FN2933-S Chr1 16643047 16643055 0 0 Deletion 8 INTERGENIC HOMO FN2933-S Chr1 26144378 26144381 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os01g46000 retrotransposon protein, putative, unclassified, expressed FN2933-S Chr1 26935317 26935317 0 0 Insertion 1 intergenic_region HET FN2933-S Chr1 29173556 29173556 0 0 Insertion 1 upstream_gene_variant HET FN2933-S Chr1 3173454 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2933-S Chr1 34579994 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2933-S Chr1 3902521 3902526 0 0 Deletion 5 upstream_gene_variant HET FN2933-S Chr1 3932511 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g08130 phototropic-responsive NPH3 family protein, putative, expressed FN2933-S Chr1 42849270 42849271 0 0 Deletion 1 downstream_gene_variant HET FN2933-S Chr10 18918265 Chr4 26474456 0 Translocation 0 LOC_Os10g35390 acyltransferase, putative, expressed FN2933-S Chr10 18918653 Chr4 26474458 0 Translocation 0 FN2933-S Chr10 4216222 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os10g07574 transposon protein, putative, unclassified, expressed FN2933-S Chr10 8111377 Chr9 19170310 0 Translocation 0 FN2933-S Chr10 9640125 9640126 0 0 Deletion 1 INTERGENIC HET FN2933-S Chr11 10882002 10882005 0 0 Deletion 3 INTERGENIC HOMO FN2933-S Chr11 10995148 10995150 0 0 Deletion 2 frameshift_variant HET LOC_Os11g19230 retrotransposon protein, putative, Ty1-copia subclass, expressed FN2933-S Chr11 11112086 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g19340 lipase, putative, expressed FN2933-S Chr11 11112087 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g19340 lipase, putative, expressed FN2933-S Chr11 14496679 Chr4 3485500 0 Translocation 0 FN2933-S Chr11 15180057 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2933-S Chr11 15906826 15906826 0 0 Insertion 2 INTERGENIC HET FN2933-S Chr11 21125946 21125946 0 0 Insertion 4 intergenic_region HET FN2933-S Chr11 24574566 24574567 0 0 Deletion 1 INTERGENIC HET FN2933-S Chr11 27757074 Chr4 3131190 0 Translocation 0 FN2933-S Chr11 3680139 Chr8 1215877 0 Translocation 0 FN2933-S Chr12 1249286 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2933-S Chr12 13724499 13724502 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os12g24120 retrotransposon protein, putative, unclassified FN2933-S Chr12 1556462 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2933-S Chr12 16443436 16443436 0 0 Insertion 1 upstream_gene_variant HET FN2933-S Chr12 17016686 17016687 0 0 Deletion 1 upstream_gene_variant HET FN2933-S Chr12 18132684 18132685 0 0 Deletion 1 frameshift_variant HET LOC_Os12g30214 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2933-S Chr12 22840796 22840812 0 0 Deletion 16 upstream_gene_variant HET FN2933-S Chr12 26396019 26396020 0 0 Deletion 1 downstream_gene_variant HET FN2933-S Chr12 449284 449285 0 0 Deletion 1 upstream_gene_variant HET FN2933-S Chr2 14106632 14106638 0 0 Deletion 6 INTERGENIC HET FN2933-S Chr2 1502631 1502632 0 0 Deletion 1 splice_acceptor_variant&intron_variant HET LOC_Os02g03630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2933-S Chr2 15658317 15658318 0 0 Deletion 1 upstream_gene_variant HET FN2933-S Chr2 18232028 18232028 0 0 Insertion 70 upstream_gene_variant HET FN2933-S Chr2 18419100 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2933-S Chr2 24778976 24778983 0 0 Deletion 7 upstream_gene_variant HET FN2933-S Chr2 25582495 25582496 0 0 Deletion 1 upstream_gene_variant HET FN2933-S Chr2 27001031 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2933-S Chr3 13862272 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2933-S Chr3 16624429 16624430 0 0 Deletion 1 upstream_gene_variant HET FN2933-S Chr3 18093366 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN2933-S Chr3 18093367 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN2933-S Chr3 2239385 2239388 0 0 Deletion 3 INTERGENIC HOMO FN2933-S Chr3 23393302 23393303 0 0 Deletion 1 intergenic_region HET FN2933-S Chr3 24364525 24364529 0 0 Deletion 4 intergenic_region HET FN2933-S Chr3 2606088 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2933-S Chr3 26111523 26111524 0 0 Deletion 1 upstream_gene_variant HET FN2933-S Chr3 26761919 26761919 0 0 Insertion 62 intron_variant HET FN2933-S Chr3 33054857 G-A 0 0 Single Base Substitution 0 INTRON HET FN2933-S Chr3 34562750 34562750 0 0 Insertion 93 upstream_gene_variant HET FN2933-S Chr4 13737263 13737263 0 0 Insertion 1 downstream_gene_variant HET FN2933-S Chr4 14143249 14143291 0 0 Deletion 42 inframe_deletion HET LOC_Os04g24630 retrotransposon protein, putative, unclassified, expressed FN2933-S Chr4 1730678 1730679 0 0 Deletion 1 downstream_gene_variant HET FN2933-S Chr4 18154102 18154123 0 0 Deletion 21 INTERGENIC HOMO FN2933-S Chr4 20379598 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2933-S Chr4 20379599 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2933-S Chr4 20800023 20800024 0 0 Deletion 1 INTERGENIC HOMO FN2933-S Chr4 2797684 2797685 0 0 Deletion 1 upstream_gene_variant HET FN2933-S Chr4 28636298 28636299 0 0 Deletion 1 upstream_gene_variant HET FN2933-S Chr4 29288240 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2933-S Chr4 29698542 29698543 0 0 Deletion 1 upstream_gene_variant HET FN2933-S Chr4 30148884 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2933-S Chr4 32264807 32264822 0 0 Deletion 15 frameshift_variant&splice_donor_variant&splice_region_variant&intron_variant HET LOC_Os04g54160 retrotransposon protein, putative, unclassified, expressed FN2933-S Chr4 480831 480831 0 0 Insertion 1 upstream_gene_variant HET FN2933-S Chr4 7294736 7294738 0 0 Deletion 2 upstream_gene_variant HET FN2933-S Chr4 7994877 7994877 0 0 Insertion 1 upstream_gene_variant HET FN2933-S Chr5 27654902 27654903 0 0 Deletion 1 upstream_gene_variant HET FN2933-S Chr5 639011 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2933-S Chr5 7498285 Chr2 19413192 0 Translocation 0 LOC_Os02g32690 pleiotropic drug resistance protein 15, putative, expressed FN2933-S Chr5 7498285 Chr2 19413192 0 Translocation 0 LOC_Os05g13520 white-brown complex homolog protein 12, putative, expressed FN2933-S Chr5 7498286 Chr2 19411398 0 Translocation 0 LOC_Os02g32690 pleiotropic drug resistance protein 15, putative, expressed FN2933-S Chr5 7498286 Chr2 19411398 0 Translocation 0 LOC_Os05g13520 white-brown complex homolog protein 12, putative, expressed FN2933-S Chr5 8681381 8681381 0 0 Insertion 4 upstream_gene_variant HET FN2933-S Chr6 11796000 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2933-S Chr6 15640401 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2933-S Chr6 19850144 19850160 0 0 Deletion 16 upstream_gene_variant HET FN2933-S Chr6 21926778 21926779 0 0 Deletion 1 downstream_gene_variant HET FN2933-S Chr6 27228525 T-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2933-S Chr7 11067876 11067893 0 0 Deletion 17 INTRON HET FN2933-S Chr7 13665813 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN2933-S Chr7 15395175 15395254 0 0 Deletion 79 intergenic_region HET FN2933-S Chr7 19131948 19132012 0 0 Deletion 64 upstream_gene_variant HET FN2933-S Chr7 20854229 20854229 0 0 Insertion 1 upstream_gene_variant HET FN2933-S Chr7 22435148 22435148 0 0 Insertion 41 upstream_gene_variant HET FN2933-S Chr7 27373654 27373655 0 0 Deletion 1 upstream_gene_variant HET FN2933-S Chr7 28131636 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2933-S Chr7 2834866 2834866 0 0 Insertion 1 downstream_gene_variant HET FN2933-S Chr7 2925306 2925339 0 0 Deletion 33 downstream_gene_variant HET FN2933-S Chr7 6543809 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2933-S Chr7 7458951 7458951 0 0 Insertion 1 upstream_gene_variant HET FN2933-S Chr7 7985056 Chr5 20661013 0 Translocation 0 FN2933-S Chr7 8441494 8441496 0 0 Deletion 2 upstream_gene_variant HET FN2933-S Chr8 12653086 12653086 0 0 Insertion 1 upstream_gene_variant HET FN2933-S Chr8 17016910 17016910 0 0 Insertion 1 upstream_gene_variant HET FN2933-S Chr8 17515866 17515866 0 0 Insertion 4 upstream_gene_variant HET FN2933-S Chr8 2133802 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2933-S Chr8 23101429 23101430 0 0 Deletion 1 upstream_gene_variant HET FN2933-S Chr8 3108923 3108927 0 0 Deletion 4 FRAME_SHIFT HOMO LOC_Os08g05800 retrotransposon protein, putative, unclassified, expressed FN2933-S Chr8 3462895 3462895 0 0 Insertion 1 frameshift_variant HET LOC_Os08g06280 LSD1 zinc finger domain containing protein, expressed FN2933-S Chr8 3463799 3463804 0 0 Deletion 5 5_prime_UTR_variant HET FN2933-S Chr9 10257668 10257669 0 0 Deletion 1 upstream_gene_variant HET FN2933-S Chr9 12787988 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2933-S Chr9 14318358 14318361 0 0 Deletion 3 upstream_gene_variant HET FN2933-S Chr9 9607572 9607583 0 0 Deletion 11 intergenic_region HET