FN2898-S Chr1 1259655 1259655 0 0 Insertion 1 upstream_gene_variant HET FN2898-S Chr1 13407273 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2898-S Chr1 15237821 15237840 0 0 Deletion 19 downstream_gene_variant HET FN2898-S Chr1 16618909 16618911 0 0 Deletion 2 downstream_gene_variant HET FN2898-S Chr1 19936519 19936519 0 0 Insertion 1 upstream_gene_variant HET FN2898-S Chr1 20617491 20617491 0 0 Insertion 5 upstream_gene_variant HET FN2898-S Chr1 21214587 21214587 0 0 Insertion 5 frameshift_variant HET LOC_Os01g37890 transposon protein, putative, unclassified, expressed FN2898-S Chr1 21619168 21619169 0 0 Deletion 1 downstream_gene_variant HET FN2898-S Chr1 22329000 22329001 0 0 Deletion 1 downstream_gene_variant HET FN2898-S Chr1 25383974 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g44260 dihydroflavonol-4-reductase, putative, expressed FN2898-S Chr1 28218601 28218601 0 0 Insertion 7 frameshift_variant HET LOC_Os01g49090 retrotransposon protein, putative, unclassified, expressed FN2898-S Chr1 29698272 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2898-S Chr1 32050075 32050075 0 0 Insertion 2 frameshift_variant HET LOC_Os01g55620 transposon protein, putative, unclassified, expressed FN2898-S Chr1 38937310 38937311 0 0 Deletion 1 upstream_gene_variant HET FN2898-S Chr1 40415336 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2898-S Chr1 41324818 41324818 0 0 Insertion 2 INTERGENIC HET FN2898-S Chr1 42889149 42889163 0 0 Deletion 14 upstream_gene_variant HET FN2898-S Chr1 5350356 5350357 0 0 Deletion 1 downstream_gene_variant HET FN2898-S Chr10 1336288 1336288 0 0 Insertion 2 upstream_gene_variant HET FN2898-S Chr10 15710663 15710680 0 0 Deletion 17 upstream_gene_variant HET FN2898-S Chr10 2010069 2010072 0 0 Deletion 3 upstream_gene_variant HET FN2898-S Chr10 20215934 20215973 0 0 Deletion 39 upstream_gene_variant HET FN2898-S Chr10 3868848 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g07340 expressed protein FN2898-S Chr10 4013843 4013843 0 0 Insertion 1 frameshift_variant HET LOC_Os10g07530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2898-S Chr10 5091446 5091446 0 0 Insertion 1 frameshift_variant HET LOC_Os10g09440 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2898-S Chr10 5746023 5746024 0 0 Deletion 1 upstream_gene_variant HET FN2898-S Chr10 6817709 6817721 0 0 Deletion 12 intron_variant HET FN2898-S Chr10 6854207 6854208 0 0 Deletion 1 upstream_gene_variant HET FN2898-S Chr10 7058293 Chr7 10666269 0 Translocation 0 FN2898-S Chr10 7143346 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2898-S Chr11 10500273 10500275 0 0 Deletion 2 upstream_gene_variant HET FN2898-S Chr11 11501358 11501359 0 0 Deletion 1 upstream_gene_variant HET FN2898-S Chr11 13479934 13479934 0 0 Insertion 84 stop_gained&inframe_insertion HET LOC_Os11g23810 transposon protein, putative, CACTA, En/Spm sub-class FN2898-S Chr11 18895317 18895317 0 0 Insertion 1 upstream_gene_variant HET FN2898-S Chr11 22528252 22528253 0 0 Deletion 1 intron_variant HET FN2898-S Chr11 23368397 Chr5 13251372 0 Translocation 0 FN2898-S Chr11 23966292 23966292 0 0 Insertion 1 intron_variant HET FN2898-S Chr11 2629298 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2898-S Chr11 3249825 3249825 0 0 Insertion 2 3_prime_UTR_variant HET FN2898-S Chr11 4780578 4780581 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os11g09000 transposon protein, putative, unclassified FN2898-S Chr11 7952743 7952744 0 0 Deletion 1 intergenic_region HET FN2898-S Chr11 8879578 Chr5 4928621 0 Translocation 0 FN2898-S Chr11 9979902 9979902 0 0 Insertion 1 intron_variant HET FN2898-S Chr12 10546060 10546061 0 0 Deletion 1 splice_region_variant&intron_variant HET FN2898-S Chr12 12301752 12301752 0 0 Insertion 1 upstream_gene_variant HET FN2898-S Chr12 13048898 Chr11 9292414 0 Translocation 0 FN2898-S Chr12 13726489 13726490 0 0 Deletion 1 downstream_gene_variant HET FN2898-S Chr12 18642349 Chr10 17911445 0 Translocation 0 FN2898-S Chr12 19535560 19535560 0 0 Insertion 1 upstream_gene_variant HET FN2898-S Chr12 20149123 Chr9 22864450 0 Translocation 0 FN2898-S Chr12 23804296 23804296 0 0 Insertion 61 downstream_gene_variant HET FN2898-S Chr12 25194334 25194334 0 0 Insertion 41 upstream_gene_variant HET FN2898-S Chr12 27005786 Chr2 10461208 0 Translocation 0 FN2898-S Chr12 8513043 8513048 0 0 Deletion 5 upstream_gene_variant HET FN2898-S Chr12 90092 90093 0 0 Deletion 1 upstream_gene_variant HET FN2898-S Chr2 10193142 10193142 0 0 Insertion 1 upstream_gene_variant HET FN2898-S Chr2 18678147 18678147 0 0 Insertion 8 upstream_gene_variant HET FN2898-S Chr2 23462995 23462996 0 0 Deletion 1 downstream_gene_variant HET FN2898-S Chr2 32674196 32674197 0 0 Deletion 1 upstream_gene_variant HET FN2898-S Chr2 34491774 34491774 0 0 Insertion 23 downstream_gene_variant HET FN2898-S Chr2 35383358 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g57780 expressed protein FN2898-S Chr2 8404103 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2898-S Chr2 9199648 9199649 0 0 Deletion 1 upstream_gene_variant HET FN2898-S Chr3 11063773 11063795 0 0 Deletion 22 downstream_gene_variant HET FN2898-S Chr3 13391047 13391099 0 0 Deletion 52 downstream_gene_variant HET FN2898-S Chr3 13755468 13755469 0 0 Deletion 1 intron_variant HET FN2898-S Chr3 14691857 14691857 0 0 Insertion 12 inframe_insertion HET LOC_Os03g25660 expressed protein FN2898-S Chr3 18986302 18986304 0 0 Deletion 2 upstream_gene_variant HET FN2898-S Chr3 33593502 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2898-S Chr3 7680987 7680996 0 0 Deletion 9 upstream_gene_variant HET FN2898-S Chr3 9174753 9174769 0 0 Deletion 16 upstream_gene_variant HET FN2898-S Chr4 10465807 10465808 0 0 Deletion 1 upstream_gene_variant HET FN2898-S Chr4 11225828 11225828 0 0 Insertion 1 downstream_gene_variant HET FN2898-S Chr4 20779290 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g34300 serine/threonine-protein kinase receptor precursor, putative, expressed FN2898-S Chr4 23454806 23454806 0 0 Insertion 4 frameshift_variant HET LOC_Os04g39400 retrotransposon protein, putative, unclassified, expressed FN2898-S Chr4 25271416 Chr2 27312756 0 Translocation 0 FN2898-S Chr4 2574972 2574972 0 0 Insertion 1 upstream_gene_variant HET FN2898-S Chr4 2644020 2644021 0 0 Deletion 1 downstream_gene_variant HET FN2898-S Chr4 26501103 26501103 0 0 Insertion 2 upstream_gene_variant HET FN2898-S Chr4 26785778 26785779 0 0 Deletion 1 upstream_gene_variant HET FN2898-S Chr4 2989619 2989619 0 0 Insertion 1 downstream_gene_variant HET FN2898-S Chr4 31870252 31870253 0 0 Deletion 1 intergenic_region HET FN2898-S Chr4 35483967 35483967 0 0 Insertion 3 intergenic_region HET FN2898-S Chr4 5493785 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2898-S Chr4 6467385 6467396 0 0 Deletion 11 upstream_gene_variant HET FN2898-S Chr4 7722161 7722162 0 0 Deletion 1 upstream_gene_variant HET FN2898-S Chr4 9626315 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2898-S Chr5 1026491 1026491 0 0 Insertion 1 upstream_gene_variant HET FN2898-S Chr5 11225667 11225667 0 0 Insertion 7 upstream_gene_variant HET FN2898-S Chr5 11345004 11345004 0 0 Insertion 2 downstream_gene_variant HET FN2898-S Chr5 11604821 11604822 0 0 Deletion 1 downstream_gene_variant HET FN2898-S Chr5 13954899 13954899 0 0 Insertion 3 inframe_insertion HET LOC_Os05g24170 retrotransposon protein, putative, unclassified, expressed FN2898-S Chr5 15863291 15863293 0 0 Deletion 2 upstream_gene_variant HET FN2898-S Chr5 15908146 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2898-S Chr5 19193599 Chr4 11717468 0 Translocation 0 FN2898-S Chr5 22932688 23828680 0 0 Inversion 895992 LOC_Os05g39110 selT-like protein precursor, putative, expressed FN2898-S Chr5 22932704 23828691 0 0 Inversion 895987 LOC_Os05g39110 selT-like protein precursor, putative, expressed FN2898-S Chr5 27816315 27816316 0 0 Deletion 1 upstream_gene_variant HET FN2898-S Chr5 4013813 4013814 0 0 Deletion 1 upstream_gene_variant HET FN2898-S Chr5 5075411 5075412 0 0 Deletion 1 upstream_gene_variant HET FN2898-S Chr5 6411381 6411382 0 0 Deletion 1 upstream_gene_variant HET FN2898-S Chr5 7612172 7612172 0 0 Insertion 1 upstream_gene_variant HET FN2898-S Chr6 10571668 10571668 0 0 Insertion 2 upstream_gene_variant HET FN2898-S Chr6 12136784 12341686 0 0 Inversion 204902 LOC_Os06g21010 transposon protein, putative, unclassified, expressed FN2898-S Chr6 12136785 12341690 0 0 Inversion 204905 LOC_Os06g21010 transposon protein, putative, unclassified, expressed FN2898-S Chr6 13050403 13050409 0 0 Deletion 6 upstream_gene_variant HET FN2898-S Chr6 17372718 17372718 0 0 Insertion 1 intergenic_region HET FN2898-S Chr6 17379621 A-G 0 0 Single Base Substitution 0 INTRON HET FN2898-S Chr6 18870148 18870148 0 0 Insertion 1 frameshift_variant HET LOC_Os06g32450 retrotransposon protein, putative, Ty3-gypsy subclass FN2898-S Chr6 22905916 22905916 0 0 Insertion 2 downstream_gene_variant HET FN2898-S Chr6 24551280 24551280 0 0 Insertion 2 downstream_gene_variant HET FN2898-S Chr6 27168408 27168408 0 0 Insertion 2 INTERGENIC HET FN2898-S Chr6 28528186 28528188 0 0 Deletion 2 downstream_gene_variant HET FN2898-S Chr6 28929352 28929354 0 0 Deletion 2 intron_variant HET FN2898-S Chr6 30303746 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN2898-S Chr6 30594838 30594844 0 0 Deletion 6 upstream_gene_variant HET FN2898-S Chr6 524810 524811 0 0 Deletion 1 intron_variant HET FN2898-S Chr6 5766622 5766624 0 0 Deletion 2 intergenic_region HET FN2898-S Chr6 7070379 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2898-S Chr6 8204721 8204723 0 0 Deletion 2 downstream_gene_variant HET FN2898-S Chr6 8967845 8967847 0 0 Deletion 2 upstream_gene_variant HET FN2898-S Chr7 13579942 13580013 0 0 Deletion 71 downstream_gene_variant HET FN2898-S Chr7 14059437 14059442 0 0 Deletion 5 upstream_gene_variant HET FN2898-S Chr7 17430498 17430498 0 0 Insertion 5 upstream_gene_variant HET FN2898-S Chr7 17475892 17475894 0 0 Deletion 2 upstream_gene_variant HET FN2898-S Chr7 19024353 19024353 0 0 Insertion 1 upstream_gene_variant HET FN2898-S Chr7 26828531 26828532 0 0 Deletion 1 upstream_gene_variant HET FN2898-S Chr7 27634636 27634636 0 0 Insertion 91 upstream_gene_variant HET FN2898-S Chr7 2766774 2766774 0 0 Insertion 2 5_prime_UTR_variant HET FN2898-S Chr7 8637741 8637783 0 0 Deletion 42 upstream_gene_variant HET FN2898-S Chr7 9513202 9513202 0 0 Insertion 1 downstream_gene_variant HET FN2898-S Chr7 9873810 9873825 0 0 Deletion 15 disruptive_inframe_deletion HET LOC_Os07g16810 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2898-S Chr8 11741992 11741992 0 0 Insertion 1 downstream_gene_variant HET FN2898-S Chr8 11868443 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2898-S Chr8 13038773 13038775 0 0 Deletion 2 upstream_gene_variant HET FN2898-S Chr8 1362707 1362707 0 0 Insertion 2 INTERGENIC HOMO FN2898-S Chr8 14469656 14469657 0 0 Deletion 1 downstream_gene_variant HET FN2898-S Chr8 16564742 16564742 0 0 Insertion 1 downstream_gene_variant HET FN2898-S Chr8 17952539 17952539 0 0 Insertion 6 intergenic_region HET FN2898-S Chr8 18901597 18901597 0 0 Insertion 1 upstream_gene_variant HET FN2898-S Chr8 23461108 23461108 0 0 Insertion 33 disruptive_inframe_insertion HET LOC_Os08g37120 transposon protein, putative, unclassified, expressed FN2898-S Chr8 6527321 6527331 0 0 Deletion 10 upstream_gene_variant HET FN2898-S Chr9 15262128 15262128 0 0 Insertion 5 intergenic_region HET FN2898-S Chr9 15699324 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2898-S Chr9 15717592 15717592 0 0 Insertion 2 INTERGENIC HET FN2898-S Chr9 16244532 16244533 0 0 Deletion 1 upstream_gene_variant HET FN2898-S Chr9 16373313 16373313 0 0 Insertion 3 downstream_gene_variant HET FN2898-S Chr9 17057864 17057865 0 0 Deletion 1 upstream_gene_variant HET FN2898-S Chr9 18666330 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2898-S Chr9 22346793 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2898-S Chr9 2441356 2441356 0 0 Insertion 1 downstream_gene_variant HET FN2898-S Chr9 5579140 5579140 0 0 Insertion 45 disruptive_inframe_insertion HET LOC_Os09g10240 retrotransposon protein, putative, unclassified, expressed FN2898-S Chr9 7057480 7057480 0 0 Insertion 1 downstream_gene_variant HET FN2898-S Chr9 7988496 7988509 0 0 Deletion 13 frameshift_variant HET LOC_Os09g13670 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2898-S Chr9 8027636 8027636 0 0 Insertion 3 upstream_gene_variant HET FN2898-S Chr9 9640859 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2898-S Chr9 9754002 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO