FN2917-S Chr1 13685405 13685406 0 0 Deletion 1 intron_variant HET FN2917-S Chr1 13873512 13873513 0 0 Deletion 1 frameshift_variant HET LOC_Os01g24630 transposon protein, putative, unclassified, expressed FN2917-S Chr1 17191145 17191149 0 0 Deletion 4 upstream_gene_variant HET FN2917-S Chr1 19047496 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2917-S Chr1 19747231 19747231 0 0 Insertion 1 upstream_gene_variant HET FN2917-S Chr1 20160708 20160708 0 0 Insertion 2 upstream_gene_variant HET FN2917-S Chr1 21773430 21773430 0 0 Insertion 93 upstream_gene_variant HET FN2917-S Chr1 26965292 26965292 0 0 Insertion 1 frameshift_variant HET LOC_Os01g47170 retrotransposon protein, putative, unclassified, expressed FN2917-S Chr1 29079122 29079123 0 0 Deletion 1 upstream_gene_variant HET FN2917-S Chr1 36978345 36978346 0 0 Deletion 1 upstream_gene_variant HET FN2917-S Chr1 40886568 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g70630 retrotransposon protein, putative, unclassified, expressed FN2917-S Chr10 10247262 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2917-S Chr10 10247269 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2917-S Chr10 11399163 11399173 0 0 Deletion 10 upstream_gene_variant HET FN2917-S Chr10 11499267 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2917-S Chr10 11499268 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2917-S Chr10 14080903 14080905 0 0 Deletion 2 frameshift_variant HET LOC_Os10g26830 retrotransposon protein, putative, unclassified, expressed FN2917-S Chr10 19418877 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2917-S Chr10 22897618 22897630 0 0 Deletion 12 inframe_deletion HET LOC_Os10g42470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2917-S Chr10 5082916 5082917 0 0 Deletion 1 upstream_gene_variant HET FN2917-S Chr10 5149235 Chr4 3713485 0 Translocation 0 FN2917-S Chr10 6444457 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g11672 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2917-S Chr11 11162728 11179913 0 0 Inversion 17185 LOC_Os11g19410 retrotransposon protein, putative, Ty3-gypsy subclass FN2917-S Chr11 4800079 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g09020 amino acid transporter, putative, expressed FN2917-S Chr11 588505 588505 0 0 Insertion 1 upstream_gene_variant HET FN2917-S Chr12 10087160 10087160 0 0 Insertion 14 upstream_gene_variant HET FN2917-S Chr12 12748236 12748262 0 0 Deletion 26 frameshift_variant HET LOC_Os12g22590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2917-S Chr12 15374673 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2917-S Chr12 15374675 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g26330 expressed protein FN2917-S Chr12 19010696 19010696 0 0 Insertion 4 downstream_gene_variant HET FN2917-S Chr12 208039 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2917-S Chr12 24691399 24691399 0 0 Insertion 1 frameshift_variant&stop_gained HET LOC_Os12g39950 expressed protein FN2917-S Chr12 26036133 26036133 0 0 Insertion 15 upstream_gene_variant HET FN2917-S Chr12 27001600 Chr2 10461264 0 Translocation 0 LOC_Os12g43520 cbbY protein-related, putative, expressed FN2917-S Chr12 4460857 Chr11 11162723 0 Translocation 0 LOC_Os11g19410 retrotransposon protein, putative, Ty3-gypsy subclass FN2917-S Chr12 4461199 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2917-S Chr12 4463037 Chr11 11179908 0 Translocation 0 LOC_Os12g08730 thioredoxin, putative, expressed FN2917-S Chr12 7118372 Chr4 12181 0 Translocation 0 FN2917-S Chr12 8132712 8132716 0 0 Deletion 4 upstream_gene_variant HET FN2917-S Chr12 8453895 8453895 0 0 Insertion 2 upstream_gene_variant HET FN2917-S Chr12 8978787 8978787 0 0 Insertion 13 upstream_gene_variant HET FN2917-S Chr2 19697533 19697533 0 0 Insertion 1 intergenic_region HET FN2917-S Chr2 22590980 22590993 0 0 Deletion 13 INTERGENIC HET FN2917-S Chr2 23351769 23351769 0 0 Insertion 1 upstream_gene_variant HET FN2917-S Chr2 23855741 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2917-S Chr2 28771736 28771737 0 0 Deletion 1 UTR_3_PRIME HET FN2917-S Chr2 313894 313895 0 0 Deletion 1 INTRON HOMO FN2917-S Chr2 3220693 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2917-S Chr2 35472849 35472849 0 0 Insertion 1 downstream_gene_variant HET FN2917-S Chr2 355115 355116 0 0 Deletion 1 upstream_gene_variant HET FN2917-S Chr2 3861856 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN2917-S Chr2 5464946 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2917-S Chr3 11401979 11401980 0 0 Deletion 1 upstream_gene_variant HET FN2917-S Chr3 15138760 15138760 0 0 Insertion 18 inframe_insertion HET LOC_Os03g26510 hypothetical protein FN2917-S Chr3 21257699 21257701 0 0 Deletion 2 upstream_gene_variant HET FN2917-S Chr3 2191898 2191899 0 0 Deletion 1 intergenic_region HET FN2917-S Chr3 22522408 22522408 0 0 Insertion 1 upstream_gene_variant HET FN2917-S Chr3 8316941 8316941 0 0 Insertion 1 upstream_gene_variant HET FN2917-S Chr3 9321555 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2917-S Chr4 14333895 14333895 0 0 Insertion 5 frameshift_variant HET LOC_Os04g24880 retrotransposon protein, putative, unclassified, expressed FN2917-S Chr4 15983501 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2917-S Chr4 16721013 16721013 0 0 Insertion 1 intergenic_region HET FN2917-S Chr4 2620777 2620777 0 0 Insertion 2 upstream_gene_variant HET FN2917-S Chr4 34006548 Chr1 9105820 0 Translocation 0 FN2917-S Chr4 5434473 5434474 0 0 Deletion 1 upstream_gene_variant HET FN2917-S Chr4 7412627 7412627 0 0 Insertion 1 upstream_gene_variant HET FN2917-S Chr5 10287749 10287749 0 0 Insertion 1 upstream_gene_variant HET FN2917-S Chr5 12302079 12302079 0 0 Insertion 58 downstream_gene_variant HET FN2917-S Chr5 12724764 12724765 0 0 Deletion 1 upstream_gene_variant HET FN2917-S Chr5 15040106 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2917-S Chr5 15316692 15316693 0 0 Deletion 1 upstream_gene_variant HET FN2917-S Chr5 17121425 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2917-S Chr5 1796768 C-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2917-S Chr5 19490627 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2917-S Chr5 20484444 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2917-S Chr5 21969112 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2917-S Chr5 2232935 2232940 0 0 Deletion 5 upstream_gene_variant HET FN2917-S Chr5 24882841 24882841 0 0 Insertion 25 intergenic_region HET FN2917-S Chr5 25597096 25597097 0 0 Deletion 1 upstream_gene_variant HET FN2917-S Chr5 8931354 Chr4 20321644 0 Translocation 0 FN2917-S Chr5 8931368 Chr4 20323792 0 Translocation 0 FN2917-S Chr5 9017197 9017209 0 0 Deletion 12 disruptive_inframe_deletion HET LOC_Os05g15970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2917-S Chr5 9807789 9807789 0 0 Insertion 1 upstream_gene_variant HET FN2917-S Chr6 12100724 12100726 0 0 Deletion 2 upstream_gene_variant HET FN2917-S Chr6 13225365 13225365 0 0 Insertion 4 upstream_gene_variant HET FN2917-S Chr6 1327499 1327500 0 0 Deletion 1 downstream_gene_variant HET FN2917-S Chr6 17022414 Chr2 8917810 0 Translocation 0 FN2917-S Chr6 20224268 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g34790 DUF538 domain containing protein, putative, expressed FN2917-S Chr6 24603847 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2917-S Chr6 26919526 26919526 0 0 Insertion 1 upstream_gene_variant HET FN2917-S Chr6 4802 4802 0 0 Insertion 1 upstream_gene_variant HET FN2917-S Chr6 6873098 6873107 0 0 Deletion 9 downstream_gene_variant HET FN2917-S Chr6 7521340 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2917-S Chr7 10473753 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2917-S Chr7 11139930 11139930 0 0 Insertion 75 upstream_gene_variant HET FN2917-S Chr7 15967538 15967538 0 0 Insertion 1 upstream_gene_variant HET FN2917-S Chr7 17644250 17644250 0 0 Insertion 87 upstream_gene_variant HET FN2917-S Chr7 22220441 22220446 0 0 Deletion 5 INTERGENIC HET FN2917-S Chr7 3657554 3657554 0 0 Insertion 3 upstream_gene_variant HET FN2917-S Chr7 6398359 6398376 0 0 Deletion 17 upstream_gene_variant HET FN2917-S Chr7 7822357 7822357 0 0 Insertion 1 intron_variant HET FN2917-S Chr8 10547302 10547303 0 0 Deletion 1 upstream_gene_variant HET FN2917-S Chr8 19173473 19173475 0 0 Deletion 2 INTERGENIC HET FN2917-S Chr8 21091205 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g33750 myb-like DNA-binding domain containing protein, expressed FN2917-S Chr8 22769881 22769881 0 0 Insertion 2 upstream_gene_variant HET FN2917-S Chr8 25143134 Chr4 3640802 0 Translocation 0 FN2917-S Chr8 2753749 2753838 0 0 Deletion 89 upstream_gene_variant HET FN2917-S Chr8 3235409 3235409 0 0 Insertion 10 downstream_gene_variant HET FN2917-S Chr8 6938497 6938539 0 0 Deletion 42 upstream_gene_variant HET FN2917-S Chr8 7089980 Chr4 2989030 0 Translocation 0 FN2917-S Chr8 9335065 Chr6 30966718 0 Translocation 0 FN2917-S Chr8 9540762 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2917-S Chr9 3192104 3192120 0 0 Deletion 16 frameshift_variant HET LOC_Os09g06710 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2917-S Chr9 5356330 G-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os09g09860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2917-S Chr9 6735634 G-C 0 0 Single Base Substitution 0 INTERGENIC HET