FN2915-S Chr1 12951080 12951080 0 0 Insertion 1 intron_variant HET FN2915-S Chr1 13467976 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2915-S Chr1 14555024 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2915-S Chr1 18239425 18239425 0 0 Insertion 42 upstream_gene_variant HET FN2915-S Chr1 19662054 19662054 0 0 Insertion 1 frameshift_variant HET LOC_Os01g35540 retrotransposon protein, putative, unclassified FN2915-S Chr1 19750952 19750952 0 0 Insertion 1 downstream_gene_variant HET FN2915-S Chr1 2003162 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2915-S Chr1 4818864 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2915-S Chr10 15778319 15778325 0 0 Deletion 6 INTERGENIC HOMO FN2915-S Chr10 1636411 Chr2 30232419 0 Translocation 0 LOC_Os02g49470 tic20 protein-related, putative, expressed FN2915-S Chr10 22184576 22184577 0 0 Deletion 1 upstream_gene_variant HET FN2915-S Chr10 22711146 22711148 0 0 Deletion 2 upstream_gene_variant HET FN2915-S Chr10 43573 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2915-S Chr10 446549 446549 0 0 Insertion 81 upstream_gene_variant HET FN2915-S Chr10 6813422 6813422 0 0 Insertion 1 upstream_gene_variant HET FN2915-S Chr10 6813422 6813422 0 0 Insertion 3 upstream_gene_variant HET FN2915-S Chr11 10321341 Chr1 16146429 0 Translocation 0 FN2915-S Chr11 11179822 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2915-S Chr11 13001538 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2915-S Chr11 20236026 20236027 0 0 Deletion 1 upstream_gene_variant HET FN2915-S Chr11 20594242 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2915-S Chr11 20630907 20630907 0 0 Insertion 1 upstream_gene_variant HET FN2915-S Chr11 24976377 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g41620 transposon protein, putative, unclassified, expressed FN2915-S Chr11 26018496 26018497 0 0 Deletion 1 upstream_gene_variant HET FN2915-S Chr11 27701516 Chr4 33337463 0 Translocation 0 LOC_Os11g45780 RGH2B, putative, expressed FN2915-S Chr11 5607892 5607892 0 0 Insertion 31 upstream_gene_variant HET FN2915-S Chr11 9364480 9364481 0 0 Deletion 1 downstream_gene_variant HET FN2915-S Chr12 11126523 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2915-S Chr12 13615286 13615296 0 0 Deletion 10 INTERGENIC HET FN2915-S Chr12 17891911 17891917 0 0 Deletion 6 upstream_gene_variant HET FN2915-S Chr12 18715864 18715864 0 0 Insertion 1 downstream_gene_variant HET FN2915-S Chr12 22729636 Chr1 17724540 0 Translocation 0 FN2915-S Chr12 23989620 23989620 0 0 Insertion 128 upstream_gene_variant HET FN2915-S Chr12 3766431 Chr11 17795276 0 Translocation 0 FN2915-S Chr12 9727108 9727137 0 0 Deletion 29 frameshift_variant HET LOC_Os12g16990 expressed protein FN2915-S Chr2 10331673 10331685 0 0 Deletion 12 intron_variant HET FN2915-S Chr2 17255058 17255080 0 0 Deletion 22 INTERGENIC HOMO FN2915-S Chr2 20180581 20180583 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os02g33850 elongation factor Tu family protein, putative, expressed FN2915-S Chr2 21359229 21359230 0 0 Deletion 1 downstream_gene_variant HET FN2915-S Chr2 21634346 21634347 0 0 Deletion 1 upstream_gene_variant HET FN2915-S Chr2 21727130 21727174 0 0 Deletion 44 frameshift_variant HET LOC_Os02g36100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2915-S Chr2 22812228 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2915-S Chr2 23317491 23317491 0 0 Insertion 1 upstream_gene_variant HET FN2915-S Chr2 23351742 23351744 0 0 Deletion 2 upstream_gene_variant HET FN2915-S Chr2 27584406 27584407 0 0 Deletion 1 upstream_gene_variant HET FN2915-S Chr2 29411754 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2915-S Chr2 32791408 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2915-S Chr2 4003538 G-A 0 0 Single Base Substitution 0 INTRON HET FN2915-S Chr2 9406033 9406033 0 0 Insertion 1 upstream_gene_variant HET FN2915-S Chr3 15721256 15721256 0 0 Insertion 8 downstream_gene_variant HET FN2915-S Chr3 21437628 21437634 0 0 Deletion 6 INTERGENIC HET FN2915-S Chr3 26412057 26412065 0 0 Deletion 8 upstream_gene_variant HET FN2915-S Chr3 30434909 30434909 0 0 Insertion 10 INTERGENIC HET FN2915-S Chr3 31101484 31101498 0 0 Deletion 14 downstream_gene_variant HET FN2915-S Chr3 33382850 33382853 0 0 Deletion 3 upstream_gene_variant HET FN2915-S Chr3 9057881 9057881 0 0 Insertion 1 upstream_gene_variant HET FN2915-S Chr3 9690927 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2915-S Chr4 11151848 11151848 0 0 Insertion 1 upstream_gene_variant HET FN2915-S Chr4 11843784 11843785 0 0 Deletion 1 upstream_gene_variant HET FN2915-S Chr4 14419155 14419156 0 0 Deletion 1 downstream_gene_variant HET FN2915-S Chr4 17940185 Chr2 13401460 0 Translocation 0 LOC_Os04g30040 jacalin-like lectin domain containing protein, expressed FN2915-S Chr4 19357629 19357630 0 0 Deletion 1 downstream_gene_variant HET FN2915-S Chr4 3005806 3005807 0 0 Deletion 1 upstream_gene_variant HET FN2915-S Chr5 11580365 11580365 0 0 Insertion 1 upstream_gene_variant HET FN2915-S Chr5 16961975 Chr2 2674024 0 Translocation 0 FN2915-S Chr5 20891404 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g35180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2915-S Chr5 5669206 5669221 0 0 Deletion 15 upstream_gene_variant HET FN2915-S Chr6 13938453 13938455 0 0 Deletion 2 downstream_gene_variant HET FN2915-S Chr6 19388027 19388040 0 0 Deletion 13 FRAME_SHIFT HOMO LOC_Os06g33300 retrotransposon protein, putative, unclassified, expressed FN2915-S Chr6 21475103 21475104 0 0 Deletion 1 upstream_gene_variant HET FN2915-S Chr6 22901228 22901228 0 0 Insertion 2 downstream_gene_variant HET FN2915-S Chr6 24649863 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2915-S Chr7 13226920 13226929 0 0 Deletion 9 inframe_deletion HET LOC_Os07g23440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2915-S Chr7 16490105 16490105 0 0 Insertion 41 upstream_gene_variant HET FN2915-S Chr7 17078006 17078006 0 0 Insertion 1 upstream_gene_variant HET FN2915-S Chr7 17261227 Chr4 8718617 0 Translocation 0 FN2915-S Chr7 18226425 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2915-S Chr7 2189604 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2915-S Chr7 23953558 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g39930 expressed protein FN2915-S Chr7 7585392 Chr4 31353968 0 Translocation 0 FN2915-S Chr7 8557417 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2915-S Chr7 9870758 9870759 0 0 Deletion 1 intron_variant HET FN2915-S Chr8 12640906 12640906 0 0 Insertion 71 upstream_gene_variant HET FN2915-S Chr8 14851515 14851515 0 0 Insertion 1 upstream_gene_variant HET FN2915-S Chr8 16645586 16645586 0 0 Insertion 4 upstream_gene_variant HET FN2915-S Chr8 18976745 18976745 0 0 Insertion 1 upstream_gene_variant HET FN2915-S Chr8 21374070 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g34090 retrotransposon protein, putative, unclassified, expressed FN2915-S Chr8 22509008 22509009 0 0 Deletion 1 intron_variant HET FN2915-S Chr8 22787352 22787352 0 0 Insertion 1 intron_variant HET FN2915-S Chr8 25231852 25231852 0 0 Insertion 1 intergenic_region HET FN2915-S Chr8 6514991 6514991 0 0 Insertion 1 upstream_gene_variant HET FN2915-S Chr9 133423 133423 0 0 Insertion 1 upstream_gene_variant HET FN2915-S Chr9 14170591 14170594 0 0 Deletion 3 INTERGENIC HET FN2915-S Chr9 17916173 17916178 0 0 Deletion 5 INTERGENIC HET FN2915-S Chr9 19195951 Chr8 3980328 0 Translocation 0 LOC_Os09g32169 expressed protein FN2915-S Chr9 2202955 Chr3 25665901 0 Translocation 0 FN2915-S Chr9 4844295 4844295 0 0 Insertion 1 downstream_gene_variant HET