FN2932-S Chr1 12062189 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2932-S Chr1 15240116 15240116 0 0 Insertion 6 intergenic_region HET FN2932-S Chr1 16773079 16773080 0 0 Deletion 1 intergenic_region HET FN2932-S Chr1 16978784 16978785 0 0 Deletion 1 upstream_gene_variant HET FN2932-S Chr1 17830214 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g32510 retrotransposon protein, putative, unclassified, expressed FN2932-S Chr1 24882499 24882552 0 0 Deletion 53 intergenic_region HET FN2932-S Chr1 25473002 25473002 0 0 Insertion 1 downstream_gene_variant HET FN2932-S Chr1 31952826 31952832 0 0 Deletion 6 upstream_gene_variant HET FN2932-S Chr10 10749526 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2932-S Chr10 1123389 1123398 0 0 Deletion 9 INTERGENIC HET FN2932-S Chr10 12592219 12592219 0 0 Insertion 1 upstream_gene_variant HET FN2932-S Chr10 17832413 Chr3 3544356 0 Translocation 0 LOC_Os03g06950 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed FN2932-S Chr10 19883996 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr10 2044503 Chr9 9544773 0 Translocation 0 FN2932-S Chr10 2488891 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g05069 lysosomal alpha-mannosidase precursor, putative, expressed FN2932-S Chr10 2911430 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr10 3167516 3167516 0 0 Insertion 1 upstream_gene_variant HET FN2932-S Chr10 3303955 3303956 0 0 Deletion 1 frameshift_variant HET LOC_Os10g06430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2932-S Chr10 8093846 8093893 0 0 Deletion 47 intergenic_region HET FN2932-S Chr10 8452042 8452042 0 0 Insertion 1 intron_variant HET FN2932-S Chr10 9794387 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2932-S Chr10 9880559 Chr6 4103940 0 Translocation 0 FN2932-S Chr11 10628263 10628265 0 0 Deletion 2 intergenic_region HET FN2932-S Chr11 11561865 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr11 13643965 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr11 13877673 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr11 1575576 1575577 0 0 Deletion 1 intron_variant HET FN2932-S Chr11 16584250 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr11 23491751 C-T 0 0 Single Base Substitution 0 INTRON HET FN2932-S Chr11 24871543 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2932-S Chr11 26026452 26026456 0 0 Deletion 4 upstream_gene_variant HET FN2932-S Chr11 27724232 A-G 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2932-S Chr11 7278190 Chr10 21102618 0 Translocation 0 FN2932-S Chr11 9959543 9959543 0 0 Insertion 1 upstream_gene_variant HET FN2932-S Chr12 12614810 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g22340 retrotransposon protein, putative, Ty3-gypsy subclass FN2932-S Chr12 14612028 14612071 0 0 Deletion 43 upstream_gene_variant HET FN2932-S Chr12 20563362 20563372 0 0 Deletion 10 downstream_gene_variant HET FN2932-S Chr12 20748693 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr12 22030306 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2932-S Chr12 24276103 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr12 24440640 G-A 0 0 Single Base Substitution 0 INTRON HET FN2932-S Chr12 4130678 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr12 4130679 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr12 9888309 G-A 0 0 Single Base Substitution 0 INTRON HET FN2932-S Chr2 11865621 C-G 0 0 Single Base Substitution 0 INTRON HET FN2932-S Chr2 13693680 13693687 0 0 Deletion 7 intergenic_region HET FN2932-S Chr2 2106504 2106504 0 0 Insertion 2 UTR_5_PRIME HET FN2932-S Chr2 21203001 21217000 0 0 Deletion 13999 LOC_Os02g35290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2932-S Chr2 21203001 21217000 0 0 Deletion 13999 LOC_Os02g36619 exo70 exocyst complex subunit, putative, expressed FN2932-S Chr2 25106384 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2932-S Chr2 25861926 25861933 0 0 Deletion 7 INTERGENIC HET FN2932-S Chr2 32674158 32674158 0 0 Insertion 1 upstream_gene_variant HET FN2932-S Chr2 6689329 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2932-S Chr2 7063228 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g13260 F-box family protein, putative, expressed FN2932-S Chr2 7992698 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2932-S Chr2 9636153 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr3 10968548 10968549 0 0 Deletion 1 INTRON HOMO FN2932-S Chr3 14621758 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2932-S Chr3 1824208 A-C 0 0 Single Base Substitution 0 INTRON HET FN2932-S Chr3 18954854 18954857 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os03g33130 retrotransposon protein, putative, Ty3-gypsy subclass FN2932-S Chr3 25577455 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2932-S Chr3 26131464 26131470 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os03g46220 retrotransposon protein, putative, unclassified, expressed FN2932-S Chr3 3059637 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr3 32556952 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN2932-S Chr3 3546830 Chr1 4180783 0 Translocation 0 LOC_Os01g08470 retrotransposon protein, putative, unclassified, expressed FN2932-S Chr3 8934233 8934236 0 0 Deletion 3 INTERGENIC HET FN2932-S Chr4 10085542 10085542 0 0 Insertion 1 intron_variant HET FN2932-S Chr4 12042239 T-G 0 0 Single Base Substitution 0 INTRON HET FN2932-S Chr4 13041511 13041527 0 0 Deletion 16 frameshift_variant HET LOC_Os04g22980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2932-S Chr4 21000673 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2932-S Chr4 22838971 22838978 0 0 Deletion 7 INTRON HET FN2932-S Chr4 27736758 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g46790 expressed protein FN2932-S Chr4 29710723 29710724 0 0 Deletion 1 intron_variant HET FN2932-S Chr4 5298299 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr4 5403167 5403167 0 0 Insertion 1 INTRON HOMO FN2932-S Chr4 6817255 6817260 0 0 Deletion 5 INTERGENIC HET FN2932-S Chr4 8868693 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr5 1020192 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr5 10375062 10375062 0 0 Insertion 1 upstream_gene_variant HET FN2932-S Chr5 12246538 12246538 0 0 Insertion 1 upstream_gene_variant HET FN2932-S Chr5 15419406 15419407 0 0 Deletion 1 upstream_gene_variant HET FN2932-S Chr5 18300186 18300199 0 0 Deletion 13 upstream_gene_variant HET FN2932-S Chr5 18792768 18792768 0 0 Insertion 1 upstream_gene_variant HET FN2932-S Chr5 1956146 1956146 0 0 Insertion 4 upstream_gene_variant HET FN2932-S Chr5 22608733 22608733 0 0 Insertion 22 upstream_gene_variant HET FN2932-S Chr5 4699852 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g08580 hypothetical protein FN2932-S Chr5 5892956 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr5 745580 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2932-S Chr6 12395000 G-C 0 0 Single Base Substitution 0 INTRON HOMO FN2932-S Chr6 16378114 16378120 0 0 Deletion 6 upstream_gene_variant HET FN2932-S Chr6 2106912 2106912 0 0 Insertion 81 3_prime_UTR_variant HET FN2932-S Chr6 24081390 24081391 0 0 Deletion 1 INTERGENIC HOMO FN2932-S Chr7 17490359 17490362 0 0 Deletion 3 INTERGENIC HET FN2932-S Chr7 19030598 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr7 19030603 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr7 21810368 21810371 0 0 Deletion 3 INTERGENIC HET FN2932-S Chr7 27276651 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2932-S Chr7 28025065 28025065 0 0 Insertion 2 upstream_gene_variant HET FN2932-S Chr7 28604181 28604181 0 0 Insertion 1 upstream_gene_variant HET FN2932-S Chr7 4124573 4124573 0 0 Insertion 2 INTERGENIC HET FN2932-S Chr7 4989466 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN2932-S Chr8 13399014 Chr7 7949520 0 Translocation 0 FN2932-S Chr8 16921452 16921452 0 0 Insertion 3 upstream_gene_variant HET FN2932-S Chr8 27233614 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2932-S Chr8 6459636 6459638 0 0 Deletion 2 upstream_gene_variant HET FN2932-S Chr8 6648654 6648671 0 0 Deletion 17 upstream_gene_variant HET FN2932-S Chr8 6816915 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g11620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2932-S Chr8 6844173 6844173 0 0 Insertion 1 5_prime_UTR_variant HET FN2932-S Chr8 7461077 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2932-S Chr8 8556792 8556793 0 0 Deletion 1 upstream_gene_variant HET FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g21900 expressed protein FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g21910 retrotransposon protein, putative, unclassified, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g21919 expressed protein FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g21930 expressed protein FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g21940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g21950 retrotransposon protein, putative, Ty3-gypsy subclass FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g21960 transposon protein, putative, CACTA, En/Spm sub-class FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g21970 transposon protein, putative, CACTA, En/Spm sub-class FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g21980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g21990 transposon protein, putative, unclassified FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22000 hydrolase, HAD superfamily, Cof family, putative, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22020 retrotransposon protein, putative, unclassified, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22030 retrotransposon protein, putative, unclassified, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22040 expressed protein FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22050 expressed protein FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22060 transposon protein, putative, CACTA, En/Spm sub-class FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22070 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22090 mannose-6-phosphate isomerase, putative, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22100 retrotransposon protein, putative, unclassified, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22120 retrotransposon protein, putative, unclassified, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22130 expressed protein FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22140 expressed protein FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22150 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22160 expressed protein FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22200 transposon protein, putative, CACTA, En/Spm sub-class FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22210 retrotransposon, putative, centromere-specific, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2932-S Chr9 13253001 13453000 0 0 Deletion 199999 LOC_Os09g22240 hypothetical protein FN2932-S Chr9 13652001 13718000 0 0 Deletion 65999 LOC_Os09g23110 transporter family protein, putative, expressed FN2932-S Chr9 13652001 13718000 0 0 Deletion 65999 LOC_Os09g23120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2932-S Chr9 13652001 13718000 0 0 Deletion 65999 LOC_Os09g23130 retrotransposon protein, putative, unclassified, expressed FN2932-S Chr9 13652001 13718000 0 0 Deletion 65999 LOC_Os09g23140 endonuclease/exonuclease/phosphatase family domain containing protein, expressed FN2932-S Chr9 13652001 13718000 0 0 Deletion 65999 LOC_Os09g23150 monoglyceride lipase, putative, expressed FN2932-S Chr9 13652001 13718000 0 0 Deletion 65999 LOC_Os09g23160 annexin, putative, expressed FN2932-S Chr9 13652001 13718000 0 0 Deletion 65999 LOC_Os09g23170 expressed protein FN2932-S Chr9 13666770 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2932-S Chr9 13801855 13801855 0 0 Insertion 1 upstream_gene_variant HET FN2932-S Chr9 18423235 18423243 0 0 Deletion 8 INTERGENIC HOMO FN2932-S Chr9 18632402 18632403 0 0 Deletion 1 upstream_gene_variant HET FN2932-S Chr9 21038131 A-G 0 0 Single Base Substitution 0 START_GAINED HET FN2932-S Chr9 3607182 A-T 0 0 Single Base Substitution 0 INTRON HET FN2932-S Chr9 4517139 4517140 0 0 Deletion 1 downstream_gene_variant HET FN2932-S Chr9 8767856 8767856 0 0 Insertion 1 downstream_gene_variant HET FN2932-S Chr9 9957598 9957604 0 0 Deletion 6 INTERGENIC HOMO