FN2929-S Chr1 16345631 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr1 17597699 17597707 0 0 Deletion 8 INTERGENIC HET FN2929-S Chr1 19408001 19436000 0 0 Deletion 27999 LOC_Os01g35070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr1 19408001 19436000 0 0 Deletion 27999 LOC_Os01g35080 retrotransposon protein, putative, unclassified FN2929-S Chr1 19408001 19436000 0 0 Deletion 27999 LOC_Os01g35090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr1 19408001 19436000 0 0 Deletion 27999 LOC_Os01g35100 zinc finger, C3HC4 type domain containing protein, expressed FN2929-S Chr1 19628001 19648000 0 0 Deletion 19999 LOC_Os01g35480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr1 19628001 19648000 0 0 Deletion 19999 LOC_Os01g35490 retrotransposon protein, putative, Ty3-gypsy subclass FN2929-S Chr1 19628001 19648000 0 0 Deletion 19999 LOC_Os01g35504 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr1 19628001 19648000 0 0 Deletion 19999 LOC_Os01g35600 retrotransposon protein, putative, unclassified FN2929-S Chr1 20636001 20662000 0 0 Deletion 25999 LOC_Os01g37000 carboxyl-terminal peptidase, putative, expressed FN2929-S Chr1 20636001 20662000 0 0 Deletion 25999 LOC_Os01g37020 carboxyl-terminal peptidase, putative, expressed FN2929-S Chr1 20636001 20662000 0 0 Deletion 25999 LOC_Os01g37030 conserved hypothetical protein FN2929-S Chr1 20636001 20662000 0 0 Deletion 25999 LOC_Os01g37842 expressed protein FN2929-S Chr1 28807960 28807969 0 0 Deletion 9 upstream_gene_variant HET FN2929-S Chr1 3031000 3031013 0 0 Deletion 13 FRAME_SHIFT HET LOC_Os01g06390 expressed protein FN2929-S Chr1 32286857 32286861 0 0 Deletion 4 INTERGENIC HET FN2929-S Chr1 406158 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr1 40789597 40789598 0 0 Deletion 1 downstream_gene_variant HET FN2929-S Chr1 41084381 41084386 0 0 Deletion 5 INTERGENIC HOMO FN2929-S Chr1 6524639 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr1 8241519 8241519 0 0 Insertion 2 downstream_gene_variant HET FN2929-S Chr1 8347668 8347672 0 0 Deletion 4 INTERGENIC HET FN2929-S Chr10 12136001 12149000 0 0 Deletion 12999 LOC_Os10g23260 hypothetical protein FN2929-S Chr10 12136001 12149000 0 0 Deletion 12999 LOC_Os10g23270 transposon protein, putative, unclassified FN2929-S Chr10 14454256 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr10 16892501 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr10 4680001 4732000 0 0 Deletion 51999 LOC_Os10g08630 expressed protein FN2929-S Chr10 4680001 4732000 0 0 Deletion 51999 LOC_Os10g08640 expressed protein FN2929-S Chr10 4680001 4732000 0 0 Deletion 51999 LOC_Os10g08650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr10 4680001 4732000 0 0 Deletion 51999 LOC_Os10g08660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr10 4680001 4732000 0 0 Deletion 51999 LOC_Os10g08670 chalcone synthase, putative, expressed FN2929-S Chr10 4680001 4732000 0 0 Deletion 51999 LOC_Os10g08680 conserved hypothetical protein FN2929-S Chr10 4680001 4732000 0 0 Deletion 51999 LOC_Os10g08690 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr10 4680001 4732000 0 0 Deletion 51999 LOC_Os10g08696 retrotransposon protein, putative, Ty3-gypsy subclass FN2929-S Chr10 4680001 4732000 0 0 Deletion 51999 LOC_Os10g08702 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr10 4680001 4732000 0 0 Deletion 51999 LOC_Os10g08710 chalcone synthase, putative, expressed FN2929-S Chr10 5384461 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2929-S Chr10 6190001 6219000 0 0 Deletion 28999 LOC_Os10g11180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr10 6190001 6219000 0 0 Deletion 28999 LOC_Os10g11190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr10 6190001 6219000 0 0 Deletion 28999 LOC_Os10g11200 aminotransferase, classes I and II, domain containing protein, expressed FN2929-S Chr10 6190001 6219000 0 0 Deletion 28999 LOC_Os10g11210 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr10 6227267 6227267 0 0 Insertion 30 upstream_gene_variant HET FN2929-S Chr10 8074001 8088000 0 0 Deletion 13999 LOC_Os10g15160 conserved hypothetical protein FN2929-S Chr10 8074001 8088000 0 0 Deletion 13999 LOC_Os10g16950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr11 1020001 1047000 0 0 Deletion 26999 LOC_Os11g02950 auxin efflux carrier component, putative, expressed FN2929-S Chr11 1020001 1047000 0 0 Deletion 26999 LOC_Os11g02964 FAR1 family protein, expressed FN2929-S Chr11 1020001 1047000 0 0 Deletion 26999 LOC_Os11g02980 expressed protein FN2929-S Chr11 1020001 1047000 0 0 Deletion 26999 LOC_Os11g02990 conserved hypothetical protein FN2929-S Chr11 1020001 1047000 0 0 Deletion 26999 LOC_Os11g03000 retrotransposon protein, putative, unclassified FN2929-S Chr11 1020001 1047000 0 0 Deletion 26999 LOC_Os11g03010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr11 1032498 1032498 0 0 Insertion 1 intron_variant HET FN2929-S Chr11 11307001 11330000 0 0 Deletion 22999 LOC_Os11g19620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr11 11307001 11330000 0 0 Deletion 22999 LOC_Os11g19630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr11 11307001 11330000 0 0 Deletion 22999 LOC_Os11g19640 retrotransposon protein, putative, Ty3-gypsy subclass FN2929-S Chr11 11307001 11330000 0 0 Deletion 22999 LOC_Os11g19650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr11 11307001 11330000 0 0 Deletion 22999 LOC_Os11g19660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr11 11307001 11330000 0 0 Deletion 22999 LOC_Os11g19670 retrotransposon protein, putative, unclassified FN2929-S Chr11 12004788 12005556 0 0 Inversion 768 FN2929-S Chr11 1203001 1231000 0 0 Deletion 27999 LOC_Os11g03280 transposon protein, putative, unclassified, expressed FN2929-S Chr11 1203001 1231000 0 0 Deletion 27999 LOC_Os11g03290 nucleoside-triphosphatase, putative, expressed FN2929-S Chr11 1203001 1231000 0 0 Deletion 27999 LOC_Os11g04104 major facilitator superfamily antiporter, putative, expressed FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g24840 ankyrin repeat family protein, putative, expressed FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g24850 ankyrin repeat domain containing protein, expressed FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g24860 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g24870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g24880 transposon protein, putative, CACTA, En/Spm sub-class FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g24890 expressed protein FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g24900 expressed protein FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g24910 hypothetical protein FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g24920 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g24930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g24940 expressed protein FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g24950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g24964 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g24980 hypothetical protein FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g24990 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g25000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g25010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr11 14156001 14246000 0 0 Deletion 89999 LOC_Os11g25060 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN2929-S Chr11 15511945 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr11 17678344 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2929-S Chr11 17989822 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr11 26620001 26644000 0 0 Deletion 23999 LOC_Os11g44050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr11 26620001 26644000 0 0 Deletion 23999 LOC_Os11g44060 retrotransposon protein, putative, Ty3-gypsy subclass FN2929-S Chr11 26620001 26644000 0 0 Deletion 23999 LOC_Os11g44070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr11 26620001 26644000 0 0 Deletion 23999 LOC_Os11g44084 transposon protein, putative, CACTA, En/Spm sub-class FN2929-S Chr11 26620001 26644000 0 0 Deletion 23999 LOC_Os11g44100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr11 26620001 26644000 0 0 Deletion 23999 LOC_Os11g44110 expressed protein FN2929-S Chr11 26620001 26644000 0 0 Deletion 23999 LOC_Os11g44120 hypothetical protein FN2929-S Chr11 5592439 5592439 0 0 Insertion 1 FRAME_SHIFT HOMO LOC_Os11g10300 OsFBX415 - F-box domain containing protein, expressed FN2929-S Chr12 15405001 15415000 0 0 Deletion 9999 LOC_Os12g26380 dirigent, putative, expressed FN2929-S Chr12 15405001 15415000 0 0 Deletion 9999 LOC_Os12g27080 expressed protein FN2929-S Chr12 15864001 15893000 0 0 Deletion 28999 LOC_Os12g27096 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2929-S Chr12 15864001 15893000 0 0 Deletion 28999 LOC_Os12g27190 expressed protein FN2929-S Chr12 16420229 16420237 0 0 Deletion 8 INTERGENIC HOMO FN2929-S Chr12 16457001 16472000 0 0 Deletion 14999 LOC_Os12g27930 expressed protein FN2929-S Chr12 16457001 16472000 0 0 Deletion 14999 LOC_Os12g27940 expressed protein FN2929-S Chr12 18257001 18279000 0 0 Deletion 21999 LOC_Os12g30440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr12 18257001 18279000 0 0 Deletion 21999 LOC_Os12g30444 hypothetical protein FN2929-S Chr12 18257001 18279000 0 0 Deletion 21999 LOC_Os12g30450 expressed protein FN2929-S Chr12 19384001 19420000 0 0 Deletion 35999 LOC_Os12g32150 expressed protein FN2929-S Chr12 19384001 19420000 0 0 Deletion 35999 LOC_Os12g32160 expressed protein FN2929-S Chr12 19384001 19420000 0 0 Deletion 35999 LOC_Os12g32170 expressed protein FN2929-S Chr12 19384001 19420000 0 0 Deletion 35999 LOC_Os12g32400 helix-loop-helix DNA-binding domain containing protein, expressed FN2929-S Chr12 21735001 21768000 0 0 Deletion 32999 LOC_Os12g35720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr12 21735001 21768000 0 0 Deletion 32999 LOC_Os12g35730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr12 21735001 21768000 0 0 Deletion 32999 LOC_Os12g35740 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2929-S Chr12 21735001 21768000 0 0 Deletion 32999 LOC_Os12g35750 expressed protein FN2929-S Chr12 22893626 G-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os12g37300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr12 6861001 6886000 0 0 Deletion 24999 LOC_Os12g12470 NADP-dependent oxidoreductase, putative, expressed FN2929-S Chr12 6861001 6886000 0 0 Deletion 24999 LOC_Os12g12480 retrotransposon protein, putative, unclassified FN2929-S Chr12 6861001 6886000 0 0 Deletion 24999 LOC_Os12g12490 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr12 6861001 6886000 0 0 Deletion 24999 LOC_Os12g12590 NADP-dependent oxidoreductase, putative, expressed FN2929-S Chr12 7743719 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr2 11267001 11282000 0 0 Deletion 14999 LOC_Os02g19290 expressed protein FN2929-S Chr2 11267001 11282000 0 0 Deletion 14999 LOC_Os02g19300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr2 11267001 11282000 0 0 Deletion 14999 LOC_Os02g19850 hAT dimerisation domain-containing protein, putative, expressed FN2929-S Chr2 14373001 14386000 0 0 Deletion 12999 LOC_Os02g24790 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr2 14373001 14386000 0 0 Deletion 12999 LOC_Os02g25170 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr2 146247 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr2 146248 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr2 146249 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr2 14704001 14723000 0 0 Deletion 18999 LOC_Os02g25260 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr2 14704001 14723000 0 0 Deletion 18999 LOC_Os02g25270 expressed protein FN2929-S Chr2 14704001 14723000 0 0 Deletion 18999 LOC_Os02g25540 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr2 16623606 C-T 0 0 Single Base Substitution 0 INTRON HET FN2929-S Chr2 22114001 22146000 0 0 Deletion 31999 LOC_Os02g36640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr2 22114001 22146000 0 0 Deletion 31999 LOC_Os02g36650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr2 22114001 22146000 0 0 Deletion 31999 LOC_Os02g36660 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr2 22114001 22146000 0 0 Deletion 31999 LOC_Os02g36670 expressed protein FN2929-S Chr2 22114001 22146000 0 0 Deletion 31999 LOC_Os02g36680 expressed protein FN2929-S Chr2 22114001 22146000 0 0 Deletion 31999 LOC_Os02g36690 expressed protein FN2929-S Chr2 22114001 22146000 0 0 Deletion 31999 LOC_Os02g36940 uncharacterized Cys-rich domain containing protein, putative, expressed FN2929-S Chr2 24846001 24859000 0 0 Deletion 12999 LOC_Os02g41510 MYB family transcription factor, putative, expressed FN2929-S Chr2 25112047 25112064 0 0 Deletion 17 INTRON HOMO FN2929-S Chr2 25167600 25167601 0 0 Deletion 1 downstream_gene_variant HET FN2929-S Chr2 27476566 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr2 29039243 C-T 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os02g47530 expressed protein FN2929-S Chr2 32469048 32469056 0 0 Deletion 8 INTERGENIC HOMO FN2929-S Chr2 5455872 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr2 9074562 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr3 11157164 11157164 0 0 Insertion 2 upstream_gene_variant HET FN2929-S Chr3 12944826 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr3 13615927 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g23990 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr3 1364795 1364796 0 0 Deletion 1 frameshift_variant HET LOC_Os03g03210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr3 1368044 1368044 0 0 Insertion 1 frameshift_variant HET LOC_Os03g03210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr3 14459260 14459268 0 0 Deletion 8 INTERGENIC HOMO FN2929-S Chr3 14947373 14947378 0 0 Deletion 5 INTRON HOMO FN2929-S Chr3 17667892 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2929-S Chr3 17832414 17832414 0 0 Insertion 7 UTR_5_PRIME HET FN2929-S Chr3 20699001 20737000 0 0 Deletion 37999 LOC_Os03g37360 expressed protein FN2929-S Chr3 20699001 20737000 0 0 Deletion 37999 LOC_Os03g37377 retrotransposon protein, putative, unclassified FN2929-S Chr3 20699001 20737000 0 0 Deletion 37999 LOC_Os03g37394 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr3 20699001 20737000 0 0 Deletion 37999 LOC_Os03g37411 MATE efflux family protein, putative, expressed FN2929-S Chr3 20699001 20737000 0 0 Deletion 37999 LOC_Os03g38070 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr3 21100918 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2929-S Chr3 21100919 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2929-S Chr3 2237470 2237472 0 0 Deletion 2 INTERGENIC HET FN2929-S Chr3 24076001 24111000 0 0 Deletion 34999 LOC_Os03g43160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr3 24076001 24111000 0 0 Deletion 34999 LOC_Os03g43169 retrotransposon protein, putative, Ty3-gypsy subclass FN2929-S Chr3 24076001 24111000 0 0 Deletion 34999 LOC_Os03g43180 transposon protein, putative, unclassified, expressed FN2929-S Chr3 24076001 24111000 0 0 Deletion 34999 LOC_Os03g43190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr3 24076001 24111000 0 0 Deletion 34999 LOC_Os03g43200 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr3 24076001 24111000 0 0 Deletion 34999 LOC_Os03g43210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr3 24076001 24111000 0 0 Deletion 34999 LOC_Os03g43220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr3 24076001 24111000 0 0 Deletion 34999 LOC_Os03g43230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr3 24076001 24111000 0 0 Deletion 34999 LOC_Os03g43235 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr3 25385053 25385054 0 0 Deletion 1 INTERGENIC HET FN2929-S Chr3 25644115 T-C 0 0 Single Base Substitution 0 INTRON HET FN2929-S Chr3 30125001 30175000 0 0 Deletion 49999 LOC_Os03g52510 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr3 30125001 30175000 0 0 Deletion 49999 LOC_Os03g52520 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr3 30125001 30175000 0 0 Deletion 49999 LOC_Os03g52530 retrotransposon protein, putative, Ty3-gypsy subclass FN2929-S Chr3 30125001 30175000 0 0 Deletion 49999 LOC_Os03g52540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr3 30125001 30175000 0 0 Deletion 49999 LOC_Os03g52550 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr3 30125001 30175000 0 0 Deletion 49999 LOC_Os03g52560 glycosyl hydrolases, putative, expressed FN2929-S Chr3 30125001 30175000 0 0 Deletion 49999 LOC_Os03g52570 glycerol-3-phosphate acyltransferase, putative, expressed FN2929-S Chr3 30125001 30175000 0 0 Deletion 49999 LOC_Os03g52594 CCR4-NOT transcription factor, putative, expressed FN2929-S Chr3 4618180 4618183 0 0 Deletion 3 UTR_5_PRIME HET FN2929-S Chr3 4783391 4783392 0 0 Deletion 1 INTERGENIC HET FN2929-S Chr4 10383840 10383840 0 0 Insertion 1 upstream_gene_variant HET FN2929-S Chr4 10862001 10886000 0 0 Deletion 23999 LOC_Os04g19510 retrotransposon protein, putative, unclassified FN2929-S Chr4 10862001 10886000 0 0 Deletion 23999 LOC_Os04g19520 retrotransposon protein, putative, Ty3-gypsy subclass FN2929-S Chr4 10862001 10886000 0 0 Deletion 23999 LOC_Os04g19530 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr4 10862001 10886000 0 0 Deletion 23999 LOC_Os04g19540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr4 13158801 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr4 13544345 13544345 0 0 Insertion 1 upstream_gene_variant HET FN2929-S Chr4 14826498 14826498 0 0 Insertion 120 inframe_insertion HET LOC_Os04g25570 protein phosphatase 2C, putative, expressed FN2929-S Chr4 15697810 15697811 0 0 Deletion 1 intergenic_region HET FN2929-S Chr4 23501980 23504495 0 0 Inversion 2515 FN2929-S Chr4 23502007 23504502 0 0 Inversion 2495 FN2929-S Chr4 2660788 2660789 0 0 Deletion 1 upstream_gene_variant HET FN2929-S Chr4 2806199 2806203 0 0 Deletion 4 INTERGENIC HET FN2929-S Chr4 28378001 28389000 0 0 Deletion 10999 LOC_Os04g48210 cytochrome P450, putative, expressed FN2929-S Chr4 2858320 2858320 0 0 Insertion 2 upstream_gene_variant HET FN2929-S Chr4 31725916 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr4 353144 353156 0 0 Deletion 12 INTERGENIC HOMO FN2929-S Chr4 9503001 9520000 0 0 Deletion 16999 LOC_Os04g17350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr4 9503001 9520000 0 0 Deletion 16999 LOC_Os04g17360 retrotransposon protein, putative, Ty3-gypsy subclass FN2929-S Chr4 9503001 9520000 0 0 Deletion 16999 LOC_Os04g17370 retrotransposon protein, putative, Ty3-gypsy subclass FN2929-S Chr4 9503001 9520000 0 0 Deletion 16999 LOC_Os04g17380 retrotransposon protein, putative, Ty3-gypsy subclass FN2929-S Chr4 9503001 9520000 0 0 Deletion 16999 LOC_Os04g17390 retrotransposon protein, putative, Ty3-gypsy subclass FN2929-S Chr4 9503001 9520000 0 0 Deletion 16999 LOC_Os04g17400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr4 9503001 9520000 0 0 Deletion 16999 LOC_Os04g18470 retrotransposon, putative, centromere-specific, expressed FN2929-S Chr5 1029001 1047000 0 0 Deletion 17999 LOC_Os05g02860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr5 1029001 1047000 0 0 Deletion 17999 LOC_Os05g02870 white-brown complex homolog protein, putative, expressed FN2929-S Chr5 1029001 1047000 0 0 Deletion 17999 LOC_Os05g02880 splicing factor, arginine/serine-rich 7, putative, expressed FN2929-S Chr5 1029001 1047000 0 0 Deletion 17999 LOC_Os05g04420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr5 10971001 11021000 0 0 Deletion 49999 LOC_Os05g18900 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr5 10971001 11021000 0 0 Deletion 49999 LOC_Os05g18910 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr5 10971001 11021000 0 0 Deletion 49999 LOC_Os05g18920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr5 10971001 11021000 0 0 Deletion 49999 LOC_Os05g18930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr5 10971001 11021000 0 0 Deletion 49999 LOC_Os05g18940 STIGL3 - Stigma-specific Stig1 family protein precursor, putative, expressed FN2929-S Chr5 10971001 11021000 0 0 Deletion 49999 LOC_Os05g18950 pentatricopeptide, putative, expressed FN2929-S Chr5 10971001 11021000 0 0 Deletion 49999 LOC_Os05g18960 expressed protein FN2929-S Chr5 10971001 11021000 0 0 Deletion 49999 LOC_Os05g18970 expressed protein FN2929-S Chr5 10971001 11021000 0 0 Deletion 49999 LOC_Os05g18980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr5 10971001 11021000 0 0 Deletion 49999 LOC_Os05g18990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr5 15518001 15535000 0 0 Deletion 16999 LOC_Os05g26750 PROLM17 - Prolamin precursor, expressed FN2929-S Chr5 15518001 15535000 0 0 Deletion 16999 LOC_Os05g26760 expressed protein FN2929-S Chr5 15518001 15535000 0 0 Deletion 16999 LOC_Os05g26770 PROLM18 - Prolamin precursor, expressed FN2929-S Chr5 15518001 15535000 0 0 Deletion 16999 LOC_Os05g26954 saposin-like type B, region 1 family protein, putative, expressed FN2929-S Chr5 19553001 19575000 0 0 Deletion 21999 LOC_Os05g33340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr5 19553001 19575000 0 0 Deletion 21999 LOC_Os05g33620 expressed protein FN2929-S Chr5 2031001 2051000 0 0 Deletion 19999 LOC_Os05g04420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr5 2031001 2051000 0 0 Deletion 19999 LOC_Os05g04430 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr5 2031001 2051000 0 0 Deletion 19999 LOC_Os05g04440 peroxidase precursor, putative, expressed FN2929-S Chr5 2031001 2051000 0 0 Deletion 19999 LOC_Os05g04450 peroxidase precursor, putative, expressed FN2929-S Chr5 26102001 26149000 0 0 Deletion 46999 LOC_Os05g44916 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed FN2929-S Chr5 26102001 26149000 0 0 Deletion 46999 LOC_Os05g44922 6-phosphofructokinase, putative, expressed FN2929-S Chr5 26102001 26149000 0 0 Deletion 46999 LOC_Os05g44930 receptor-like protein kinase, putative, expressed FN2929-S Chr5 26102001 26149000 0 0 Deletion 46999 LOC_Os05g44940 protein kinase domain containing protein, expressed FN2929-S Chr5 26102001 26149000 0 0 Deletion 46999 LOC_Os05g44950 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN2929-S Chr5 26102001 26149000 0 0 Deletion 46999 LOC_Os05g44960 expressed protein FN2929-S Chr5 26102001 26149000 0 0 Deletion 46999 LOC_Os05g44970 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN2929-S Chr5 29956352 29956354 0 0 Deletion 2 INTRON HET FN2929-S Chr5 7548020 7548065 0 0 Deletion 45 upstream_gene_variant HET FN2929-S Chr5 8238001 8252000 0 0 Deletion 13999 LOC_Os05g14750 AGC_PVPK_like_kin82y.12 - ACG kinases include homologs to PKA, PKG and PKC, expressed FN2929-S Chr6 10048768 10048768 0 0 Insertion 2 upstream_gene_variant HET FN2929-S Chr6 11004363 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2929-S Chr6 12115001 12149000 0 0 Deletion 33999 LOC_Os06g20960 SAM dependent carboxyl methyltransferase, putative, expressed FN2929-S Chr6 12115001 12149000 0 0 Deletion 33999 LOC_Os06g20970 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr6 12115001 12149000 0 0 Deletion 33999 LOC_Os06g20980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr6 12115001 12149000 0 0 Deletion 33999 LOC_Os06g20990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr6 12115001 12149000 0 0 Deletion 33999 LOC_Os06g21000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr6 12115001 12149000 0 0 Deletion 33999 LOC_Os06g21010 transposon protein, putative, unclassified, expressed FN2929-S Chr6 12115001 12149000 0 0 Deletion 33999 LOC_Os06g21020 methyltransferase, putative, expressed FN2929-S Chr6 12115001 12149000 0 0 Deletion 33999 LOC_Os06g21030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr6 12559001 12570000 0 0 Deletion 10999 LOC_Os06g21740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr6 12559001 12570000 0 0 Deletion 10999 LOC_Os06g22220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr6 13429577 13429585 0 0 Deletion 8 INTRON HET FN2929-S Chr6 13527335 13527337 0 0 Deletion 2 INTRON HOMO FN2929-S Chr6 14122001 14152000 0 0 Deletion 29999 LOC_Os06g24150 retrotransposon protein, putative, Ty3-gypsy subclass FN2929-S Chr6 14122001 14152000 0 0 Deletion 29999 LOC_Os06g24160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr6 14122001 14152000 0 0 Deletion 29999 LOC_Os06g24170 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr6 14122001 14152000 0 0 Deletion 29999 LOC_Os06g24180 cytochrome P450 84A1, putative, expressed FN2929-S Chr6 15806001 15825000 0 0 Deletion 18999 LOC_Os06g27890 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed FN2929-S Chr6 15806001 15825000 0 0 Deletion 18999 LOC_Os06g28310 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr6 17029001 17067000 0 0 Deletion 37999 LOC_Os06g29679 expressed protein FN2929-S Chr6 17029001 17067000 0 0 Deletion 37999 LOC_Os06g29690 dynein light chain type 1 domain containing protein, expressed FN2929-S Chr6 17029001 17067000 0 0 Deletion 37999 LOC_Os06g29700 OsFBD11 - F-box and FBD domain containing protein, expressed FN2929-S Chr6 17029001 17067000 0 0 Deletion 37999 LOC_Os06g29710 OsFBD12 - F-box and FBD domain containing protein, expressed FN2929-S Chr6 17029001 17067000 0 0 Deletion 37999 LOC_Os06g29730 RALFL28 - Rapid ALkalinization Factor RALF family protein precursor, expressed FN2929-S Chr6 17317001 17339000 0 0 Deletion 21999 LOC_Os06g30070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr6 17317001 17339000 0 0 Deletion 21999 LOC_Os06g30080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr6 17317001 17339000 0 0 Deletion 21999 LOC_Os06g30510 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr6 25377846 25377847 0 0 Deletion 1 upstream_gene_variant HET FN2929-S Chr6 29260603 29260604 0 0 Deletion 1 downstream_gene_variant HET FN2929-S Chr6 3715001 3757000 0 0 Deletion 41999 LOC_Os06g07690 expressed protein FN2929-S Chr6 3715001 3757000 0 0 Deletion 41999 LOC_Os06g07700 expressed protein FN2929-S Chr6 3715001 3757000 0 0 Deletion 41999 LOC_Os06g07710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr6 3715001 3757000 0 0 Deletion 41999 LOC_Os06g07720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr6 3715001 3757000 0 0 Deletion 41999 LOC_Os06g07730 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr6 3715001 3757000 0 0 Deletion 41999 LOC_Os06g07740 myb-like DNA-binding domain, SHAQKYF class family protein, expressed FN2929-S Chr6 3715001 3757000 0 0 Deletion 41999 LOC_Os06g07750 expressed protein FN2929-S Chr6 5874216 5874220 0 0 Deletion 4 SPLICE_SITE_REGION HET FN2929-S Chr6 6841476 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2929-S Chr6 9119001 9156000 0 0 Deletion 36999 LOC_Os06g16040 expressed protein FN2929-S Chr6 9119001 9156000 0 0 Deletion 36999 LOC_Os06g16050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr6 9119001 9156000 0 0 Deletion 36999 LOC_Os06g16060 zinc finger, C3HC4 type domain containing protein, expressed FN2929-S Chr6 9119001 9156000 0 0 Deletion 36999 LOC_Os06g16070 receptor-like protein kinase 2 precursor, putative, expressed FN2929-S Chr6 9119001 9156000 0 0 Deletion 36999 LOC_Os06g16080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr6 9119001 9156000 0 0 Deletion 36999 LOC_Os06g16200 proteins of unknown function domain containing protein, expressed FN2929-S Chr6 9293649 9293650 0 0 Deletion 1 upstream_gene_variant HET FN2929-S Chr7 11781747 T-C 0 0 Single Base Substitution 0 INTRON HET FN2929-S Chr7 12260562 12260563 0 0 Deletion 1 intergenic_region HET FN2929-S Chr7 14384250 14384250 0 0 Insertion 33 upstream_gene_variant HET FN2929-S Chr7 14843846 14843846 0 0 Insertion 1 upstream_gene_variant HET FN2929-S Chr7 22695001 22707000 0 0 Deletion 11999 LOC_Os07g37860 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr7 22695001 22707000 0 0 Deletion 11999 LOC_Os07g39450 expressed protein FN2929-S Chr7 25312166 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr7 25901536 25901543 0 0 Deletion 7 INTERGENIC HET FN2929-S Chr7 6624596 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2929-S Chr7 9373879 9373879 0 0 Insertion 2 upstream_gene_variant HET FN2929-S Chr8 1137588 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr8 15521857 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr8 16458425 16458425 0 0 Insertion 14 downstream_gene_variant HET FN2929-S Chr8 16650817 16650817 0 0 Insertion 1 upstream_gene_variant HET FN2929-S Chr8 17457001 17479000 0 0 Deletion 21999 LOC_Os08g28590 transposon protein, putative, CACTA, En/Spm sub-class FN2929-S Chr8 17457001 17479000 0 0 Deletion 21999 LOC_Os08g28600 resistance protein, putative, expressed FN2929-S Chr8 17457001 17479000 0 0 Deletion 21999 LOC_Os08g28620 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr8 18652001 18675000 0 0 Deletion 22999 LOC_Os08g30310 transposon protein, putative, CACTA, En/Spm sub-class FN2929-S Chr8 18652001 18675000 0 0 Deletion 22999 LOC_Os08g30320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr8 18652001 18675000 0 0 Deletion 22999 LOC_Os08g30330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr8 18843001 18863000 0 0 Deletion 19999 LOC_Os08g30590 C1-like domain containing protein, expressed FN2929-S Chr8 18843001 18863000 0 0 Deletion 19999 LOC_Os08g30600 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr8 20962475 20962475 0 0 Insertion 1 frameshift_variant HET LOC_Os08g33570 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr8 21370001 21392000 0 0 Deletion 21999 LOC_Os08g34100 conserved hypothetical protein FN2929-S Chr8 21370001 21392000 0 0 Deletion 21999 LOC_Os08g34110 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2929-S Chr8 21370001 21392000 0 0 Deletion 21999 LOC_Os08g34840 expressed protein FN2929-S Chr8 26456001 26481000 0 0 Deletion 24999 LOC_Os08g41900 expressed protein FN2929-S Chr8 26456001 26481000 0 0 Deletion 24999 LOC_Os08g41910 Sua5/YciO/YrdC/YwlC family protein, putative, expressed FN2929-S Chr8 28089917 28089917 0 0 Insertion 1 frameshift_variant HET LOC_Os08g44700 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr8 8421144 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2929-S Chr9 11017001 11055000 0 0 Deletion 37999 LOC_Os09g18010 expressed protein FN2929-S Chr9 11017001 11055000 0 0 Deletion 37999 LOC_Os09g18020 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN2929-S Chr9 11097001 11110000 0 0 Deletion 12999 LOC_Os09g18120 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr9 11097001 11110000 0 0 Deletion 12999 LOC_Os09g18130 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr9 11097001 11110000 0 0 Deletion 12999 LOC_Os09g18370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr9 11420116 11420116 0 0 Insertion 112 intron_variant HET FN2929-S Chr9 12853001 12863000 0 0 Deletion 9999 LOC_Os09g21320 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr9 12853001 12863000 0 0 Deletion 9999 LOC_Os09g21890 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr9 16868978 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2929-S Chr9 16880025 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2929-S Chr9 20916001 20936000 0 0 Deletion 19999 LOC_Os09g36260 expressed protein FN2929-S Chr9 20916001 20936000 0 0 Deletion 19999 LOC_Os09g36270 pantothenate kinase, putative, expressed FN2929-S Chr9 22463082 22463082 0 0 Insertion 12 upstream_gene_variant HET FN2929-S Chr9 3159849 3159849 0 0 Insertion 3 upstream_gene_variant HET FN2929-S Chr9 3591001 3603000 0 0 Deletion 11999 LOC_Os09g07420 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr9 4236001 4253000 0 0 Deletion 16999 LOC_Os09g08180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr9 4236001 4253000 0 0 Deletion 16999 LOC_Os09g08190 sulfotransferase domain containing protein, expressed FN2929-S Chr9 4763001 4799000 0 0 Deletion 35999 LOC_Os09g08970 expressed protein FN2929-S Chr9 4763001 4799000 0 0 Deletion 35999 LOC_Os09g08980 retrotransposon protein, putative, unclassified FN2929-S Chr9 4763001 4799000 0 0 Deletion 35999 LOC_Os09g08990 cytochrome P450, putative, expressed FN2929-S Chr9 4763001 4799000 0 0 Deletion 35999 LOC_Os09g09000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr9 4763001 4799000 0 0 Deletion 35999 LOC_Os09g10054 disease resistance protein RPS2, putative, expressed FN2929-S Chr9 5932773 5932857 0 0 Deletion 84 downstream_gene_variant HET FN2929-S Chr9 6121001 6172000 0 0 Deletion 50999 LOC_Os09g11030 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr9 6121001 6172000 0 0 Deletion 50999 LOC_Os09g11040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr9 6121001 6172000 0 0 Deletion 50999 LOC_Os09g11050 expressed protein FN2929-S Chr9 6121001 6172000 0 0 Deletion 50999 LOC_Os09g11060 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr9 6121001 6172000 0 0 Deletion 50999 LOC_Os09g11070 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2929-S Chr9 6121001 6172000 0 0 Deletion 50999 LOC_Os09g11080 retrotransposon protein, putative, Ty3-gypsy subclass FN2929-S Chr9 6121001 6172000 0 0 Deletion 50999 LOC_Os09g11090 expressed protein FN2929-S Chr9 6121001 6172000 0 0 Deletion 50999 LOC_Os09g11100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2929-S Chr9 6121001 6172000 0 0 Deletion 50999 LOC_Os09g11110 retrotransposon protein, putative, unclassified, expressed FN2929-S Chr9 6121001 6172000 0 0 Deletion 50999 LOC_Os09g11120 expressed protein FN2929-S Chr9 6121001 6172000 0 0 Deletion 50999 LOC_Os09g11130 hypothetical protein FN2929-S Chr9 6121001 6172000 0 0 Deletion 50999 LOC_Os09g11140 expressed protein FN2929-S Chr9 6121001 6172000 0 0 Deletion 50999 LOC_Os09g11320 expressed protein