FN2939-S Chr1 20169290 20169290 0 0 Insertion 2 upstream_gene_variant HET FN2939-S Chr1 32185290 32185290 0 0 Insertion 1 upstream_gene_variant HET FN2939-S Chr1 38240658 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2939-S Chr1 40508245 40508245 0 0 Insertion 111 downstream_gene_variant HET FN2939-S Chr1 7643828 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2939-S Chr10 14813865 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g28470 retrotransposon protein, putative, unclassified, expressed FN2939-S Chr10 2821743 2821743 0 0 Insertion 68 upstream_gene_variant HET FN2939-S Chr10 8077406 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2939-S Chr11 13151091 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2939-S Chr11 13788711 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2939-S Chr11 1398818 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2939-S Chr11 1398820 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2939-S Chr11 15613258 Chr9 749691 0 Translocation 0 FN2939-S Chr11 16460690 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2939-S Chr11 18758580 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2939-S Chr11 20626394 Chr10 1329135 0 Translocation 0 FN2939-S Chr11 21319112 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2939-S Chr11 26622462 26622463 0 0 Deletion 1 upstream_gene_variant HET FN2939-S Chr11 2845143 C-T 0 0 Single Base Substitution 0 INTRON HET FN2939-S Chr11 28863007 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2939-S Chr11 4272681 Chr10 9303963 0 Translocation 0 FN2939-S Chr11 595832 C-T 0 0 Single Base Substitution 0 INTRON HET FN2939-S Chr11 728668 Chr2 13225535 0 Translocation 0 FN2939-S Chr11 8006404 8006404 0 0 Insertion 56 downstream_gene_variant HET FN2939-S Chr11 9701675 9701677 0 0 Deletion 2 upstream_gene_variant HET FN2939-S Chr12 1720970 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g04110 pentatricopeptide, putative, expressed FN2939-S Chr12 21110106 21110108 0 0 Deletion 2 downstream_gene_variant HET FN2939-S Chr12 23212713 Chr4 22896146 0 Translocation 0 FN2939-S Chr12 23652369 23652370 0 0 Deletion 1 downstream_gene_variant HET FN2939-S Chr12 24141350 24322311 0 0 Inversion 180961 LOC_Os12g39200 seed maturation protein PM23, putative, expressed FN2939-S Chr12 24141363 24322324 0 0 Inversion 180961 LOC_Os12g39200 seed maturation protein PM23, putative, expressed FN2939-S Chr12 26611650 Chr9 1675493 0 Translocation 0 FN2939-S Chr12 4233833 4233835 0 0 Deletion 2 INTERGENIC HET FN2939-S Chr12 444693 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2939-S Chr12 4835162 4835162 0 0 Insertion 2 upstream_gene_variant HET FN2939-S Chr12 6171473 6171473 0 0 Insertion 2 downstream_gene_variant HET FN2939-S Chr2 13691040 13691040 0 0 Insertion 2 intergenic_region HET FN2939-S Chr2 16477033 16477036 0 0 Deletion 3 downstream_gene_variant HET FN2939-S Chr2 25530092 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2939-S Chr2 25678708 25678708 0 0 Insertion 42 upstream_gene_variant HET FN2939-S Chr2 34738868 34738868 0 0 Insertion 18 upstream_gene_variant HET FN2939-S Chr3 13208911 13208912 0 0 Deletion 1 downstream_gene_variant HET FN2939-S Chr3 14105130 14105130 0 0 Insertion 2 upstream_gene_variant HET FN2939-S Chr3 14401854 14401854 0 0 Insertion 2 downstream_gene_variant HET FN2939-S Chr3 15789634 15789635 0 0 Deletion 1 upstream_gene_variant HET FN2939-S Chr3 16685616 16685616 0 0 Insertion 1 upstream_gene_variant HET FN2939-S Chr3 19772580 19772580 0 0 Insertion 3 upstream_gene_variant HET FN2939-S Chr3 21255700 21255702 0 0 Deletion 2 upstream_gene_variant HET FN2939-S Chr3 31127909 31127909 0 0 Insertion 2 INTERGENIC HET FN2939-S Chr3 32540349 32540354 0 0 Deletion 5 INTERGENIC HOMO FN2939-S Chr3 34562746 34562746 0 0 Insertion 93 upstream_gene_variant HET FN2939-S Chr3 35032123 35032125 0 0 Deletion 2 INTERGENIC HET FN2939-S Chr4 10967395 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g19660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2939-S Chr4 1559843 1559843 0 0 Insertion 1 upstream_gene_variant HET FN2939-S Chr4 18677424 18677424 0 0 Insertion 2 upstream_gene_variant HET FN2939-S Chr4 21187185 21187186 0 0 Deletion 1 upstream_gene_variant HET FN2939-S Chr4 3233692 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g06230 transposon protein, putative, CACTA, En/Spm sub-class FN2939-S Chr4 8745263 8745265 0 0 Deletion 2 upstream_gene_variant HET FN2939-S Chr4 9530080 9530080 0 0 Insertion 1 upstream_gene_variant HET FN2939-S Chr5 10373502 10373502 0 0 Insertion 1 upstream_gene_variant HET FN2939-S Chr5 12061543 12061544 0 0 Deletion 1 upstream_gene_variant HET FN2939-S Chr5 12702223 12702223 0 0 Insertion 1 intron_variant HET FN2939-S Chr5 13949273 13949274 0 0 Deletion 1 upstream_gene_variant HET FN2939-S Chr5 16384764 16384764 0 0 Insertion 18 intergenic_region HET FN2939-S Chr5 19520112 19520120 0 0 Deletion 8 downstream_gene_variant HET FN2939-S Chr5 26409709 26416496 0 0 Inversion 6787 FN2939-S Chr5 26409723 26416504 0 0 Inversion 6781 FN2939-S Chr5 27200736 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2939-S Chr5 27910755 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN2939-S Chr5 3954177 3954178 0 0 Deletion 1 downstream_gene_variant HET FN2939-S Chr5 4517553 4517565 0 0 Deletion 12 INTRON HOMO FN2939-S Chr5 5062025 5062025 0 0 Insertion 1 downstream_gene_variant HET FN2939-S Chr5 9871996 9871996 0 0 Insertion 1 downstream_gene_variant HET FN2939-S Chr6 10659381 10659381 0 0 Insertion 8 upstream_gene_variant HET FN2939-S Chr6 11319269 11319270 0 0 Deletion 1 INTERGENIC HOMO FN2939-S Chr6 19566317 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN2939-S Chr6 20641078 20641078 0 0 Insertion 76 upstream_gene_variant HET FN2939-S Chr6 21594347 21594347 0 0 Insertion 1 downstream_gene_variant HET FN2939-S Chr6 4130423 4130423 0 0 Insertion 4 intergenic_region HET FN2939-S Chr6 5477612 5477627 0 0 Deletion 15 INTERGENIC HOMO FN2939-S Chr6 565232 565234 0 0 Deletion 2 INTRON HET FN2939-S Chr6 9516062 9516062 0 0 Insertion 31 upstream_gene_variant HET FN2939-S Chr7 10511877 10511877 0 0 Insertion 25 upstream_gene_variant HET FN2939-S Chr7 1374025 1374025 0 0 Insertion 1 upstream_gene_variant HET FN2939-S Chr7 15550460 Chr5 5643364 0 Translocation 0 FN2939-S Chr7 19482327 Chr6 19245667 0 Translocation 0 FN2939-S Chr7 20247520 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2939-S Chr7 22763969 22763970 0 0 Deletion 1 upstream_gene_variant HET FN2939-S Chr7 7721995 G-A 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os07g13460 expressed protein FN2939-S Chr7 9848281 9848283 0 0 Deletion 2 upstream_gene_variant HET FN2939-S Chr8 10826472 10826472 0 0 Insertion 1 upstream_gene_variant HET FN2939-S Chr8 10913923 Chr5 9160327 0 Translocation 0 FN2939-S Chr8 13642396 13642396 0 0 Insertion 1 frameshift_variant HET LOC_Os08g22680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2939-S Chr8 16304115 Chr1 10794244 0 Translocation 0 FN2939-S Chr8 16899200 16899200 0 0 Insertion 6 downstream_gene_variant HET FN2939-S Chr8 18376583 18376583 0 0 Insertion 2 upstream_gene_variant HET FN2939-S Chr8 21734592 21734594 0 0 Deletion 2 downstream_gene_variant HET FN2939-S Chr8 23507651 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2939-S Chr8 25744699 25744699 0 0 Insertion 2 downstream_gene_variant HET FN2939-S Chr8 4777487 4777504 0 0 Deletion 17 upstream_gene_variant HET FN2939-S Chr8 5022341 5022341 0 0 Insertion 3 upstream_gene_variant HET FN2939-S Chr8 6383413 6383414 0 0 Deletion 1 downstream_gene_variant HET FN2939-S Chr8 6387389 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2939-S Chr9 10600672 10600672 0 0 Insertion 4 downstream_gene_variant HET FN2939-S Chr9 13645715 13645715 0 0 Insertion 5 upstream_gene_variant HET FN2939-S Chr9 17299227 T-C 0 0 Single Base Substitution 0 INTRON HET FN2939-S Chr9 1935499 1935509 0 0 Deletion 10 INTERGENIC HET FN2939-S Chr9 2913880 2913884 0 0 Deletion 4 INTERGENIC HET FN2939-S Chr9 3653755 3653756 0 0 Deletion 1 upstream_gene_variant HET FN2939-S Chr9 4818945 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO