FN2899-S Chr1 1314466 1314466 0 0 Insertion 16 upstream_gene_variant HET FN2899-S Chr1 15310997 G-C 0 0 Single Base Substitution 0 INTRON HOMO FN2899-S Chr1 17298231 17298231 0 0 Insertion 1 upstream_gene_variant HET FN2899-S Chr1 21058833 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2899-S Chr1 26679328 26679328 0 0 Insertion 1 upstream_gene_variant HET FN2899-S Chr1 32952714 32952714 0 0 Insertion 1 upstream_gene_variant HET FN2899-S Chr1 39031941 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2899-S Chr10 10883329 10883329 0 0 Insertion 1 upstream_gene_variant HET FN2899-S Chr10 19243724 19243725 0 0 Deletion 1 upstream_gene_variant HET FN2899-S Chr10 2413760 2413760 0 0 Insertion 1 upstream_gene_variant HET FN2899-S Chr10 6469197 6469197 0 0 Insertion 3 upstream_gene_variant HET FN2899-S Chr11 11227770 11227776 0 0 Deletion 6 INTERGENIC HOMO FN2899-S Chr11 11380109 11380110 0 0 Deletion 1 upstream_gene_variant HET FN2899-S Chr11 21327646 21327728 0 0 Deletion 82 upstream_gene_variant HET FN2899-S Chr11 28679770 28679817 0 0 Deletion 47 upstream_gene_variant HET FN2899-S Chr11 4615980 C-G 0 0 Single Base Substitution 0 INTRON HOMO FN2899-S Chr11 7437197 7437197 0 0 Insertion 100 upstream_gene_variant HET FN2899-S Chr12 12326758 A-G 0 0 Single Base Substitution 0 INTRON HET FN2899-S Chr12 12601803 G-A 0 0 Single Base Substitution 0 INTRON HET FN2899-S Chr12 13147524 13147525 0 0 Deletion 1 upstream_gene_variant HET FN2899-S Chr12 18796416 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2899-S Chr12 19801648 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2899-S Chr12 21547001 21553000 0 0 Deletion 5999 LOC_Os12g35720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2899-S Chr12 22828093 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2899-S Chr12 24970605 24970606 0 0 Deletion 1 upstream_gene_variant HET FN2899-S Chr2 10756465 10756549 0 0 Deletion 84 upstream_gene_variant HET FN2899-S Chr2 15073924 15073925 0 0 Deletion 1 downstream_gene_variant HET FN2899-S Chr2 18758570 18758571 0 0 Deletion 1 intergenic_region HET FN2899-S Chr2 25835136 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2899-S Chr3 13468456 13468460 0 0 Deletion 4 intron_variant HET FN2899-S Chr3 13558949 13558949 0 0 Insertion 69 upstream_gene_variant HET FN2899-S Chr3 15350486 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g26880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2899-S Chr3 19812067 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2899-S Chr3 21805777 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2899-S Chr3 24678076 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2899-S Chr3 30175404 30175405 0 0 Deletion 1 INTERGENIC HOMO FN2899-S Chr3 30229513 30229527 0 0 Deletion 14 INTRON HOMO FN2899-S Chr3 34137346 34137346 0 0 Insertion 19 frameshift_variant HET LOC_Os03g60020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2899-S Chr3 3787262 3787262 0 0 Insertion 1 upstream_gene_variant HET FN2899-S Chr4 11585015 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2899-S Chr4 2561978 2561978 0 0 Insertion 89 upstream_gene_variant HET FN2899-S Chr4 2592074 2592075 0 0 Deletion 1 upstream_gene_variant HET FN2899-S Chr4 2644025 2644025 0 0 Insertion 1 downstream_gene_variant HET FN2899-S Chr4 4715142 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2899-S Chr4 4823873 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2899-S Chr4 5623350 C-T 0 0 Single Base Substitution 0 INTRON HET FN2899-S Chr4 5888871 5888883 0 0 Deletion 12 inframe_deletion HET LOC_Os04g10850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2899-S Chr4 6896663 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2899-S Chr4 6896665 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2899-S Chr5 1609754 1609757 0 0 Deletion 3 INTERGENIC HET FN2899-S Chr5 1654472 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2899-S Chr5 16793890 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2899-S Chr5 20356457 20356458 0 0 Deletion 1 INTERGENIC HET FN2899-S Chr6 11827213 11827213 0 0 Insertion 1 downstream_gene_variant HET FN2899-S Chr6 20300055 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2899-S Chr6 21615962 G-C 0 0 Single Base Substitution 0 INTRON HOMO FN2899-S Chr6 24064990 24064990 0 0 Insertion 15 downstream_gene_variant HET FN2899-S Chr6 28607046 28607046 0 0 Insertion 36 downstream_gene_variant HET FN2899-S Chr6 5300263 5300269 0 0 Deletion 6 CODON_DELETION HET LOC_Os06g10310 growth regulating factor protein, putative, expressed FN2899-S Chr7 12661449 12661451 0 0 Deletion 2 frameshift_variant HET LOC_Os07g22504 NADPH-dependent oxidoreductase, putative, expressed FN2899-S Chr7 18936645 18936711 0 0 Deletion 66 intron_variant HET FN2899-S Chr7 9871334 9871334 0 0 Insertion 24 intron_variant HET FN2899-S Chr8 1058949 1058956 0 0 Deletion 7 FRAME_SHIFT HOMO LOC_Os08g02560 DUF1517 domain containing protein, putative, expressed FN2899-S Chr8 12636136 12636140 0 0 Deletion 4 upstream_gene_variant HET FN2899-S Chr8 16194393 16194464 0 0 Deletion 71 upstream_gene_variant HET FN2899-S Chr8 2626546 2626548 0 0 Deletion 2 INTERGENIC HET FN2899-S Chr9 10709994 10709995 0 0 Deletion 1 frameshift_variant HET LOC_Os09g17510 retrotransposon protein, putative, unclassified FN2899-S Chr9 132738 132739 0 0 Deletion 1 upstream_gene_variant HET FN2899-S Chr9 13750392 13750393 0 0 Deletion 1 intron_variant HET FN2899-S Chr9 13959340 13959341 0 0 Deletion 1 upstream_gene_variant HET FN2899-S Chr9 20696847 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2899-S Chr9 4235267 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2899-S Chr9 8138894 8138894 0 0 Insertion 2 downstream_gene_variant HET FN2899-S Chr9 8741514 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g14720 retrotransposon protein, putative, unclassified, expressed