805371 0 Translocation 0 FN2896-S Chr6 8791176 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2896-S Chr7 15976466 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os07g27420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2896-S Chr7 21192256 21192257 0 0 Deletion 1 upstream_gene_variant HET FN2896-S Chr7 24930686 24930687 0 0 Deletion 1 INTERGENIC HET FN2896-S Chr7 7075879 7075883 0 0 Deletion 4 INTERGENIC HET FN2896-S Chr7 7614990 7614991 0 0 Deletion 1 INTERGENIC HET FN2896-S Chr8 9819022 9819038 0 0 Deletion 16 upstream_gene_variant HET FN2896-S Chr9 16353115 16353115 0 0 Insertion 2 upstream_gene_variant HET FN2896-S Chr9 17659428 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2896-S Chr9 17659429 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2896-S Chr9 17659904 17659905 0 0 Deletion 1 UTR_3_PRIME HOMO FN2896-S Chr9 5301122 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET