FN2897-S Chr1 10348131 10348131 0 0 Insertion 3 upstream_gene_variant HET FN2897-S Chr1 10404460 A-G 0 0 Single Base Substitution 0 SPLICE_SITE_DONOR HET LOC_Os01g18500 transposon protein, putative, unclassified FN2897-S Chr1 16404901 16404910 0 0 Deletion 9 downstream_gene_variant HET FN2897-S Chr1 20899033 20899061 0 0 Deletion 28 upstream_gene_variant HET FN2897-S Chr1 22572221 22572222 0 0 Deletion 1 downstream_gene_variant HET FN2897-S Chr1 26394294 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g46380 ketol-acid reductoisomerase, chloroplast precursor, putative, expressed FN2897-S Chr1 28962461 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2897-S Chr1 37209665 37209686 0 0 Deletion 21 upstream_gene_variant HET FN2897-S Chr1 37209759 37209762 0 0 Deletion 3 upstream_gene_variant HET FN2897-S Chr10 1076403 Chr1 30658065 0 Translocation 0 FN2897-S Chr10 11348269 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g21980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2897-S Chr10 11348270 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g21980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2897-S Chr10 11844458 11844458 0 0 Insertion 1 upstream_gene_variant HET FN2897-S Chr10 12914598 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2897-S Chr10 14002198 14002198 0 0 Insertion 1 upstream_gene_variant HET FN2897-S Chr10 16754143 16754154 0 0 Deletion 11 INTRON HOMO FN2897-S Chr10 3244889 3244889 0 0 Insertion 1 upstream_gene_variant HET FN2897-S Chr10 5409188 Chr4 2632481 0 Translocation 0 FN2897-S Chr10 6695189 6695273 0 0 Deletion 84 upstream_gene_variant HET FN2897-S Chr10 6722414 6722414 0 0 Insertion 24 upstream_gene_variant HET FN2897-S Chr10 7854407 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2897-S Chr10 9023677 9023677 0 0 Insertion 4 upstream_gene_variant HET FN2897-S Chr10 9502441 9678858 0 0 Inversion 176417 FN2897-S Chr10 9503001 9601000 0 0 Deletion 97999 LOC_Os10g18704 expressed protein FN2897-S Chr10 9503001 9601000 0 0 Deletion 97999 LOC_Os10g18710 hypothetical protein FN2897-S Chr10 9503001 9601000 0 0 Deletion 97999 LOC_Os10g18720 expressed protein FN2897-S Chr10 9503001 9601000 0 0 Deletion 97999 LOC_Os10g18730 retrotransposon protein, putative, unclassified FN2897-S Chr10 9503001 9601000 0 0 Deletion 97999 LOC_Os10g18740 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2897-S Chr10 9503001 9601000 0 0 Deletion 97999 LOC_Os10g18750 expressed protein FN2897-S Chr10 9503001 9601000 0 0 Deletion 97999 LOC_Os10g18760 dirigent, putative, expressed FN2897-S Chr10 9503001 9601000 0 0 Deletion 97999 LOC_Os10g18770 retrotransposon protein, putative, unclassified FN2897-S Chr10 9503001 9601000 0 0 Deletion 97999 LOC_Os10g18780 retrotransposon protein, putative, unclassified FN2897-S Chr10 9503001 9601000 0 0 Deletion 97999 LOC_Os10g18790 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2897-S Chr10 9503001 9601000 0 0 Deletion 97999 LOC_Os10g18800 conserved hypothetical protein FN2897-S Chr10 9503001 9601000 0 0 Deletion 97999 LOC_Os10g18810 expressed protein FN2897-S Chr10 9503001 9601000 0 0 Deletion 97999 LOC_Os10g18820 dirigent, putative, expressed FN2897-S Chr10 9503001 9601000 0 0 Deletion 97999 LOC_Os10g18830 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2897-S Chr10 9503001 9601000 0 0 Deletion 97999 LOC_Os10g18840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2897-S Chr10 9597003 9679168 0 0 Inversion 82165 FN2897-S Chr10 9678868 Chr1 38974461 0 Translocation 0 LOC_Os01g67134 ribosomal L18p/L5e family protein, putative, expressed FN2897-S Chr10 9679152 Chr1 38974461 0 Translocation 0 LOC_Os01g67134 ribosomal L18p/L5e family protein, putative, expressed FN2897-S Chr11 14583272 14583272 0 0 Insertion 23 downstream_gene_variant HET FN2897-S Chr11 15196680 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2897-S Chr11 17827027 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2897-S Chr11 21849129 21849130 0 0 Deletion 1 upstream_gene_variant HET FN2897-S Chr11 22529379 Chr9 902063 0 Translocation 0 LOC_Os11g37990 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed FN2897-S Chr11 24648405 A-T 0 0 Single Base Substitution 0 INTRON HET FN2897-S Chr11 5292125 5292125 0 0 Insertion 2 upstream_gene_variant HET FN2897-S Chr11 6844094 6844105 0 0 Deletion 11 upstream_gene_variant HET FN2897-S Chr11 6950150 6950153 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os11g12440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2897-S Chr12 11877891 C-T 0 0 Single Base Substitution 0 INTRON HET FN2897-S Chr12 15260540 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2897-S Chr12 16798949 16798949 0 0 Insertion 4 upstream_gene_variant HET FN2897-S Chr12 22991616 22991616 0 0 Insertion 5 frameshift_variant HET LOC_Os12g37460 transposon protein, putative, unclassified, expressed FN2897-S Chr12 2998730 2998730 0 0 Insertion 1 downstream_gene_variant HET FN2897-S Chr2 20287278 20287282 0 0 Deletion 4 downstream_gene_variant HET FN2897-S Chr2 35253305 35253311 0 0 Deletion 6 CODON_DELETION HOMO LOC_Os02g57530 ethylene receptor, putative, expressed FN2897-S Chr2 4467456 4467456 0 0 Insertion 56 downstream_gene_variant HET FN2897-S Chr2 8468172 8468176 0 0 Deletion 4 INTERGENIC HOMO FN2897-S Chr3 10970346 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2897-S Chr3 21241044 21820094 0 0 Inversion 579050 FN2897-S Chr3 21249331 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2897-S Chr3 21780001 21825000 0 0 Deletion 44999 LOC_Os03g39224 hypothetical protein FN2897-S Chr3 21780001 21825000 0 0 Deletion 44999 LOC_Os03g39230 OTU-like cysteine protease family protein, putative, expressed FN2897-S Chr3 21780001 21825000 0 0 Deletion 44999 LOC_Os03g39240 expressed protein FN2897-S Chr3 21780001 21825000 0 0 Deletion 44999 LOC_Os03g39250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2897-S Chr3 21780001 21825000 0 0 Deletion 44999 LOC_Os03g39270 expressed protein FN2897-S Chr3 21780001 21825000 0 0 Deletion 44999 LOC_Os03g39284 retrotransposon protein, putative, unclassified, expressed FN2897-S Chr3 21780001 21825000 0 0 Deletion 44999 LOC_Os03g39350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2897-S Chr3 27940344 27940344 0 0 Insertion 1 upstream_gene_variant HET FN2897-S Chr3 28982499 28982499 0 0 Insertion 2 INTERGENIC HOMO FN2897-S Chr3 3707691 3707751 0 0 Deletion 60 disruptive_inframe_insertion HET LOC_Os03g07270 glycine-rich cell wall protein, putative, expressed FN2897-S Chr3 4063767 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2897-S Chr3 7300112 7300113 0 0 Deletion 1 upstream_gene_variant HET FN2897-S Chr4 12787751 12787752 0 0 Deletion 1 upstream_gene_variant HET FN2897-S Chr4 14547660 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2897-S Chr4 18726926 18726938 0 0 Deletion 12 upstream_gene_variant HET FN2897-S Chr4 18884108 18884112 0 0 Deletion 4 upstream_gene_variant HET FN2897-S Chr4 19009544 Chr2 17021801 0 Translocation 0 FN2897-S Chr4 1959100 1959102 0 0 Deletion 2 upstream_gene_variant HET FN2897-S Chr4 1998944 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2897-S Chr4 26050638 26050639 0 0 Deletion 1 upstream_gene_variant HET FN2897-S Chr4 27644425 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2897-S Chr4 28820146 28820146 0 0 Insertion 1 upstream_gene_variant HET FN2897-S Chr4 31890704 31890704 0 0 Insertion 1 upstream_gene_variant HET FN2897-S Chr4 34452790 A-T 0 0 Single Base Substitution 0 INTRON HET FN2897-S Chr4 9061678 9061679 0 0 Deletion 1 upstream_gene_variant HET FN2897-S Chr5 11574713 11574713 0 0 Insertion 1 downstream_gene_variant HET FN2897-S Chr5 11598476 11598479 0 0 Deletion 3 intron_variant HET FN2897-S Chr5 12901257 12901264 0 0 Deletion 7 upstream_gene_variant HET FN2897-S Chr5 19696785 19696786 0 0 Deletion 1 upstream_gene_variant HET FN2897-S Chr5 20416205 20416205 0 0 Insertion 1 intron_variant HET FN2897-S Chr5 26223390 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2897-S Chr5 26668448 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2897-S Chr5 29849191 29849899 0 0 Deletion 708 intergenic_region HET FN2897-S Chr5 3345001 3457000 0 0 Deletion 111999 LOC_Os05g06510 4Fe-4S binding domain containing protein, expressed FN2897-S Chr5 3345001 3457000 0 0 Deletion 111999 LOC_Os05g06520 helix-loop-helix DNA-binding domain containing protein, expressed FN2897-S Chr5 3345001 3457000 0 0 Deletion 111999 LOC_Os05g06530 expressed protein FN2897-S Chr5 3345001 3457000 0 0 Deletion 111999 LOC_Os05g06540 expressed protein FN2897-S Chr5 3345001 3457000 0 0 Deletion 111999 LOC_Os05g06550 expressed protein FN2897-S Chr5 3345001 3457000 0 0 Deletion 111999 LOC_Os05g06560 expressed protein FN2897-S Chr5 3345001 3457000 0 0 Deletion 111999 LOC_Os05g06570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2897-S Chr5 3345001 3457000 0 0 Deletion 111999 LOC_Os05g06580 retrotransposon protein, putative, unclassified, expressed FN2897-S Chr5 3345001 3457000 0 0 Deletion 111999 LOC_Os05g06590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2897-S Chr5 3345001 3457000 0 0 Deletion 111999 LOC_Os05g06600 expressed protein FN2897-S Chr5 3345001 3457000 0 0 Deletion 111999 LOC_Os05g06610 retrotransposon protein, putative, unclassified, expressed FN2897-S Chr5 3345001 3457000 0 0 Deletion 111999 LOC_Os05g06620 retrotransposon protein, putative, unclassified FN2897-S Chr5 3345001 3457000 0 0 Deletion 111999 LOC_Os05g06630 expressed protein FN2897-S Chr5 3345001 3457000 0 0 Deletion 111999 LOC_Os05g06640 retrotransposon protein, putative, unclassified, expressed FN2897-S Chr5 3345001 3457000 0 0 Deletion 111999 LOC_Os05g06650 expressed protein FN2897-S Chr5 3345001 3457000 0 0 Deletion 111999 LOC_Os05g06660 OsSCP26 - Putative Serine Carboxypeptidase homologue, expressed FN2897-S Chr5 3345001 3457000 0 0 Deletion 111999 LOC_Os05g08300 retrotransposon protein, putative, unclassified, expressed FN2897-S Chr5 3571557 3571560 0 0 Deletion 3 INTERGENIC HET FN2897-S Chr5 3579783 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2897-S Chr5 3936927 3936929 0 0 Deletion 2 intron_variant HET FN2897-S Chr6 22841878 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2897-S Chr6 3024365 Chr2 16275481 0 Translocation 0 FN2897-S Chr6 5481990 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2897-S Chr6 997606 997606 0 0 Insertion 91 upstream_gene_variant HET FN2897-S Chr7 11302752 11302752 0 0 Insertion 1 downstream_gene_variant HET FN2897-S Chr7 18968654 18968710 0 0 Deletion 56 frameshift_variant HET LOC_Os07g31900 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2897-S Chr7 21715954 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2897-S Chr7 24756502 24756503 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os07g41320 COBRA-like protein precursor, putative, expressed FN2897-S Chr7 4773878 Chr4 4289191 0 Translocation 0 FN2897-S Chr7 4774280 Chr4 4289185 0 Translocation 0 LOC_Os07g09140 expressed protein FN2897-S Chr7 7188318 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2897-S Chr7 7758335 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2897-S Chr7 8015051 C-T 0 0 Single Base Substitution 0 INTRON HET FN2897-S Chr8 11002611 11002629 0 0 Deletion 18 downstream_gene_variant HET FN2897-S Chr8 12820254 12820254 0 0 Insertion 1 upstream_gene_variant HET FN2897-S Chr8 13792219 13792279 0 0 Deletion 60 upstream_gene_variant HET FN2897-S Chr8 15307845 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2897-S Chr8 19389187 Chr4 18052947 0 Translocation 0 FN2897-S Chr8 20767372 20767372 0 0 Insertion 1 upstream_gene_variant HET FN2897-S Chr8 25123692 25123692 0 0 Insertion 51 upstream_gene_variant HET FN2897-S Chr8 27625588 27625590 0 0 Deletion 2 INTERGENIC HET FN2897-S Chr8 5291837 5291837 0 0 Insertion 1 upstream_gene_variant HET FN2897-S Chr8 5495784 Chr2 10021553 0 Translocation 0 FN2897-S Chr8 5915829 5915832 0 0 Deletion 3 INTERGENIC HOMO FN2897-S Chr8 6240565 6240584 0 0 Deletion 19 INTRON HOMO FN2897-S Chr8 6762455 G-T 0 0 Single Base Substitution 0 INTRON HET FN2897-S Chr8 6762456 G-T 0 0 Single Base Substitution 0 INTRON HET FN2897-S Chr9 14772197 14772197 0 0 Insertion 1 upstream_gene_variant HET FN2897-S Chr9 16723758 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2897-S Chr9 16725793 16733745 0 0 Inversion 7952 LOC_Os09g27540 C2 domain containing protein, expressed FN2897-S Chr9 16725797 16733753 0 0 Inversion 7956 LOC_Os09g27540 C2 domain containing protein, expressed FN2897-S Chr9 3987949 C-T 0 0 Single Base Substitution 0 INTRON HET FN2897-S Chr9 6953482 6953485 0 0 Deletion 3 INTERGENIC HOMO