FN2914-S Chr1 12715900 12715901 0 0 Deletion 1 intergenic_region HET FN2914-S Chr1 14365158 14365160 0 0 Deletion 2 upstream_gene_variant HET FN2914-S Chr1 18464457 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN2914-S Chr1 19749098 19749098 0 0 Insertion 1 upstream_gene_variant HET FN2914-S Chr1 2238991 2238999 0 0 Deletion 8 INTERGENIC HOMO FN2914-S Chr1 22563805 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2914-S Chr1 32014869 32014874 0 0 Deletion 5 FRAME_SHIFT HET LOC_Os01g55570 expressed protein FN2914-S Chr1 35339401 35339401 0 0 Insertion 28 intergenic_region HET FN2914-S Chr1 43081133 43081133 0 0 Insertion 1 upstream_gene_variant HET FN2914-S Chr10 12646516 T-C 0 0 Single Base Substitution 0 INTRON HET FN2914-S Chr10 14007456 14007456 0 0 Insertion 1 downstream_gene_variant HET FN2914-S Chr10 1675732 1675732 0 0 Insertion 37 upstream_gene_variant HET FN2914-S Chr10 19218738 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2914-S Chr10 528885 528892 0 0 Deletion 7 INTERGENIC HET FN2914-S Chr11 12616298 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2914-S Chr11 12909654 Chr9 3993747 0 Translocation 0 FN2914-S Chr11 14306669 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2914-S Chr11 15071087 15071087 0 0 Insertion 1 upstream_gene_variant HET FN2914-S Chr11 17706272 17706275 0 0 Deletion 3 upstream_gene_variant HET FN2914-S Chr11 24994393 Chr4 17873076 0 Translocation 0 FN2914-S Chr11 26112826 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2914-S Chr11 4886885 4886886 0 0 Deletion 1 intergenic_region HET FN2914-S Chr11 8554777 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2914-S Chr12 11710810 11710810 0 0 Insertion 1 upstream_gene_variant HET FN2914-S Chr12 16652317 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g28200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2914-S Chr12 21092116 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2914-S Chr12 3831401 3831401 0 0 Insertion 2 intron_variant HET FN2914-S Chr2 12245173 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2914-S Chr2 1617243 1617245 0 0 Deletion 2 INTERGENIC HOMO FN2914-S Chr2 16471286 16471286 0 0 Insertion 72 upstream_gene_variant HET FN2914-S Chr2 18465160 18465160 0 0 Insertion 6 INTERGENIC HET FN2914-S Chr2 19212627 19212634 0 0 Deletion 7 FRAME_SHIFT HOMO LOC_Os02g32480 expressed protein FN2914-S Chr2 33462904 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2914-S Chr2 7522138 7522140 0 0 Deletion 2 upstream_gene_variant HET FN2914-S Chr2 8102631 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2914-S Chr3 13150959 13150962 0 0 Deletion 3 INTERGENIC HOMO FN2914-S Chr3 13151006 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2914-S Chr3 13559330 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2914-S Chr3 14313676 14313680 0 0 Deletion 4 INTERGENIC HOMO FN2914-S Chr3 18488332 G-C 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2914-S Chr3 18488333 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2914-S Chr3 20142339 20142340 0 0 Deletion 1 upstream_gene_variant HET FN2914-S Chr3 22172838 T-G 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2914-S Chr3 34367057 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2914-S Chr3 34467223 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2914-S Chr3 9118757 9118759 0 0 Deletion 2 upstream_gene_variant HET FN2914-S Chr4 10578278 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2914-S Chr4 16853862 G-A 0 0 Single Base Substitution 0 INTRON HET FN2914-S Chr4 18303803 18303804 0 0 Deletion 1 downstream_gene_variant HET FN2914-S Chr4 21054826 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2914-S Chr4 28831824 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2914-S Chr4 3002231 G-C 0 0 Single Base Substitution 0 INTRON HOMO FN2914-S Chr4 34057180 34057185 0 0 Deletion 5 INTRON HET FN2914-S Chr4 34077584 34077589 0 0 Deletion 5 INTERGENIC HET FN2914-S Chr4 3636525 3636526 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os04g06900 expressed protein FN2914-S Chr4 8934072 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2914-S Chr5 10007414 10007414 0 0 Insertion 1 upstream_gene_variant HET FN2914-S Chr5 11748111 G-A 0 0 Single Base Substitution 0 INTRON HET FN2914-S Chr5 15547178 15547179 0 0 Deletion 1 downstream_gene_variant HET FN2914-S Chr5 21687528 21687533 0 0 Deletion 5 FRAME_SHIFT HET LOC_Os05g37100 retrotransposon protein, putative, unclassified, expressed FN2914-S Chr5 29411022 29411023 0 0 Deletion 1 upstream_gene_variant HET FN2914-S Chr5 2949906 2949907 0 0 Deletion 1 upstream_gene_variant HET FN2914-S Chr6 17425811 T-G 0 0 Single Base Substitution 0 INTRON HET FN2914-S Chr6 18053328 18053328 0 0 Insertion 1 upstream_gene_variant HET FN2914-S Chr6 19800569 20588789 0 0 Inversion 788220 FN2914-S Chr6 19800575 20588797 0 0 Inversion 788222 FN2914-S Chr6 7638013 7638018 0 0 Deletion 5 upstream_gene_variant HET FN2914-S Chr7 11178152 G-A 0 0 Single Base Substitution 0 INTRON HET FN2914-S Chr7 1463122 1463123 0 0 Deletion 1 frameshift_variant HET LOC_Os07g03630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2914-S Chr7 1706564 Chr2 35082576 0 Translocation 0 FN2914-S Chr7 24191205 24191206 0 0 Deletion 1 downstream_gene_variant HET FN2914-S Chr7 28604370 28604370 0 0 Insertion 1 upstream_gene_variant HET FN2914-S Chr7 7819269 7819270 0 0 Deletion 1 intron_variant HET FN2914-S Chr7 8541666 C-G 0 0 Single Base Substitution 0 INTRON HET FN2914-S Chr8 13239555 Chr4 3609435 0 Translocation 0 LOC_Os04g06850 expressed protein FN2914-S Chr8 13644392 13644392 0 0 Insertion 46 downstream_gene_variant HET FN2914-S Chr8 16049363 Chr4 13175658 0 Translocation 0 FN2914-S Chr8 16603860 16603862 0 0 Deletion 2 intron_variant HET FN2914-S Chr8 17564703 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2914-S Chr8 18582591 18582591 0 0 Insertion 75 downstream_gene_variant HET FN2914-S Chr8 20468309 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2914-S Chr8 20613841 20613933 0 0 Deletion 92 intergenic_region HET FN2914-S Chr8 24362510 24362510 0 0 Insertion 1 upstream_gene_variant HET FN2914-S Chr8 25593042 25593043 0 0 Deletion 1 UTR_5_PRIME HET FN2914-S Chr8 6084507 6084508 0 0 Deletion 1 upstream_gene_variant HET FN2914-S Chr9 15545377 15545377 0 0 Insertion 2 downstream_gene_variant HET FN2914-S Chr9 17258247 17258247 0 0 Insertion 1 upstream_gene_variant HET FN2914-S Chr9 19861713 19861714 0 0 Deletion 1 INTERGENIC HOMO FN2914-S Chr9 22635926 C-T 0 0 Single Base Substitution 0 START_GAINED HOMO FN2914-S Chr9 234516 234576 0 0 Deletion 60 disruptive_inframe_deletion HET LOC_Os09g01270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2914-S Chr9 8926244 8926245 0 0 Deletion 1 intergenic_region HET FN2914-S Chr9 9165435 9165525 0 0 Deletion 90 intergenic_region HET