FN2902-S Chr1 12390980 12390981 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr1 17637586 17637586 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr1 21543083 C-T 0 0 Single Base Substitution 0 INTRON HET FN2902-S Chr1 23494088 23494093 0 0 Deletion 5 upstream_gene_variant HET FN2902-S Chr1 23695338 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2902-S Chr1 24733731 24733732 0 0 Deletion 1 intergenic_region HET FN2902-S Chr1 25629348 25629348 0 0 Insertion 1 downstream_gene_variant HET FN2902-S Chr1 32388773 32388773 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr1 41423418 41423418 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr1 43246283 43246283 0 0 Insertion 2 downstream_gene_variant HET FN2902-S Chr10 10458355 10458356 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr10 12291178 12291179 0 0 Deletion 1 frameshift_variant HET LOC_Os10g23990 transposon protein, putative, CACTA, En/Spm sub-class FN2902-S Chr10 12648560 12648563 0 0 Deletion 3 downstream_gene_variant HET FN2902-S Chr10 13200849 13200850 0 0 Deletion 1 downstream_gene_variant HET FN2902-S Chr10 13789001 13811000 0 0 Deletion 21999 LOC_Os10g26500 homeobox associated leucine zipper, putative, expressed FN2902-S Chr10 13789001 13811000 0 0 Deletion 21999 LOC_Os10g26920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2902-S Chr10 14479441 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2902-S Chr10 16997101 16997161 0 0 Deletion 60 upstream_gene_variant HET FN2902-S Chr10 2076631 2076631 0 0 Insertion 2 upstream_gene_variant HET FN2902-S Chr10 21384598 21384598 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr10 21612212 21612212 0 0 Insertion 3 intron_variant HET FN2902-S Chr10 23138405 23138405 0 0 Insertion 1 downstream_gene_variant HET FN2902-S Chr10 3699208 3699208 0 0 Insertion 2 downstream_gene_variant HET FN2902-S Chr10 4423551 4423554 0 0 Deletion 3 intron_variant HET FN2902-S Chr10 6411944 6411945 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr10 8386097 8386099 0 0 Deletion 2 upstream_gene_variant HET FN2902-S Chr10 8447448 8447449 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr10 8653054 8653054 0 0 Insertion 1 downstream_gene_variant HET FN2902-S Chr10 9479013 9479014 0 0 Deletion 1 downstream_gene_variant HET FN2902-S Chr11 14925452 14925452 0 0 Insertion 2 upstream_gene_variant HET FN2902-S Chr11 15043728 15043728 0 0 Insertion 1 downstream_gene_variant HET FN2902-S Chr11 16553159 16553160 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr11 18136649 18136649 0 0 Insertion 23 downstream_gene_variant HET FN2902-S Chr11 18714501 18714501 0 0 Insertion 2 downstream_gene_variant HET FN2902-S Chr11 18792853 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2902-S Chr11 19563651 19563651 0 0 Insertion 26 upstream_gene_variant HET FN2902-S Chr11 20225999 20226004 0 0 Deletion 5 upstream_gene_variant HET FN2902-S Chr11 2085951 2085951 0 0 Insertion 4 downstream_gene_variant HET FN2902-S Chr11 25450136 25450136 0 0 Insertion 2 downstream_gene_variant HET FN2902-S Chr11 26865288 26865288 0 0 Insertion 28 downstream_gene_variant HET FN2902-S Chr11 4227619 4227620 0 0 Deletion 1 3_prime_UTR_variant HET FN2902-S Chr11 9987199 9987199 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr12 11489259 11489259 0 0 Insertion 3 upstream_gene_variant HET FN2902-S Chr12 12067448 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2902-S Chr12 20493706 20493707 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr12 22739223 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2902-S Chr12 22739225 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2902-S Chr12 23373229 23373229 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr12 25133813 25133814 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr12 25599961 25599963 0 0 Deletion 2 frameshift_variant HET LOC_Os12g41280 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2902-S Chr12 25685837 25685837 0 0 Insertion 107 downstream_gene_variant HET FN2902-S Chr12 4557179 T-A 0 0 Single Base Substitution 0 INTRON HET FN2902-S Chr2 12236928 12236992 0 0 Deletion 64 intergenic_region HET FN2902-S Chr2 12991458 12991485 0 0 Deletion 27 upstream_gene_variant HET FN2902-S Chr2 13341749 13341750 0 0 Deletion 1 downstream_gene_variant HET FN2902-S Chr2 13341930 13341931 0 0 Deletion 1 downstream_gene_variant HET FN2902-S Chr2 1521925 1521925 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr2 18666674 18666674 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr2 19439665 19439665 0 0 Insertion 103 upstream_gene_variant HET FN2902-S Chr2 23078674 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2902-S Chr2 32641001 32711000 0 0 Deletion 69999 LOC_Os02g53320 universal stress protein domain containing protein, putative, expressed FN2902-S Chr2 32641001 32711000 0 0 Deletion 69999 LOC_Os02g53330 1-aminocyclopropane-1-carboxylate deaminase, putative, expressed FN2902-S Chr2 32641001 32711000 0 0 Deletion 69999 LOC_Os02g53340 cyclic nucleotide-gated ion channel, putative, expressed FN2902-S Chr2 32641001 32711000 0 0 Deletion 69999 LOC_Os02g53350 expressed protein FN2902-S Chr2 32641001 32711000 0 0 Deletion 69999 LOC_Os02g53360 expressed protein FN2902-S Chr2 32641001 32711000 0 0 Deletion 69999 LOC_Os02g53370 expressed protein FN2902-S Chr2 32641001 32711000 0 0 Deletion 69999 LOC_Os02g53380 expressed protein FN2902-S Chr2 32641001 32711000 0 0 Deletion 69999 LOC_Os02g53384 expressed protein FN2902-S Chr2 32641001 32711000 0 0 Deletion 69999 LOC_Os02g53390 expressed protein FN2902-S Chr2 32641001 32711000 0 0 Deletion 69999 LOC_Os02g53400 thioredoxin, putative, expressed FN2902-S Chr2 32641001 32711000 0 0 Deletion 69999 LOC_Os02g53410 expressed protein FN2902-S Chr2 32641001 32711000 0 0 Deletion 69999 LOC_Os02g53420 DnaK family protein, putative, expressed FN2902-S Chr2 32641001 32711000 0 0 Deletion 69999 LOC_Os02g53430 DNA-3-methyladenine glycosylase, putative, expressed FN2902-S Chr2 32641001 32711000 0 0 Deletion 69999 LOC_Os02g53440 expressed protein FN2902-S Chr2 32641001 32711000 0 0 Deletion 69999 LOC_Os02g53450 expressed protein FN2902-S Chr2 32641001 32711000 0 0 Deletion 69999 LOC_Os02g53480 expressed protein FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53490 cation efflux family protein, putative, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53510 oxidoreductase/ transition metal ion binding protein, putative, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53520 kinesin motor domain containing protein, putative, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53530 ZOS2-17 - C2H2 zinc finger protein, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53540 retrotransposon protein, putative, unclassified, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53550 retrotransposon protein, putative, unclassified, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53570 DEFL74 - Defensin and Defensin-like DEFL family, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53580 expressed protein FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53590 DEFL71 - Defensin and Defensin-like DEFL family, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53600 DEFL75 - Defensin and Defensin-like DEFL family, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53610 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53620 nuclear transcription factor Y subunit, putative, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53630 retrotransposon protein, putative, unclassified, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53640 retrotransposon protein, putative, unclassified, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53660 expressed protein FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53670 MYB family transcription factor, putative, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53680 RPA1A - Putative single-stranded DNA binding complex subunit 1, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53690 growth regulating factor protein, putative, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53700 DENN domain containing protein, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53710 expressed protein FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53720 phytosulfokine receptor precursor, putative, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53730 expressed protein FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53740 XI-I, putative, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53750 tyrosine protein kinase domain containing protein, putative, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53770 tRNA synthetase class I, putative, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53780 expressed protein FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53790 adenylate kinase, putative, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53800 hypothetical protein FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53810 expressed protein FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53820 endoglucanase, putative, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53830 MTD1, putative, expressed FN2902-S Chr2 32716001 32969000 0 0 Deletion 252999 LOC_Os02g53840 subtilisin N-terminal Region family protein, expressed FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g53850 OsSub21 - Putative Subtilisin homologue, expressed FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g53860 OsSub22 - Putative Subtilisin homologue, expressed FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g53870 expressed protein FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g53880 expressed protein FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g53890 expressed protein FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g53900 expressed protein FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g53910 OsSub23 - Putative Subtilisin homologue, expressed FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g53920 retrotransposon protein, putative, Ty3-gypsy subclass FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g53930 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g53940 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g53950 expressed protein FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g53960 CXE carboxylesterase, putative, expressed FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g53970 OsSub24 - Putative Subtilisin homologue, expressed FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g53990 cyclin-related protein, putative, expressed FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g53994 DUF1771 domain containing protein, putative, expressed FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g54000 mRNA cap guanine-N7 methyltransferase 2, putative, expressed FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g54010 lipase class 3 family protein, putative, expressed FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g54020 DEAD-box ATP-dependent RNA helicase, putative, expressed FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g54030 polygalacturonase, putative, expressed FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g54040 expressed protein FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g54050 ethylene-responsive transcription factor, putative, expressed FN2902-S Chr2 32976001 33119000 0 0 Deletion 142999 LOC_Os02g54060 chaperonin, putative, expressed FN2902-S Chr2 33662187 33662188 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr2 3809114 3809114 0 0 Insertion 2 upstream_gene_variant HET FN2902-S Chr2 7206117 7206118 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr2 8032211 8032263 0 0 Deletion 52 upstream_gene_variant HET FN2902-S Chr2 9395428 9395428 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr3 13466608 13466608 0 0 Insertion 1 intron_variant HET FN2902-S Chr3 13484711 13484711 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr3 14954821 14954821 0 0 Insertion 7 upstream_gene_variant HET FN2902-S Chr3 18918810 18918811 0 0 Deletion 1 downstream_gene_variant HET FN2902-S Chr3 19549550 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2902-S Chr3 19640672 19640672 0 0 Insertion 1 downstream_gene_variant HET FN2902-S Chr3 20930992 20930992 0 0 Insertion 25 upstream_gene_variant HET FN2902-S Chr3 23942107 23942107 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr3 244412 244413 0 0 Deletion 1 intergenic_region HET FN2902-S Chr3 30110474 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g52470 WD domain, G-beta repeat domain containing protein, expressed FN2902-S Chr3 30110475 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2902-S Chr3 30281551 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2902-S Chr3 33127137 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2902-S Chr3 36225829 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2902-S Chr3 7300759 7300759 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr3 7410373 7410374 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr3 7417100 7417100 0 0 Insertion 1 downstream_gene_variant HET FN2902-S Chr4 11483185 11483187 0 0 Deletion 2 intron_variant HET FN2902-S Chr4 12476892 12476892 0 0 Insertion 19 downstream_gene_variant HET FN2902-S Chr4 13979152 13979155 0 0 Deletion 3 downstream_gene_variant HET FN2902-S Chr4 1512165 1512166 0 0 Deletion 1 frameshift_variant HET LOC_Os04g03490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2902-S Chr4 1517315 1517315 0 0 Insertion 5 upstream_gene_variant HET FN2902-S Chr4 16981874 16981877 0 0 Deletion 3 upstream_gene_variant HET FN2902-S Chr4 17143631 17143654 0 0 Deletion 23 upstream_gene_variant HET FN2902-S Chr4 17344299 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g29250 retrotransposon protein, putative, unclassified, expressed FN2902-S Chr4 2316186 2316187 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr4 2627645 2627646 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr4 27580467 27580468 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr4 28358614 28358614 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr4 28684180 28684189 0 0 Deletion 9 intergenic_region HET FN2902-S Chr4 2928416 2928416 0 0 Insertion 1 downstream_gene_variant HET FN2902-S Chr4 33370205 33370212 0 0 Deletion 7 downstream_gene_variant HET FN2902-S Chr4 3502556 3502556 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr4 4254661 4254661 0 0 Insertion 4 upstream_gene_variant HET FN2902-S Chr4 481220 481220 0 0 Insertion 3 upstream_gene_variant HET FN2902-S Chr4 5406611 5406612 0 0 Deletion 1 downstream_gene_variant HET FN2902-S Chr4 7115323 7115324 0 0 Deletion 1 downstream_gene_variant HET FN2902-S Chr4 7717417 7717418 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr4 7992020 7992021 0 0 Deletion 1 frameshift_variant HET LOC_Os04g14260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2902-S Chr4 834836 834928 0 0 Deletion 92 upstream_gene_variant HET FN2902-S Chr5 11965623 11965623 0 0 Insertion 1 downstream_gene_variant HET FN2902-S Chr5 12061939 12061939 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr5 12760956 12760956 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr5 13213863 13213864 0 0 Deletion 1 downstream_gene_variant HET FN2902-S Chr5 14478556 G-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os05g25010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2902-S Chr5 19555300 19555303 0 0 Deletion 3 frameshift_variant HET LOC_Os05g33340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2902-S Chr5 19836715 19836716 0 0 Deletion 1 downstream_gene_variant HET FN2902-S Chr5 19861395 19861396 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr5 21179289 21179297 0 0 Deletion 8 intron_variant HET FN2902-S Chr5 26434154 26434155 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr5 6519464 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2902-S Chr5 8762333 8762333 0 0 Insertion 2 upstream_gene_variant HET FN2902-S Chr6 11908137 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g20660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2902-S Chr6 12159374 12159374 0 0 Insertion 1 downstream_gene_variant HET FN2902-S Chr6 12193521 12193523 0 0 Deletion 2 upstream_gene_variant HET FN2902-S Chr6 1231573 1231592 0 0 Deletion 19 intron_variant HET FN2902-S Chr6 12318935 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g21330 ABB1 - Ankyrin repeat region with 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains, expressed FN2902-S Chr6 17158311 17158399 0 0 Deletion 88 downstream_gene_variant HET FN2902-S Chr6 19445634 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN2902-S Chr6 19660571 19660571 0 0 Insertion 2 upstream_gene_variant HET FN2902-S Chr6 24709465 24709465 0 0 Insertion 5 INTERGENIC HET FN2902-S Chr6 29567003 29567004 0 0 Deletion 1 intergenic_region HET FN2902-S Chr6 329655 329660 0 0 Deletion 5 upstream_gene_variant HET FN2902-S Chr6 525797 525798 0 0 Deletion 1 downstream_gene_variant HET FN2902-S Chr6 7292704 7292704 0 0 Insertion 1 downstream_gene_variant HET FN2902-S Chr6 9640716 9640716 0 0 Insertion 120 upstream_gene_variant HET FN2902-S Chr7 12494672 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2902-S Chr7 12732026 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g22620 retrotransposon protein, putative, unclassified, expressed FN2902-S Chr7 14390833 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g25190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2902-S Chr7 16711509 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g28550 hypothetical protein FN2902-S Chr7 16836657 16836657 0 0 Insertion 1 frameshift_variant&stop_gained HET LOC_Os07g28760 transposon protein, putative, unclassified, expressed FN2902-S Chr7 17480813 17480813 0 0 Insertion 6 disruptive_inframe_insertion HET LOC_Os07g29740 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2902-S Chr7 18984209 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2902-S Chr7 19813789 19813791 0 0 Deletion 2 upstream_gene_variant HET FN2902-S Chr7 19872782 19872782 0 0 Insertion 1 downstream_gene_variant HET FN2902-S Chr7 22131306 22131306 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr7 23017399 23017399 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr7 26760074 26760074 0 0 Insertion 2 upstream_gene_variant HET FN2902-S Chr7 2700685 2700685 0 0 Insertion 1 downstream_gene_variant HET FN2902-S Chr7 27598814 27598814 0 0 Insertion 1 frameshift_variant HET LOC_Os07g46250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2902-S Chr7 4439106 4439107 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr7 7701016 7701016 0 0 Insertion 4 upstream_gene_variant HET FN2902-S Chr8 10015146 10015147 0 0 Deletion 1 downstream_gene_variant HET FN2902-S Chr8 11087948 11087949 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr8 12473139 12473141 0 0 Deletion 2 upstream_gene_variant HET FN2902-S Chr8 13668153 13668156 0 0 Deletion 3 intron_variant HET FN2902-S Chr8 15947151 15947152 0 0 Deletion 1 intergenic_region HET FN2902-S Chr8 1839331 1839331 0 0 Insertion 5 upstream_gene_variant HET FN2902-S Chr8 20422635 20422635 0 0 Insertion 48 upstream_gene_variant HET FN2902-S Chr8 20956960 20956961 0 0 Deletion 1 downstream_gene_variant HET FN2902-S Chr8 21061846 21061847 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr8 2324939 2324945 0 0 Deletion 6 upstream_gene_variant HET FN2902-S Chr8 2449093 2449094 0 0 Deletion 1 downstream_gene_variant HET FN2902-S Chr8 2746184 2746273 0 0 Deletion 89 frameshift_variant HET LOC_Os08g05260 retrotransposon protein, putative, unclassified FN2902-S Chr8 4042424 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2902-S Chr8 6662346 6662347 0 0 Deletion 1 frameshift_variant HET LOC_Os08g11330 retrotransposon protein, putative, unclassified FN2902-S Chr8 6978157 6978157 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr8 6990611 6990611 0 0 Insertion 1 frameshift_variant HET LOC_Os08g11920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2902-S Chr8 7241051 7241051 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr8 7447104 7447104 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr8 8544846 8544854 0 0 Deletion 8 frameshift_variant HET LOC_Os08g14250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2902-S Chr8 8996897 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2902-S Chr9 1026763 1026766 0 0 Deletion 3 upstream_gene_variant HET FN2902-S Chr9 17672213 17672214 0 0 Deletion 1 intron_variant HET FN2902-S Chr9 18082167 18082257 0 0 Deletion 90 upstream_gene_variant HET FN2902-S Chr9 21444889 21444889 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr9 22197421 22197422 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr9 4108787 4108787 0 0 Insertion 1 upstream_gene_variant HET FN2902-S Chr9 4500361 4500384 0 0 Deletion 23 downstream_gene_variant HET FN2902-S Chr9 5973642 C-T 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os09g10890 retrotransposon protein, putative, unclassified, expressed FN2902-S Chr9 794636 794637 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr9 8445795 8445796 0 0 Deletion 1 upstream_gene_variant HET FN2902-S Chr9 9855614 9855633 0 0 Deletion 19 upstream_gene_variant HET