FN2921-S Chr1 13755085 13755098 0 0 Deletion 13 FRAME_SHIFT HOMO LOC_Os01g24400 retrotransposon protein, putative, unclassified, expressed FN2921-S Chr1 14540084 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g25650 retrotransposon protein, putative, unclassified, expressed FN2921-S Chr1 23100299 G-A 0 0 Single Base Substitution 0 INTRON HET FN2921-S Chr1 23106214 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2921-S Chr1 27704996 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN2921-S Chr1 27706341 27706348 0 0 Deletion 7 INTERGENIC HOMO FN2921-S Chr1 29372464 29372464 0 0 Insertion 1 downstream_gene_variant HET FN2921-S Chr1 3488135 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2921-S Chr1 4552145 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g09050 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2921-S Chr10 12432172 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2921-S Chr10 6052026 6052026 0 0 Insertion 1 upstream_gene_variant HET FN2921-S Chr10 9920749 9920754 0 0 Deletion 5 INTERGENIC HOMO FN2921-S Chr11 14753919 Chr6 9352429 0 Translocation 0 FN2921-S Chr11 15026492 15026492 0 0 Insertion 4 upstream_gene_variant HET FN2921-S Chr11 15339318 Chr3 15104050 0 Translocation 0 FN2921-S Chr11 21253718 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g36150 receptor-like protein kinase 2 precursor, putative, expressed FN2921-S Chr11 21737319 21737323 0 0 Deletion 4 INTERGENIC HOMO FN2921-S Chr11 26982412 26982413 0 0 Deletion 1 downstream_gene_variant HET FN2921-S Chr11 3057520 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2921-S Chr11 9811821 9811822 0 0 Deletion 1 INTERGENIC HOMO FN2921-S Chr12 11713845 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2921-S Chr12 11713846 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2921-S Chr12 15191495 15191496 0 0 Deletion 1 upstream_gene_variant HET FN2921-S Chr12 15683807 15683808 0 0 Deletion 1 upstream_gene_variant HET FN2921-S Chr12 15825352 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2921-S Chr12 15943162 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2921-S Chr12 17507986 Chr7 11859468 0 Translocation 0 FN2921-S Chr12 18687091 Chr9 6055960 0 Translocation 0 FN2921-S Chr12 1891497 1891501 0 0 Deletion 4 FRAME_SHIFT HET LOC_Os12g04440 2-isopropylmalate synthase B, putative, expressed FN2921-S Chr12 21403209 21403209 0 0 Insertion 2 upstream_gene_variant HET FN2921-S Chr12 4332524 Chr1 25576624 0 Translocation 0 FN2921-S Chr12 8135140 G-C 0 0 Single Base Substitution 0 INTRON HET FN2921-S Chr2 10637639 T-C 0 0 Single Base Substitution 0 INTRON HET FN2921-S Chr2 13593794 13593823 0 0 Deletion 29 upstream_gene_variant HET FN2921-S Chr2 21796424 21796431 0 0 Deletion 7 downstream_gene_variant HET FN2921-S Chr2 22902795 22902796 0 0 Deletion 1 downstream_gene_variant HET FN2921-S Chr2 29843350 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2921-S Chr2 31301203 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g51150 sphingolipid C4-hydroxylase SUR2, putative, expressed FN2921-S Chr2 481199 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2921-S Chr2 9037156 9037156 0 0 Insertion 78 upstream_gene_variant HET FN2921-S Chr2 9197908 9197908 0 0 Insertion 1 upstream_gene_variant HET FN2921-S Chr3 11687382 11687382 0 0 Insertion 34 upstream_gene_variant HET FN2921-S Chr3 14577639 14577667 0 0 Deletion 28 upstream_gene_variant HET FN2921-S Chr3 18991075 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2921-S Chr3 29724117 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2921-S Chr3 7207841 7207860 0 0 Deletion 19 INTERGENIC HOMO FN2921-S Chr4 10559496 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2921-S Chr4 15266164 15266164 0 0 Insertion 1 upstream_gene_variant HET FN2921-S Chr4 20648675 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2921-S Chr4 25834734 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN2921-S Chr4 28619534 28619534 0 0 Insertion 1 downstream_gene_variant HET FN2921-S Chr4 34921001 34944000 0 0 Deletion 22999 LOC_Os04g58734 expressed protein FN2921-S Chr4 34921001 34944000 0 0 Deletion 22999 LOC_Os04g58740 expressed protein FN2921-S Chr4 34921001 34944000 0 0 Deletion 22999 LOC_Os04g58750 protein kinase family protein, putative, expressed FN2921-S Chr4 34921001 34944000 0 0 Deletion 22999 LOC_Os05g02850 retrotransposon protein, putative, unclassified, expressed FN2921-S Chr4 34940268 Chr1 7817021 0 Translocation 0 FN2921-S Chr4 34944706 Chr1 7817010 0 Translocation 0 FN2921-S Chr4 6349727 6349747 0 0 Deletion 20 upstream_gene_variant HET FN2921-S Chr4 6634982 C-T 0 0 Single Base Substitution 0 INTRON HET FN2921-S Chr4 9554347 9554348 0 0 Deletion 1 intron_variant HET FN2921-S Chr5 10026541 Chr4 3220852 0 Translocation 0 FN2921-S Chr5 20641218 20641218 0 0 Insertion 1 upstream_gene_variant HET FN2921-S Chr5 29179565 29179565 0 0 Insertion 1 upstream_gene_variant HET FN2921-S Chr5 3999999 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2921-S Chr5 8852674 Chr1 37211262 0 Translocation 0 LOC_Os01g64070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2921-S Chr5 8852674 Chr1 37211262 0 Translocation 0 LOC_Os05g15650 retrotransposon protein, putative, unclassified FN2921-S Chr6 12349391 12349396 0 0 Deletion 5 INTRON HET FN2921-S Chr6 15960549 15960549 0 0 Insertion 1 frameshift_variant HET LOC_Os06g28100 retrotransposon protein, putative, unclassified, expressed FN2921-S Chr6 23223845 23223848 0 0 Deletion 3 upstream_gene_variant HET FN2921-S Chr6 30634224 30634226 0 0 Deletion 2 FRAME_SHIFT HOMO LOC_Os06g50610 transposon protein, putative, unclassified, expressed FN2921-S Chr6 4905274 4905275 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os06g09640 retrotransposon protein, putative, unclassified, expressed FN2921-S Chr6 8204456 8204456 0 0 Insertion 12 disruptive_inframe_insertion HET LOC_Os06g14570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2921-S Chr7 10290187 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2921-S Chr7 12277170 12277170 0 0 Insertion 1 downstream_gene_variant HET FN2921-S Chr7 19005972 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2921-S Chr7 19893868 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2921-S Chr7 21461588 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2921-S Chr8 16637148 16637148 0 0 Insertion 39 downstream_gene_variant HET FN2921-S Chr8 5834366 5834371 0 0 Deletion 5 FRAME_SHIFT HOMO LOC_Os08g10060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2921-S Chr9 11481825 11481827 0 0 Deletion 2 INTERGENIC HOMO FN2921-S Chr9 14735842 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2921-S Chr9 5997638 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2921-S Chr9 5997639 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2921-S Chr9 8299252 8299252 0 0 Insertion 1 downstream_gene_variant HET