FN2918-S Chr1 10477962 A-C 0 0 Single Base Substitution 0 INTRON HET FN2918-S Chr1 11017001 11041000 0 0 Deletion 23999 LOC_Os01g19470 nodal modulator 1 precursor, putative, expressed FN2918-S Chr1 11017001 11041000 0 0 Deletion 23999 LOC_Os01g19640 retrotransposon protein, putative, Ty3-gypsy subclass FN2918-S Chr1 11489604 11489605 0 0 Deletion 1 upstream_gene_variant HET FN2918-S Chr1 13194366 13194366 0 0 Insertion 103 downstream_gene_variant HET FN2918-S Chr1 13546364 13546494 0 0 Deletion 130 splice_donor_variant&inframe_deletion&splice_region_variant&intron_variant HET LOC_Os01g24040 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2918-S Chr1 16262872 16262872 0 0 Insertion 55 frameshift_variant&stop_gained HET LOC_Os01g29050 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr1 16789293 16789293 0 0 Insertion 4 intergenic_region HET FN2918-S Chr1 1824818 1824818 0 0 Insertion 3 upstream_gene_variant HET FN2918-S Chr1 19414001 19440000 0 0 Deletion 25999 LOC_Os01g35070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr1 19414001 19440000 0 0 Deletion 25999 LOC_Os01g35080 retrotransposon protein, putative, unclassified FN2918-S Chr1 19414001 19440000 0 0 Deletion 25999 LOC_Os01g35090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr1 19414001 19440000 0 0 Deletion 25999 LOC_Os01g35100 zinc finger, C3HC4 type domain containing protein, expressed FN2918-S Chr1 19414001 19440000 0 0 Deletion 25999 LOC_Os01g35110 expressed protein FN2918-S Chr1 19414001 19440000 0 0 Deletion 25999 LOC_Os01g35120 zinc finger, C3HC4 type domain containing protein, expressed FN2918-S Chr1 19594421 19594421 0 0 Insertion 2 downstream_gene_variant HET FN2918-S Chr1 19790101 19790101 0 0 Insertion 2 upstream_gene_variant HET FN2918-S Chr1 19801449 19801449 0 0 Insertion 2 upstream_gene_variant HET FN2918-S Chr1 20200001 20241000 0 0 Deletion 40999 LOC_Os01g36410 expressed protein FN2918-S Chr1 20200001 20241000 0 0 Deletion 40999 LOC_Os01g36420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr1 20200001 20241000 0 0 Deletion 40999 LOC_Os01g36430 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr1 20200001 20241000 0 0 Deletion 40999 LOC_Os01g36440 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr1 20200001 20241000 0 0 Deletion 40999 LOC_Os01g36450 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr1 20200001 20241000 0 0 Deletion 40999 LOC_Os01g36460 MYB family transcription factor, putative, expressed FN2918-S Chr1 20200001 20241000 0 0 Deletion 40999 LOC_Os01g36760 expressed protein FN2918-S Chr1 22142001 22176000 0 0 Deletion 33999 LOC_Os01g39340 expressed protein FN2918-S Chr1 22142001 22176000 0 0 Deletion 33999 LOC_Os01g39350 protein kinase domain containing protein, expressed FN2918-S Chr1 22142001 22176000 0 0 Deletion 33999 LOC_Os01g39360 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr1 22142001 22176000 0 0 Deletion 33999 LOC_Os01g39370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr1 22142001 22176000 0 0 Deletion 33999 LOC_Os01g39380 SCD1, putative, expressed FN2918-S Chr1 27002352 27002352 0 0 Insertion 4 upstream_gene_variant HET FN2918-S Chr1 29209265 29209270 0 0 Deletion 5 FRAME_SHIFT HOMO LOC_Os01g50849 expressed protein FN2918-S Chr1 32858001 32873000 0 0 Deletion 14999 LOC_Os01g56900 expressed protein FN2918-S Chr1 32858001 32873000 0 0 Deletion 14999 LOC_Os01g56910 expressed protein FN2918-S Chr1 35875545 35875638 0 0 Deletion 93 upstream_gene_variant HET FN2918-S Chr1 36806067 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2918-S Chr1 41263001 41295000 0 0 Deletion 31999 LOC_Os01g71640 expressed protein FN2918-S Chr1 5188001 5199000 0 0 Deletion 10999 LOC_Os01g09980 expressed protein FN2918-S Chr1 5188001 5199000 0 0 Deletion 10999 LOC_Os01g10700 D-mannose binding lectin family protein, expressed FN2918-S Chr1 8469124 8469166 0 0 Deletion 42 downstream_gene_variant HET FN2918-S Chr10 10547429 Chr1 10173686 0 Translocation 0 FN2918-S Chr10 1399960 1399960 0 0 Insertion 1 upstream_gene_variant HET FN2918-S Chr10 14607430 C-A 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN2918-S Chr10 2406001 2432000 0 0 Deletion 25999 LOC_Os10g04940 hypothetical protein FN2918-S Chr10 2406001 2432000 0 0 Deletion 25999 LOC_Os10g04950 hypothetical protein FN2918-S Chr10 2406001 2432000 0 0 Deletion 25999 LOC_Os10g04960 expressed protein FN2918-S Chr10 2406001 2432000 0 0 Deletion 25999 LOC_Os10g04980 OsFBX365 - F-box domain containing protein, expressed FN2918-S Chr10 2406001 2432000 0 0 Deletion 25999 LOC_Os10g04990 expressed protein FN2918-S Chr10 2406001 2432000 0 0 Deletion 25999 LOC_Os10g05520 OsFBX371 - F-box domain containing protein, expressed FN2918-S Chr10 2966129 2966130 0 0 Deletion 1 downstream_gene_variant HET FN2918-S Chr10 3283221 3283222 0 0 Deletion 1 upstream_gene_variant HET FN2918-S Chr10 3409001 3438000 0 0 Deletion 28999 LOC_Os10g06620 hypothetical protein FN2918-S Chr10 3409001 3438000 0 0 Deletion 28999 LOC_Os10g06990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr10 3558676 3558677 0 0 Deletion 1 frameshift_variant HET LOC_Os10g06820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr10 5102176 5102177 0 0 Deletion 1 intron_variant HET FN2918-S Chr10 6200001 6219000 0 0 Deletion 18999 LOC_Os10g11200 aminotransferase, classes I and II, domain containing protein, expressed FN2918-S Chr10 6200001 6219000 0 0 Deletion 18999 LOC_Os10g11210 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr10 6200001 6219000 0 0 Deletion 18999 LOC_Os10g11330 transposon protein, putative, unclassified FN2918-S Chr10 7281001 7319000 0 0 Deletion 37999 LOC_Os10g13490 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr10 7281001 7319000 0 0 Deletion 37999 LOC_Os10g13500 expressed protein FN2918-S Chr10 7281001 7319000 0 0 Deletion 37999 LOC_Os10g13505 expressed protein FN2918-S Chr10 7281001 7319000 0 0 Deletion 37999 LOC_Os10g13510 transposable element protein, putative, containing Pfam profile: PF03108, MuDR, expressed FN2918-S Chr10 8223037 8223037 0 0 Insertion 1 downstream_gene_variant HET FN2918-S Chr11 1061001 1109000 0 0 Deletion 47999 LOC_Os11g03050 cytidylyltransferase domain containing protein, expressed FN2918-S Chr11 1061001 1109000 0 0 Deletion 47999 LOC_Os11g03060 SNF7 domain containing protein, putative, expressed FN2918-S Chr11 1061001 1109000 0 0 Deletion 47999 LOC_Os11g03070 ATCHX, putative, expressed FN2918-S Chr11 1061001 1109000 0 0 Deletion 47999 LOC_Os11g03080 hypothetical protein FN2918-S Chr11 1061001 1109000 0 0 Deletion 47999 LOC_Os11g03090 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr11 1061001 1109000 0 0 Deletion 47999 LOC_Os11g03100 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr11 1061001 1109000 0 0 Deletion 47999 LOC_Os11g03270 nucleoside-triphosphatase, putative, expressed FN2918-S Chr11 10663001 10691000 0 0 Deletion 27999 LOC_Os11g18800 retrotransposon protein, putative, unclassified FN2918-S Chr11 10663001 10691000 0 0 Deletion 27999 LOC_Os11g18810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr11 10663001 10691000 0 0 Deletion 27999 LOC_Os11g18820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr11 10663001 10691000 0 0 Deletion 27999 LOC_Os11g19000 transposon protein, putative, CACTA, En/Spm sub-class FN2918-S Chr11 11463634 T-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2918-S Chr11 12096620 12096620 0 0 Insertion 80 intergenic_region HET FN2918-S Chr11 12115927 12115951 0 0 Deletion 24 intergenic_region HET FN2918-S Chr11 1455798 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g03730 alpha-N-arabinofuranosidase A, putative, expressed FN2918-S Chr11 1455800 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g03730 alpha-N-arabinofuranosidase A, putative, expressed FN2918-S Chr11 1455801 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g03730 alpha-N-arabinofuranosidase A, putative, expressed FN2918-S Chr11 15036076 15036076 0 0 Insertion 1 upstream_gene_variant HET FN2918-S Chr11 15041320 15041320 0 0 Insertion 1 downstream_gene_variant HET FN2918-S Chr11 15099566 15099571 0 0 Deletion 5 downstream_gene_variant HET FN2918-S Chr11 15468001 15491000 0 0 Deletion 22999 LOC_Os11g26930 expressed protein FN2918-S Chr11 15468001 15491000 0 0 Deletion 22999 LOC_Os11g27170 OsSCP58 - Putative Serine Carboxypeptidase homologue, expressed FN2918-S Chr11 16599001 16635000 0 0 Deletion 35999 LOC_Os11g28720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr11 16599001 16635000 0 0 Deletion 35999 LOC_Os11g28730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr11 16599001 16635000 0 0 Deletion 35999 LOC_Os11g29014 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr11 1750805 1750808 0 0 Deletion 3 INTERGENIC HOMO FN2918-S Chr11 19748567 Chr6 5893169 0 Translocation 0 FN2918-S Chr11 21082001 21114000 0 0 Deletion 31999 LOC_Os11g35900 hypothetical protein FN2918-S Chr11 21082001 21114000 0 0 Deletion 31999 LOC_Os11g35910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr11 21082001 21114000 0 0 Deletion 31999 LOC_Os11g35920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr11 21082001 21114000 0 0 Deletion 31999 LOC_Os11g35930 chalcone synthase, putative, expressed FN2918-S Chr11 21082001 21114000 0 0 Deletion 31999 LOC_Os11g35940 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr11 21263663 21263670 0 0 Deletion 7 FRAME_SHIFT HOMO LOC_Os11g36160 receptor-like protein kinase 2 precursor, putative, expressed FN2918-S Chr11 25413001 25430000 0 0 Deletion 16999 LOC_Os11g42190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr11 25413001 25430000 0 0 Deletion 16999 LOC_Os11g42200 laccase precursor protein, putative, expressed FN2918-S Chr11 25413001 25430000 0 0 Deletion 16999 LOC_Os11g42210 expressed protein FN2918-S Chr11 25817350 25817350 0 0 Insertion 21 disruptive_inframe_insertion HET LOC_Os11g42860 expressed protein FN2918-S Chr11 4349279 Chr5 3253827 0 Translocation 0 FN2918-S Chr11 4349280 Chr5 3253282 0 Translocation 0 FN2918-S Chr11 6157077 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN2918-S Chr11 792215 Chr3 32597015 0 Translocation 0 FN2918-S Chr11 792733 Chr3 32596862 0 Translocation 0 FN2918-S Chr11 8046001 8063000 0 0 Deletion 16999 LOC_Os11g14340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr11 8046001 8063000 0 0 Deletion 16999 LOC_Os11g14350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr11 8046001 8063000 0 0 Deletion 16999 LOC_Os11g14590 expressed protein FN2918-S Chr11 8657552 8657552 0 0 Insertion 1 downstream_gene_variant HET FN2918-S Chr12 1129867 1129869 0 0 Deletion 2 frameshift_variant HET LOC_Os12g03020 transposon protein, putative, CACTA, En/Spm sub-class FN2918-S Chr12 14133001 14160000 0 0 Deletion 26999 LOC_Os12g24690 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2918-S Chr12 14133001 14160000 0 0 Deletion 26999 LOC_Os12g24700 retrotransposon protein, putative, Ty1-copia subclass FN2918-S Chr12 15425789 15425790 0 0 Deletion 1 frameshift_variant HET LOC_Os12g26400 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr12 16339001 16381000 0 0 Deletion 41999 LOC_Os12g27720 hypothetical protein FN2918-S Chr12 16339001 16381000 0 0 Deletion 41999 LOC_Os12g27730 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2918-S Chr12 16339001 16381000 0 0 Deletion 41999 LOC_Os12g27740 expressed protein FN2918-S Chr12 16339001 16381000 0 0 Deletion 41999 LOC_Os12g27750 OsFBX441 - F-box domain containing protein, expressed FN2918-S Chr12 16339001 16381000 0 0 Deletion 41999 LOC_Os12g27760 OsFBX442 - F-box domain containing protein, expressed FN2918-S Chr12 16339001 16381000 0 0 Deletion 41999 LOC_Os12g27770 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr12 16339001 16381000 0 0 Deletion 41999 LOC_Os12g27780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr12 16339001 16381000 0 0 Deletion 41999 LOC_Os12g27810 OsFBX444 - F-box domain containing protein, expressed FN2918-S Chr12 16456001 16471000 0 0 Deletion 14999 LOC_Os12g27920 expressed protein FN2918-S Chr12 16456001 16471000 0 0 Deletion 14999 LOC_Os12g27930 expressed protein FN2918-S Chr12 16456001 16471000 0 0 Deletion 14999 LOC_Os12g27940 expressed protein FN2918-S Chr12 18026493 18026494 0 0 Deletion 1 upstream_gene_variant HET FN2918-S Chr12 18521500 Chr9 1654381 0 Translocation 0 LOC_Os12g30824 terpene synthase, putative, expressed FN2918-S Chr12 19380001 19416000 0 0 Deletion 35999 LOC_Os12g32140 transposon protein, putative, unclassified, expressed FN2918-S Chr12 19380001 19416000 0 0 Deletion 35999 LOC_Os12g32150 expressed protein FN2918-S Chr12 19380001 19416000 0 0 Deletion 35999 LOC_Os12g32160 expressed protein FN2918-S Chr12 19380001 19416000 0 0 Deletion 35999 LOC_Os12g32170 expressed protein FN2918-S Chr12 19547001 19582000 0 0 Deletion 34999 LOC_Os12g32410 retrotransposon protein, putative, unclassified FN2918-S Chr12 19547001 19582000 0 0 Deletion 34999 LOC_Os12g32420 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr12 19547001 19582000 0 0 Deletion 34999 LOC_Os12g32430 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr12 19547001 19582000 0 0 Deletion 34999 LOC_Os12g32440 retrotransposon protein, putative, Ty1-copia subclass FN2918-S Chr12 19547001 19582000 0 0 Deletion 34999 LOC_Os12g32450 expressed protein FN2918-S Chr12 2051144 2051144 0 0 Insertion 1 upstream_gene_variant HET FN2918-S Chr12 20909708 Chr6 8521025 0 Translocation 0 FN2918-S Chr12 22699001 22718000 0 0 Deletion 18999 LOC_Os12g37040 retrotransposon protein, putative, unclassified FN2918-S Chr12 22699001 22718000 0 0 Deletion 18999 LOC_Os12g37050 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr12 22699001 22718000 0 0 Deletion 18999 LOC_Os12g37060 expressed protein FN2918-S Chr12 22699001 22718000 0 0 Deletion 18999 LOC_Os12g37070 expressed protein FN2918-S Chr12 22699001 22718000 0 0 Deletion 18999 LOC_Os12g39190 retrotransposon protein, putative, Ty1-copia subclass FN2918-S Chr12 23366142 23366143 0 0 Deletion 1 downstream_gene_variant HET FN2918-S Chr12 26027001 26047000 0 0 Deletion 19999 LOC_Os01g01689 phosphatidylinositol 3- and 4-kinase family protein, expressed FN2918-S Chr12 26027001 26047000 0 0 Deletion 19999 LOC_Os12g41980 lipase class 3 family protein, putative, expressed FN2918-S Chr12 26027001 26047000 0 0 Deletion 19999 LOC_Os12g41990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr12 26027001 26047000 0 0 Deletion 19999 LOC_Os12g42000 expressed protein FN2918-S Chr12 26027001 26047000 0 0 Deletion 19999 LOC_Os12g42010 lipase class 3 family protein, putative, expressed FN2918-S Chr12 26843549 26843552 0 0 Deletion 3 intergenic_region HET FN2918-S Chr12 27369125 27369128 0 0 Deletion 3 upstream_gene_variant HET FN2918-S Chr12 4689001 4770000 0 0 Deletion 80999 LOC_Os12g08980 syntaxin-related protein KNOLLE, putative, expressed FN2918-S Chr12 4689001 4770000 0 0 Deletion 80999 LOC_Os12g08990 hypothetical protein FN2918-S Chr12 4689001 4770000 0 0 Deletion 80999 LOC_Os12g09000 phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed FN2918-S Chr12 4689001 4770000 0 0 Deletion 80999 LOC_Os12g09010 expressed protein FN2918-S Chr12 4689001 4770000 0 0 Deletion 80999 LOC_Os12g09020 retrotransposon protein, putative, unclassified FN2918-S Chr12 4689001 4770000 0 0 Deletion 80999 LOC_Os12g09030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr12 4689001 4770000 0 0 Deletion 80999 LOC_Os12g09050 hypothetical protein FN2918-S Chr12 4689001 4770000 0 0 Deletion 80999 LOC_Os12g09060 trehalose phosphatase, putative FN2918-S Chr12 4689001 4770000 0 0 Deletion 80999 LOC_Os12g09070 expressed protein FN2918-S Chr12 4689001 4770000 0 0 Deletion 80999 LOC_Os12g09080 brevis radix, putative, expressed FN2918-S Chr12 4689001 4770000 0 0 Deletion 80999 LOC_Os12g09089 protein kinase PKN/PRK1, effector, putative, expressed FN2918-S Chr12 4689001 4770000 0 0 Deletion 80999 LOC_Os12g09120 mRNA-capping enzyme, putative, expressed FN2918-S Chr12 4689001 4770000 0 0 Deletion 80999 LOC_Os12g09710 NBS-LRR disease resistance protein, putative, expressed FN2918-S Chr12 6952131 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2918-S Chr12 738001 762000 0 0 Deletion 23999 LOC_Os12g02330 LTPL13 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2918-S Chr12 738001 762000 0 0 Deletion 23999 LOC_Os12g02340 LTPL14 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN2918-S Chr12 8059766 8059769 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os12g14190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr12 8511698 8511698 0 0 Insertion 1 upstream_gene_variant HET FN2918-S Chr2 11260001 11296000 0 0 Deletion 35999 LOC_Os02g19280 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr2 11260001 11296000 0 0 Deletion 35999 LOC_Os02g19290 expressed protein FN2918-S Chr2 11260001 11296000 0 0 Deletion 35999 LOC_Os02g19300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr2 11260001 11296000 0 0 Deletion 35999 LOC_Os02g19310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr2 11260001 11296000 0 0 Deletion 35999 LOC_Os02g19320 hypothetical protein FN2918-S Chr2 11260001 11296000 0 0 Deletion 35999 LOC_Os02g19330 expressed protein FN2918-S Chr2 11721731 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2918-S Chr2 13508001 13554000 0 0 Deletion 45999 LOC_Os02g22700 retrotransposon, putative, centromere-specific, expressed FN2918-S Chr2 13508001 13554000 0 0 Deletion 45999 LOC_Os02g22710 expressed protein FN2918-S Chr2 13508001 13554000 0 0 Deletion 45999 LOC_Os02g22720 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr2 13508001 13554000 0 0 Deletion 45999 LOC_Os02g22730 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr2 13508001 13554000 0 0 Deletion 45999 LOC_Os02g22740 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr2 13508001 13554000 0 0 Deletion 45999 LOC_Os02g22750 expressed protein FN2918-S Chr2 13508001 13554000 0 0 Deletion 45999 LOC_Os02g22760 retrotransposon protein, putative, LINE subclass, expressed FN2918-S Chr2 15041001 15066000 0 0 Deletion 24999 LOC_Os02g25710 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr2 15041001 15066000 0 0 Deletion 24999 LOC_Os02g25720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr2 15666166 15666167 0 0 Deletion 1 upstream_gene_variant HET FN2918-S Chr2 21198001 21218000 0 0 Deletion 19999 LOC_Os02g35280 retrotransposon protein, putative, unclassified FN2918-S Chr2 21198001 21218000 0 0 Deletion 19999 LOC_Os02g35290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr2 24840001 24862000 0 0 Deletion 21999 LOC_Os02g41470 tRNA synthetases class II domain containing protein, expressed FN2918-S Chr2 24895685 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2918-S Chr2 26423663 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2918-S Chr2 29023001 29041000 0 0 Deletion 17999 LOC_Os02g47510 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed FN2918-S Chr2 29023001 29041000 0 0 Deletion 17999 LOC_Os02g47520 expressed protein FN2918-S Chr2 29023001 29041000 0 0 Deletion 17999 LOC_Os02g47530 expressed protein FN2918-S Chr2 29023001 29041000 0 0 Deletion 17999 LOC_Os02g48320 DNA binding protein, putative, expressed FN2918-S Chr2 29269781 29269786 0 0 Deletion 5 upstream_gene_variant HET FN2918-S Chr2 32107079 32107080 0 0 Deletion 1 INTERGENIC HET FN2918-S Chr2 6347001 6363000 0 0 Deletion 15999 LOC_Os02g12540 cytochrome P450, putative, expressed FN2918-S Chr3 12987001 12998000 0 0 Deletion 10999 LOC_Os03g22580 CW-type Zinc Finger, putative, expressed FN2918-S Chr3 12987001 12998000 0 0 Deletion 10999 LOC_Os03g23980 NAD dependent epimerase/dehydratase family protein, putative, expressed FN2918-S Chr3 15342001 15359000 0 0 Deletion 16999 LOC_Os03g26880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr3 15342001 15359000 0 0 Deletion 16999 LOC_Os03g26890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr3 15342001 15359000 0 0 Deletion 16999 LOC_Os03g26900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr3 17656146 17656146 0 0 Insertion 1 upstream_gene_variant HET FN2918-S Chr3 19856370 19856379 0 0 Deletion 9 upstream_gene_variant HET FN2918-S Chr3 21237001 21251000 0 0 Deletion 13999 LOC_Os03g38260 60S ribosomal protein L19-3, putative, expressed FN2918-S Chr3 21237001 21251000 0 0 Deletion 13999 LOC_Os03g38270 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr3 21237001 21251000 0 0 Deletion 13999 LOC_Os03g38284 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr3 21237001 21251000 0 0 Deletion 13999 LOC_Os03g38450 expressed protein FN2918-S Chr3 24803014 C-G 0 0 Single Base Substitution 0 INTRON HET FN2918-S Chr3 29254001 29268000 0 0 Deletion 13999 LOC_Os03g51140 HEAT repeat family protein, putative, expressed FN2918-S Chr3 30120001 30172000 0 0 Deletion 51999 LOC_Os03g52490 nucleic acid binding protein, putative, expressed FN2918-S Chr3 30120001 30172000 0 0 Deletion 51999 LOC_Os03g52500 expressed protein FN2918-S Chr3 30120001 30172000 0 0 Deletion 51999 LOC_Os03g52510 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr3 30120001 30172000 0 0 Deletion 51999 LOC_Os03g52520 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr3 30120001 30172000 0 0 Deletion 51999 LOC_Os03g52530 retrotransposon protein, putative, Ty3-gypsy subclass FN2918-S Chr3 30120001 30172000 0 0 Deletion 51999 LOC_Os03g52540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr3 30120001 30172000 0 0 Deletion 51999 LOC_Os03g52550 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr3 30120001 30172000 0 0 Deletion 51999 LOC_Os03g52560 glycosyl hydrolases, putative, expressed FN2918-S Chr3 30120001 30172000 0 0 Deletion 51999 LOC_Os03g52570 glycerol-3-phosphate acyltransferase, putative, expressed FN2918-S Chr3 30120001 30172000 0 0 Deletion 51999 LOC_Os03g52594 CCR4-NOT transcription factor, putative, expressed FN2918-S Chr3 32218001 32230000 0 0 Deletion 11999 LOC_Os03g56560 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr3 32218001 32230000 0 0 Deletion 11999 LOC_Os03g56566 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr3 32218001 32230000 0 0 Deletion 11999 LOC_Os03g56572 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr3 34111605 34111607 0 0 Deletion 2 INTERGENIC HOMO FN2918-S Chr3 706085 A-G 0 0 Single Base Substitution 0 INTRON HET FN2918-S Chr3 760736 760738 0 0 Deletion 2 INTERGENIC HET FN2918-S Chr4 10245001 10266000 0 0 Deletion 20999 LOC_Os04g18559 retrotransposon protein, putative, unclassified FN2918-S Chr4 10245001 10266000 0 0 Deletion 20999 LOC_Os04g18570 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr4 10245001 10266000 0 0 Deletion 20999 LOC_Os04g18580 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr4 10245001 10266000 0 0 Deletion 20999 LOC_Os04g19070 retrotransposon protein, putative, unclassified FN2918-S Chr4 13261001 13290000 0 0 Deletion 28999 LOC_Os04g23250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr4 13261001 13290000 0 0 Deletion 28999 LOC_Os04g23260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr4 13261001 13290000 0 0 Deletion 28999 LOC_Os04g23270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr4 13261001 13290000 0 0 Deletion 28999 LOC_Os04g23280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr4 13367753 13367756 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os04g23380 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr4 13874855 13874855 0 0 Insertion 1 upstream_gene_variant HET FN2918-S Chr4 16592001 16630000 0 0 Deletion 37999 LOC_Os04g28120 response regulator receiver domain containing protein, expressed FN2918-S Chr4 16592001 16630000 0 0 Deletion 37999 LOC_Os04g28130 two-component response regulator, putative, expressed FN2918-S Chr4 16592001 16630000 0 0 Deletion 37999 LOC_Os04g28140 conserved hypothetical protein FN2918-S Chr4 16592001 16630000 0 0 Deletion 37999 LOC_Os04g28150 expressed protein FN2918-S Chr4 16592001 16630000 0 0 Deletion 37999 LOC_Os04g28160 response regulator receiver domain containing protein, expressed FN2918-S Chr4 21020644 21020731 0 0 Deletion 87 downstream_gene_variant HET FN2918-S Chr4 2187024 2187024 0 0 Insertion 3 disruptive_inframe_insertion HET LOC_Os04g04574 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr4 22656907 22656907 0 0 Insertion 1 downstream_gene_variant HET FN2918-S Chr4 23574527 23574529 0 0 Deletion 2 INTERGENIC HOMO FN2918-S Chr4 28711842 28711843 0 0 Deletion 1 upstream_gene_variant HET FN2918-S Chr4 34765001 34783000 0 0 Deletion 17999 LOC_Os04g58430 retrotransposon protein, putative, unclassified FN2918-S Chr4 34765001 34783000 0 0 Deletion 17999 LOC_Os04g58440 retrotransposon protein, putative, unclassified FN2918-S Chr4 34765001 34783000 0 0 Deletion 17999 LOC_Os04g58450 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr4 34765001 34783000 0 0 Deletion 17999 LOC_Os04g58460 expressed protein FN2918-S Chr4 34765001 34783000 0 0 Deletion 17999 LOC_Os04g58470 choline transporter-related, putative, expressed FN2918-S Chr4 8143895 8143916 0 0 Deletion 21 intron_variant HET FN2918-S Chr4 9496001 9517000 0 0 Deletion 20999 LOC_Os04g17340 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr4 9496001 9517000 0 0 Deletion 20999 LOC_Os04g17350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr4 9496001 9517000 0 0 Deletion 20999 LOC_Os04g17360 retrotransposon protein, putative, Ty3-gypsy subclass FN2918-S Chr4 9496001 9517000 0 0 Deletion 20999 LOC_Os04g17370 retrotransposon protein, putative, Ty3-gypsy subclass FN2918-S Chr4 9496001 9517000 0 0 Deletion 20999 LOC_Os04g17380 retrotransposon protein, putative, Ty3-gypsy subclass FN2918-S Chr4 9496001 9517000 0 0 Deletion 20999 LOC_Os04g17390 retrotransposon protein, putative, Ty3-gypsy subclass FN2918-S Chr5 10320538 10320538 0 0 Insertion 3 upstream_gene_variant HET FN2918-S Chr5 10626001 10679000 0 0 Deletion 52999 LOC_Os05g18400 retrotransposon protein, putative, unclassified FN2918-S Chr5 10626001 10679000 0 0 Deletion 52999 LOC_Os05g18410 retrotransposon protein, putative, Ty1-copia subclass FN2918-S Chr5 10626001 10679000 0 0 Deletion 52999 LOC_Os05g18419 retrotransposon, putative, centromere-specific FN2918-S Chr5 10626001 10679000 0 0 Deletion 52999 LOC_Os05g18446 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr5 10626001 10679000 0 0 Deletion 52999 LOC_Os05g18470 CRAL/TRIO domain containing protein, expressed FN2918-S Chr5 10626001 10679000 0 0 Deletion 52999 LOC_Os05g18480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr5 11162345 11162345 0 0 Insertion 1 intron_variant HET FN2918-S Chr5 12626001 12684000 0 0 Deletion 57999 LOC_Os05g22330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr5 12626001 12684000 0 0 Deletion 57999 LOC_Os05g22340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr5 12626001 12684000 0 0 Deletion 57999 LOC_Os05g22350 retrotransposon, putative, centromere-specific, expressed FN2918-S Chr5 12626001 12684000 0 0 Deletion 57999 LOC_Os05g22360 hypothetical protein FN2918-S Chr5 12626001 12684000 0 0 Deletion 57999 LOC_Os05g22370 N-acetylglucosaminyl transferase component, putative, expressed FN2918-S Chr5 12626001 12684000 0 0 Deletion 57999 LOC_Os05g22600 expressed protein FN2918-S Chr5 13041001 13081000 0 0 Deletion 39999 LOC_Os05g22920 digestive organ expansion factor, putative, expressed FN2918-S Chr5 13041001 13081000 0 0 Deletion 39999 LOC_Os05g22930 CAAX amino terminal protease family protein, putative, expressed FN2918-S Chr5 13041001 13081000 0 0 Deletion 39999 LOC_Os05g22940 acetyl-CoA carboxylase, putative, expressed FN2918-S Chr5 13746001 13757000 0 0 Deletion 10999 LOC_Os05g23910 histone-like transcription factor and archaeal histone, putative, expressed FN2918-S Chr5 13746001 13757000 0 0 Deletion 10999 LOC_Os05g23924 glycosyl hydrolase family 10 protein, putative, expressed FN2918-S Chr5 13746001 13757000 0 0 Deletion 10999 LOC_Os05g23960 pentatricopeptide, putative, expressed FN2918-S Chr5 14924099 14924099 0 0 Insertion 1 downstream_gene_variant HET FN2918-S Chr5 17853054 17853062 0 0 Deletion 8 INTERGENIC HOMO FN2918-S Chr5 19381816 19381816 0 0 Insertion 1 upstream_gene_variant HET FN2918-S Chr5 19550001 19573000 0 0 Deletion 22999 LOC_Os05g33330 transposon protein, putative, CACTA, En/Spm sub-class FN2918-S Chr5 19550001 19573000 0 0 Deletion 22999 LOC_Os05g33340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr5 24952707 24952708 0 0 Deletion 1 downstream_gene_variant HET FN2918-S Chr5 2792692 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2918-S Chr5 29935893 29935893 0 0 Insertion 1 intergenic_region HET FN2918-S Chr5 3530234 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2918-S Chr5 4380150 4380152 0 0 Deletion 2 downstream_gene_variant HET FN2918-S Chr5 511886 511888 0 0 Deletion 2 upstream_gene_variant HET FN2918-S Chr5 5579031 5579031 0 0 Insertion 1 downstream_gene_variant HET FN2918-S Chr5 6495709 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2918-S Chr5 8545779 8545779 0 0 Insertion 1 intergenic_region HET FN2918-S Chr5 8572510 8572510 0 0 Insertion 89 upstream_gene_variant HET FN2918-S Chr5 9049120 9049126 0 0 Deletion 6 INTERGENIC HOMO FN2918-S Chr5 9481023 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2918-S Chr5 961702 Chr3 18184303 0 Translocation 0 FN2918-S Chr5 962001 973000 0 0 Deletion 10999 FN2918-S Chr5 9707001 9748000 0 0 Deletion 40999 LOC_Os05g17010 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr5 9707001 9748000 0 0 Deletion 40999 LOC_Os05g17020 expressed protein FN2918-S Chr5 9707001 9748000 0 0 Deletion 40999 LOC_Os05g17030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr5 9707001 9748000 0 0 Deletion 40999 LOC_Os05g17040 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr5 9707001 9748000 0 0 Deletion 40999 LOC_Os05g17050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr5 9707001 9748000 0 0 Deletion 40999 LOC_Os05g17060 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr5 9707001 9748000 0 0 Deletion 40999 LOC_Os05g17070 retrotransposon protein, putative, unclassified FN2918-S Chr5 9802418 9802418 0 0 Insertion 1 upstream_gene_variant HET FN2918-S Chr5 986132 Chr3 18181053 0 Translocation 0 FN2918-S Chr6 11888219 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g20630 SAM dependent carboxyl methyltransferase, putative, expressed FN2918-S Chr6 13729281 13729281 0 0 Insertion 1 upstream_gene_variant HET FN2918-S Chr6 15284771 15284772 0 0 Deletion 1 upstream_gene_variant HET FN2918-S Chr6 16081140 16081226 0 0 Deletion 86 frameshift_variant HET LOC_Os06g28310 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr6 16243537 16243538 0 0 Deletion 1 upstream_gene_variant HET FN2918-S Chr6 17316001 17335000 0 0 Deletion 18999 LOC_Os06g30060 expressed protein FN2918-S Chr6 17316001 17335000 0 0 Deletion 18999 LOC_Os06g30070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr6 17316001 17335000 0 0 Deletion 18999 LOC_Os06g30080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr6 19576361 19576364 0 0 Deletion 3 INTERGENIC HET FN2918-S Chr6 23090979 23090979 0 0 Insertion 1 frameshift_variant HET LOC_Os06g38920 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr6 24641001 24672000 0 0 Deletion 30999 LOC_Os06g41190 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2918-S Chr6 24641001 24672000 0 0 Deletion 30999 LOC_Os06g41200 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2918-S Chr6 24641001 24672000 0 0 Deletion 30999 LOC_Os06g41210 hypothetical protein FN2918-S Chr6 26006462 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g43270 protein kinase domain containing protein, expressed FN2918-S Chr6 26262126 26262126 0 0 Insertion 2 upstream_gene_variant HET FN2918-S Chr6 27305001 27312000 0 0 Deletion 6999 LOC_Os06g45170 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr6 27305001 27312000 0 0 Deletion 6999 LOC_Os06g45720 BTB/POZ domain containing protein, expressed FN2918-S Chr6 3019876 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2918-S Chr6 6074822 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2918-S Chr6 6119160 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2918-S Chr6 8926385 8926386 0 0 Deletion 1 intron_variant HET FN2918-S Chr6 9888732 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2918-S Chr7 12357344 12357345 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os07g22110 retrotransposon, putative, centromere-specific, expressed FN2918-S Chr7 14676001 14702000 0 0 Deletion 25999 LOC_Os07g25600 expressed protein FN2918-S Chr7 14676001 14702000 0 0 Deletion 25999 LOC_Os07g25620 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr7 14676001 14702000 0 0 Deletion 25999 LOC_Os07g25630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr7 14676001 14702000 0 0 Deletion 25999 LOC_Os07g25640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr7 14983001 14999000 0 0 Deletion 15999 LOC_Os07g26110 membrane associated DUF588 domain containing protein, putative, expressed FN2918-S Chr7 17632100 17632179 0 0 Deletion 79 upstream_gene_variant HET FN2918-S Chr7 27254304 27254356 0 0 Deletion 52 upstream_gene_variant HET FN2918-S Chr7 3140727 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2918-S Chr7 3162605 3162605 0 0 Insertion 106 downstream_gene_variant HET FN2918-S Chr7 4846001 4888000 0 0 Deletion 41999 LOC_Os07g09270 expressed protein FN2918-S Chr7 4846001 4888000 0 0 Deletion 41999 LOC_Os07g09280 expressed protein FN2918-S Chr7 4846001 4888000 0 0 Deletion 41999 LOC_Os07g09290 hypothetical protein FN2918-S Chr7 4846001 4888000 0 0 Deletion 41999 LOC_Os07g09310 thioredoxin, putative, expressed FN2918-S Chr7 4846001 4888000 0 0 Deletion 41999 LOC_Os07g09320 FHA domain containing protein, putative, expressed FN2918-S Chr7 6505001 6532000 0 0 Deletion 26999 LOC_Os07g11780 transposon protein, putative, CACTA, En/Spm sub-class FN2918-S Chr7 6505001 6532000 0 0 Deletion 26999 LOC_Os07g11790 terpene synthase, putative, expressed FN2918-S Chr7 6505001 6532000 0 0 Deletion 26999 LOC_Os07g11800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr7 6505001 6532000 0 0 Deletion 26999 LOC_Os07g12120 hypothetical protein FN2918-S Chr7 9752758 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2918-S Chr8 10447001 10457000 0 0 Deletion 9999 LOC_Os08g17080 PPR repeat domain containing protein, putative, expressed FN2918-S Chr8 10447001 10457000 0 0 Deletion 9999 LOC_Os08g17620 expressed protein FN2918-S Chr8 11091049 11091091 0 0 Deletion 42 inframe_insertion HET LOC_Os08g18090 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr8 13980721 13980722 0 0 Deletion 1 downstream_gene_variant HET FN2918-S Chr8 15379735 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2918-S Chr8 15454819 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2918-S Chr8 18230189 Chr7 2584117 0 Translocation 0 LOC_Os07g05540 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr8 18655001 18669000 0 0 Deletion 13999 LOC_Os08g30310 transposon protein, putative, CACTA, En/Spm sub-class FN2918-S Chr8 18655001 18669000 0 0 Deletion 13999 LOC_Os08g30320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr8 18655001 18669000 0 0 Deletion 13999 LOC_Os08g30330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr8 20714832 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2918-S Chr8 21066345 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2918-S Chr8 21888778 21888779 0 0 Deletion 1 downstream_gene_variant HET FN2918-S Chr8 21896242 21896259 0 0 Deletion 17 upstream_gene_variant HET FN2918-S Chr8 23124001 23149000 0 0 Deletion 24999 LOC_Os08g36650 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr8 23124001 23149000 0 0 Deletion 24999 LOC_Os08g36660 expressed protein FN2918-S Chr8 23124001 23149000 0 0 Deletion 24999 LOC_Os08g36670 transposon protein, putative, unclassified, expressed FN2918-S Chr8 23124001 23149000 0 0 Deletion 24999 LOC_Os08g36680 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed FN2918-S Chr8 23124001 23149000 0 0 Deletion 24999 LOC_Os08g37300 expressed protein FN2918-S Chr8 25483100 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g40260 OsSPL15 - SBP-box gene family member, expressed FN2918-S Chr8 26458001 26481000 0 0 Deletion 22999 LOC_Os08g41910 Sua5/YciO/YrdC/YwlC family protein, putative, expressed FN2918-S Chr8 2694143 Chr1 16146351 0 Translocation 0 FN2918-S Chr8 4476001 4503000 0 0 Deletion 26999 LOC_Os08g07950 NB-ARC domain containing protein, expressed FN2918-S Chr8 4476001 4503000 0 0 Deletion 26999 LOC_Os08g07960 mitotic checkpoint protein, putative, expressed FN2918-S Chr9 10595127 10595131 0 0 Deletion 4 upstream_gene_variant HET FN2918-S Chr9 11023001 11053000 0 0 Deletion 29999 LOC_Os09g18010 expressed protein FN2918-S Chr9 11023001 11053000 0 0 Deletion 29999 LOC_Os09g18020 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN2918-S Chr9 14411001 14425000 0 0 Deletion 13999 LOC_Os09g24270 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr9 14411001 14425000 0 0 Deletion 13999 LOC_Os09g24280 hypothetical protein FN2918-S Chr9 16059502 16059502 0 0 Insertion 3 downstream_gene_variant HET FN2918-S Chr9 16905094 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2918-S Chr9 19748181 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2918-S Chr9 2205001 2218000 0 0 Deletion 12999 LOC_Os09g04200 transposon protein, putative, CACTA, En/Spm sub-class FN2918-S Chr9 2205001 2218000 0 0 Deletion 12999 LOC_Os09g04210 hydrolase/ zinc ion binding protein, putative, expressed FN2918-S Chr9 2205001 2218000 0 0 Deletion 12999 LOC_Os09g06464 CCT/B-box zinc finger protein, putative, expressed FN2918-S Chr9 22371806 22560793 0 0 Inversion 188987 FN2918-S Chr9 22371817 22560794 0 0 Inversion 188977 FN2918-S Chr9 22474001 22500000 0 0 Deletion 25999 LOC_Os09g39160 thiol protease SEN102 precursor, putative, expressed FN2918-S Chr9 22474001 22500000 0 0 Deletion 25999 LOC_Os09g39170 cysteine proteinase COT44 precursor, putative, expressed FN2918-S Chr9 22474001 22500000 0 0 Deletion 25999 LOC_Os09g39320 CTR1-like protein kinase, putative, expressed FN2918-S Chr9 2836598 2836603 0 0 Deletion 5 intergenic_region HET FN2918-S Chr9 4762001 4795000 0 0 Deletion 32999 LOC_Os09g08960 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr9 4762001 4795000 0 0 Deletion 32999 LOC_Os09g08970 expressed protein FN2918-S Chr9 4762001 4795000 0 0 Deletion 32999 LOC_Os09g08980 retrotransposon protein, putative, unclassified FN2918-S Chr9 4762001 4795000 0 0 Deletion 32999 LOC_Os09g08990 cytochrome P450, putative, expressed FN2918-S Chr9 4762001 4795000 0 0 Deletion 32999 LOC_Os09g09000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr9 5467019 5467021 0 0 Deletion 2 frameshift_variant HET LOC_Os09g10030 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr9 5745756 5745756 0 0 Insertion 1 upstream_gene_variant HET FN2918-S Chr9 603001 622000 0 0 Deletion 18999 LOC_Os09g01900 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr9 603001 622000 0 0 Deletion 18999 LOC_Os09g01910 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr9 6359097 6359097 0 0 Insertion 2 downstream_gene_variant HET FN2918-S Chr9 6645001 6742000 0 0 Deletion 96999 LOC_Os09g11850 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN2918-S Chr9 6645001 6742000 0 0 Deletion 96999 LOC_Os09g11860 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN2918-S Chr9 6645001 6742000 0 0 Deletion 96999 LOC_Os09g11870 transposon protein, putative, unclassified, expressed FN2918-S Chr9 6645001 6742000 0 0 Deletion 96999 LOC_Os09g11880 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr9 6645001 6742000 0 0 Deletion 96999 LOC_Os09g11890 expressed protein FN2918-S Chr9 6645001 6742000 0 0 Deletion 96999 LOC_Os09g11900 expressed protein FN2918-S Chr9 6645001 6742000 0 0 Deletion 96999 LOC_Os09g11910 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2918-S Chr9 6645001 6742000 0 0 Deletion 96999 LOC_Os09g11920 transposon protein, putative, unclassified, expressed FN2918-S Chr9 6645001 6742000 0 0 Deletion 96999 LOC_Os09g11930 expressed protein FN2918-S Chr9 6645001 6742000 0 0 Deletion 96999 LOC_Os09g11940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2918-S Chr9 6645001 6742000 0 0 Deletion 96999 LOC_Os09g11950 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr9 6645001 6742000 0 0 Deletion 96999 LOC_Os09g11960 retrotransposon protein, putative, unclassified, expressed FN2918-S Chr9 7385407 7385407 0 0 Insertion 2 upstream_gene_variant HET FN2918-S Chr9 8027536 8027536 0 0 Insertion 1 upstream_gene_variant HET FN2918-S Chr9 8846809 8846884 0 0 Deletion 75 disruptive_inframe_deletion HET LOC_Os09g14840 retrotransposon protein, putative, unclassified, expressed