FN2922-S Chr1 10741728 10741733 0 0 Deletion 5 INTRON HET FN2922-S Chr1 10784994 10785063 0 0 Deletion 69 upstream_gene_variant HET FN2922-S Chr1 13070839 13070840 0 0 Deletion 1 upstream_gene_variant HET FN2922-S Chr1 20969627 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2922-S Chr1 25737246 25737247 0 0 Deletion 1 upstream_gene_variant HET FN2922-S Chr1 25871166 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2922-S Chr1 29628266 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2922-S Chr1 2998302 2998368 0 0 Deletion 66 upstream_gene_variant HET FN2922-S Chr1 43256191 43256193 0 0 Deletion 2 INTERGENIC HET FN2922-S Chr1 6416883 G-A 0 0 Single Base Substitution 0 INTRON HET FN2922-S Chr1 7362967 7362969 0 0 Deletion 2 INTERGENIC HET FN2922-S Chr1 7910190 7910190 0 0 Insertion 2 intergenic_region HET FN2922-S Chr1 8469463 8469483 0 0 Deletion 20 downstream_gene_variant HET FN2922-S Chr10 12654956 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2922-S Chr10 14073288 14073289 0 0 Deletion 1 downstream_gene_variant HET FN2922-S Chr10 18213315 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2922-S Chr10 22309905 G-C 0 0 Single Base Substitution 0 INTRON HET FN2922-S Chr10 4063662 4063678 0 0 Deletion 16 intron_variant HET FN2922-S Chr10 8384827 8384827 0 0 Insertion 2 downstream_gene_variant HET FN2922-S Chr11 16232331 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g28230 retrotransposon protein, putative, unclassified, expressed FN2922-S Chr11 17184274 17184274 0 0 Insertion 2 upstream_gene_variant HET FN2922-S Chr11 17706471 17706499 0 0 Deletion 28 upstream_gene_variant HET FN2922-S Chr11 20126877 20126878 0 0 Deletion 1 upstream_gene_variant HET FN2922-S Chr11 20236155 20236156 0 0 Deletion 1 upstream_gene_variant HET FN2922-S Chr11 23645273 23645274 0 0 Deletion 1 upstream_gene_variant HET FN2922-S Chr11 25836102 25836102 0 0 Insertion 101 downstream_gene_variant HET FN2922-S Chr11 26729451 26729451 0 0 Insertion 93 upstream_gene_variant HET FN2922-S Chr11 28616920 28616921 0 0 Deletion 1 upstream_gene_variant HET FN2922-S Chr11 4145536 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2922-S Chr11 6458672 6458675 0 0 Deletion 3 upstream_gene_variant HET FN2922-S Chr12 11468824 T-G 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN2922-S Chr12 12424124 12424126 0 0 Deletion 2 INTERGENIC HOMO FN2922-S Chr12 13048871 13048871 0 0 Insertion 1 intergenic_region HET FN2922-S Chr12 15592787 Chr11 21832322 0 Translocation 0 FN2922-S Chr12 27052831 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2922-S Chr12 9852480 9852480 0 0 Insertion 2 downstream_gene_variant HET FN2922-S Chr2 21645988 21645988 0 0 Insertion 4 upstream_gene_variant HET FN2922-S Chr2 22191428 22191432 0 0 Deletion 4 upstream_gene_variant HET FN2922-S Chr2 9480934 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2922-S Chr2 9481337 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN2922-S Chr3 13517628 13517628 0 0 Insertion 2 INTERGENIC HET FN2922-S Chr3 15789344 15789344 0 0 Insertion 2 upstream_gene_variant HET FN2922-S Chr3 1886009 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2922-S Chr3 21554574 21554574 0 0 Insertion 97 downstream_gene_variant HET FN2922-S Chr3 24393618 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2922-S Chr3 24435734 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2922-S Chr3 263294 C-T 0 0 Single Base Substitution 0 START_GAINED HET FN2922-S Chr3 28977006 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2922-S Chr3 3968230 3968233 0 0 Deletion 3 upstream_gene_variant HET FN2922-S Chr4 14628106 14628107 0 0 Deletion 1 upstream_gene_variant HET FN2922-S Chr4 16916832 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN2922-S Chr4 17166970 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2922-S Chr4 1898070 1898070 0 0 Insertion 1 frameshift_variant HET LOC_Os04g04120 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2922-S Chr4 19899232 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2922-S Chr4 2332987 2332987 0 0 Insertion 1 upstream_gene_variant HET FN2922-S Chr4 25520189 25520193 0 0 Deletion 4 upstream_gene_variant HET FN2922-S Chr4 29879990 29880057 0 0 Deletion 67 downstream_gene_variant HET FN2922-S Chr4 3116779 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os04g06010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2922-S Chr4 5563269 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2922-S Chr4 7452431 7452431 0 0 Insertion 1 downstream_gene_variant HET FN2922-S Chr4 9331674 9331690 0 0 Deletion 16 upstream_gene_variant HET FN2922-S Chr5 10472043 10472073 0 0 Deletion 30 disruptive_inframe_deletion HET LOC_Os05g18200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2922-S Chr5 11569354 11569354 0 0 Insertion 3 upstream_gene_variant HET FN2922-S Chr5 12502764 12503567 0 0 Deletion 803 intergenic_region HET FN2922-S Chr5 19296501 19296501 0 0 Insertion 107 upstream_gene_variant FN2922-S Chr5 28998351 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2922-S Chr5 5012877 5012878 0 0 Deletion 1 downstream_gene_variant HET FN2922-S Chr6 11367496 11367496 0 0 Insertion 1 upstream_gene_variant HET FN2922-S Chr6 11630753 12019471 0 0 Inversion 388718 FN2922-S Chr6 11630755 Chr3 30845961 0 Translocation 0 FN2922-S Chr6 11631507 Chr3 30845969 0 Translocation 0 FN2922-S Chr6 11631521 12019472 0 0 Inversion 387951 FN2922-S Chr6 17926305 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2922-S Chr6 24605155 24605156 0 0 Deletion 1 INTERGENIC HOMO FN2922-S Chr6 25634274 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN2922-S Chr6 25802373 25802374 0 0 Deletion 1 INTERGENIC HOMO FN2922-S Chr6 6968587 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2922-S Chr6 9012365 9012366 0 0 Deletion 1 upstream_gene_variant HET FN2922-S Chr7 11220053 G-A 0 0 Single Base Substitution 0 INTRON HET FN2922-S Chr7 11828990 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2922-S Chr7 12240311 12240313 0 0 Deletion 2 intergenic_region HET FN2922-S Chr7 1494241 1494242 0 0 Deletion 1 INTERGENIC HOMO FN2922-S Chr7 15466031 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2922-S Chr7 21855712 T-A 0 0 Single Base Substitution 0 INTRON HET FN2922-S Chr7 23399647 23624849 0 0 Inversion 225202 LOC_Os07g39020 OsSub53 - Putative Subtilisin homologue, expressed FN2922-S Chr7 23399650 23624856 0 0 Inversion 225206 LOC_Os07g39020 OsSub53 - Putative Subtilisin homologue, expressed FN2922-S Chr7 23767442 Chr1 20739044 0 Translocation 0 FN2922-S Chr7 5038936 5038938 0 0 Deletion 2 upstream_gene_variant HET FN2922-S Chr8 13772807 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2922-S Chr8 13892776 13892788 0 0 Deletion 12 disruptive_inframe_deletion HET LOC_Os08g23070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2922-S Chr8 2216268 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2922-S Chr8 23667308 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2922-S Chr8 27473212 27473257 0 0 Deletion 45 downstream_gene_variant HET FN2922-S Chr8 6341622 Chr3 35852681 0 Translocation 0 FN2922-S Chr8 7005098 7005156 0 0 Deletion 58 upstream_gene_variant HET FN2922-S Chr8 8223996 8224003 0 0 Deletion 7 INTERGENIC HET FN2922-S Chr9 136674 136675 0 0 Deletion 1 upstream_gene_variant HET FN2922-S Chr9 1621244 1621246 0 0 Deletion 2 upstream_gene_variant HET FN2922-S Chr9 18819167 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2922-S Chr9 19071659 Chr7 13538265 0 Translocation 0 FN2922-S Chr9 19071665 Chr7 13346217 0 Translocation 0 FN2922-S Chr9 19218618 T-A 0 0 Single Base Substitution 0 INTRON HET FN2922-S Chr9 3908184 3908197 0 0 Deletion 13 downstream_gene_variant HET FN2922-S Chr9 5238432 Chr4 12976278 0 Translocation 0 FN2922-S Chr9 6014066 6014066 0 0 Insertion 76 upstream_gene_variant HET FN2922-S Chr9 8521780 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2922-S Chr9 94509 94509 0 0 Insertion 2 downstream_gene_variant HET FN2922-S Chr9 9531147 C-T 0 0 Single Base Substitution 0 SPLICE_SITE_DONOR HET LOC_Os09g15610 transposon protein, putative, CACTA, En/Spm sub-class