FN2913-S Chr1 14277472 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr1 20060118 20060118 0 0 Insertion 2 INTERGENIC HET FN2913-S Chr1 219753 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2913-S Chr1 22015162 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr1 29264799 29264799 0 0 Insertion 2 INTERGENIC HET FN2913-S Chr1 32290610 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr1 33601470 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os01g58100 polyphenol oxidase, putative, expressed FN2913-S Chr1 34205579 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g59210 retrotransposon protein, putative, unclassified FN2913-S Chr1 41747170 41747170 0 0 Insertion 22 upstream_gene_variant HET FN2913-S Chr1 6822084 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr1 7007100 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2913-S Chr1 8618260 8618282 0 0 Deletion 22 downstream_gene_variant HET FN2913-S Chr10 10472225 10472225 0 0 Insertion 1 downstream_gene_variant HET FN2913-S Chr10 1095243 1095244 0 0 Deletion 1 INTRON HET FN2913-S Chr10 11752806 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr10 11752807 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr10 16347395 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2913-S Chr10 17579261 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr10 7353402 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr11 1004490 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr11 14420728 14420728 0 0 Insertion 1 downstream_gene_variant HET FN2913-S Chr11 15036222 15036222 0 0 Insertion 2 upstream_gene_variant HET FN2913-S Chr11 15092457 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr11 15422684 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g26850 erythronate-4-phosphate dehydrogenase, putative, expressed FN2913-S Chr11 15567450 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr11 1606690 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g03970 CAMK_KIN1/SNF1/Nim1_like.5 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN2913-S Chr11 20656101 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr11 3734783 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g07420 expressed protein FN2913-S Chr11 3734784 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g07420 expressed protein FN2913-S Chr12 10938097 T-G 0 0 Single Base Substitution 0 INTRON HET FN2913-S Chr12 14447736 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr12 14450341 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g25170 NB-ARC domain containing disease resistance protein, putative, expressed FN2913-S Chr12 155921 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2913-S Chr12 15794855 15794855 0 0 Insertion 1 intron_variant HET FN2913-S Chr12 1926211 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g04520 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed FN2913-S Chr12 24400479 24400482 0 0 Deletion 3 CODON_DELETION HET LOC_Os12g39560 expressed protein FN2913-S Chr12 26542586 26542591 0 0 Deletion 5 downstream_gene_variant HET FN2913-S Chr12 9416087 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2913-S Chr12 9425659 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g16460 retrotransposon protein, putative, unclassified, expressed FN2913-S Chr2 18897277 18897285 0 0 Deletion 8 INTERGENIC HOMO FN2913-S Chr2 19712998 19713003 0 0 Deletion 5 INTRON HOMO FN2913-S Chr2 20212545 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2913-S Chr2 22953963 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2913-S Chr2 23044476 23044476 0 0 Insertion 2 INTERGENIC HET FN2913-S Chr2 23289001 23316000 0 0 Deletion 26999 LOC_Os02g38530 retrotransposon protein, putative, unclassified FN2913-S Chr2 23289001 23316000 0 0 Deletion 26999 LOC_Os02g38540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2913-S Chr2 23289001 23316000 0 0 Deletion 26999 LOC_Os02g38550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2913-S Chr2 23289001 23316000 0 0 Deletion 26999 LOC_Os02g38560 retrotransposon protein, putative, unclassified FN2913-S Chr2 23289001 23316000 0 0 Deletion 26999 LOC_Os02g38570 retrotransposon protein, putative, unclassified, expressed FN2913-S Chr2 23289001 23316000 0 0 Deletion 26999 LOC_Os02g39150 expressed protein FN2913-S Chr2 25039943 25039948 0 0 Deletion 5 FRAME_SHIFT HOMO LOC_Os02g41702 retrotransposon protein, putative, unclassified, expressed FN2913-S Chr2 27287986 27287986 0 0 Insertion 1 upstream_gene_variant HET FN2913-S Chr2 30406424 30406426 0 0 Deletion 2 upstream_gene_variant HET FN2913-S Chr2 34282824 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2913-S Chr3 33776417 33776419 0 0 Deletion 2 INTERGENIC HET FN2913-S Chr3 34804556 34804559 0 0 Deletion 3 INTRON HET FN2913-S Chr4 10393348 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2913-S Chr4 15936908 Chr2 15426389 0 Translocation 0 FN2913-S Chr4 17557108 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2913-S Chr4 18372686 A-T 0 0 Single Base Substitution 0 INTRON HET FN2913-S Chr4 2179566 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2913-S Chr4 835071 835071 0 0 Insertion 90 upstream_gene_variant HET FN2913-S Chr5 12517995 12517995 0 0 Insertion 1 intergenic_region HET FN2913-S Chr5 19103284 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr5 19187006 19187696 0 0 Inversion 690 FN2913-S Chr5 20678763 C-A 0 0 Single Base Substitution 0 INTRON HET FN2913-S Chr5 20678764 A-T 0 0 Single Base Substitution 0 INTRON HET FN2913-S Chr5 20678765 C-T 0 0 Single Base Substitution 0 INTRON HET FN2913-S Chr5 426974 426976 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os05g01700 ABC transporter, ATP-binding protein, putative, expressed FN2913-S Chr5 5204404 5204404 0 0 Insertion 1 frameshift_variant HET LOC_Os05g09320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2913-S Chr5 682769 682770 0 0 Deletion 1 upstream_gene_variant HET FN2913-S Chr6 15208263 15208264 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os06g25970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2913-S Chr6 1651043 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2913-S Chr6 17764103 17764104 0 0 Deletion 1 intron_variant HET FN2913-S Chr6 19619211 19619213 0 0 Deletion 2 INTRON HET FN2913-S Chr6 20328262 20328262 0 0 Insertion 1 downstream_gene_variant HET FN2913-S Chr6 27362408 27362408 0 0 Insertion 1 INTERGENIC HOMO FN2913-S Chr7 20320250 20320250 0 0 Insertion 2 INTERGENIC HET FN2913-S Chr7 26386160 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr7 27902147 27902148 0 0 Deletion 1 INTERGENIC HET FN2913-S Chr7 27904643 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g46690 PHD-finger family protein, expressed FN2913-S Chr8 1351271 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g03030 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2913-S Chr8 1442317 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr8 2734550 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g05250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2913-S Chr8 3683591 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2913-S Chr8 6745293 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr9 13061771 13061771 0 0 Insertion 2 INTERGENIC HOMO FN2913-S Chr9 20832425 20832426 0 0 Deletion 1 INTERGENIC HOMO FN2913-S Chr9 4621560 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2913-S Chr9 4887795 4887796 0 0 Deletion 1 INTRON HET FN2913-S Chr9 7150936 7150938 0 0 Deletion 2 INTERGENIC HET