FN2940-S Chr1 12168241 12168243 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os01g21690 retrotransposon, putative, centromere-specific, expressed FN2940-S Chr1 12201198 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2940-S Chr1 15596932 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2940-S Chr1 31730768 31730769 0 0 Deletion 1 INTERGENIC HET FN2940-S Chr1 6161511 6161512 0 0 Deletion 1 INTERGENIC HOMO FN2940-S Chr10 20077856 20077857 0 0 Deletion 1 upstream_gene_variant HET FN2940-S Chr10 3635517 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2940-S Chr10 5665704 5665704 0 0 Insertion 3 upstream_gene_variant HET FN2940-S Chr10 9732795 9732796 0 0 Deletion 1 upstream_gene_variant HET FN2940-S Chr11 18838613 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2940-S Chr11 21126278 21126280 0 0 Deletion 2 intergenic_region HET FN2940-S Chr11 23519623 Chr4 24265986 0 Translocation 0 LOC_Os04g40874 glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed FN2940-S Chr11 23519636 23519997 0 0 Inversion 361 FN2940-S Chr11 23522693 Chr4 24270555 0 Translocation 0 LOC_Os11g39510 retrotransposon protein, putative, unclassified, expressed FN2940-S Chr11 24787732 24787755 0 0 Deletion 23 upstream_gene_variant HET FN2940-S Chr11 25115600 Chr5 26317109 0 Translocation 0 FN2940-S Chr11 25183854 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2940-S Chr11 4357002 4357002 0 0 Insertion 2 INTERGENIC HET FN2940-S Chr12 11495046 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2940-S Chr12 11871698 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2940-S Chr12 12299692 12299693 0 0 Deletion 1 upstream_gene_variant HET FN2940-S Chr12 14330502 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g24960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2940-S Chr12 17798001 17853000 0 0 Deletion 54999 LOC_Os12g29790 retrotransposon protein, putative, unclassified FN2940-S Chr12 17798001 17853000 0 0 Deletion 54999 LOC_Os12g29800 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN2940-S Chr12 17798001 17853000 0 0 Deletion 54999 LOC_Os12g29810 transposon protein, putative, unclassified, expressed FN2940-S Chr12 17798001 17853000 0 0 Deletion 54999 LOC_Os12g29820 expressed protein FN2940-S Chr12 17798001 17853000 0 0 Deletion 54999 LOC_Os12g29830 expressed protein FN2940-S Chr12 17798001 17853000 0 0 Deletion 54999 LOC_Os12g29840 expressed protein FN2940-S Chr12 17798001 17853000 0 0 Deletion 54999 LOC_Os12g29850 transposon protein, putative, CACTA, En/Spm sub-class FN2940-S Chr12 17798001 17853000 0 0 Deletion 54999 LOC_Os12g30270 retrotransposon protein, putative, unclassified, expressed FN2940-S Chr12 17873062 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2940-S Chr12 24043240 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2940-S Chr12 9118198 9118199 0 0 Deletion 1 intron_variant HET FN2940-S Chr2 13698430 13698751 0 0 Deletion 321 intergenic_region HET FN2940-S Chr2 1417698 1417698 0 0 Insertion 2 UTR_3_PRIME HET FN2940-S Chr2 18782842 18782879 0 0 Deletion 37 upstream_gene_variant HET FN2940-S Chr2 18810277 18810823 0 0 Inversion 546 FN2940-S Chr2 20486311 20486311 0 0 Insertion 16 downstream_gene_variant HET FN2940-S Chr2 24878001 24887000 0 0 Deletion 8999 LOC_Os02g44720 expressed protein FN2940-S Chr2 26721325 26721325 0 0 Insertion 1 upstream_gene_variant HET FN2940-S Chr2 3667280 3667290 0 0 Deletion 10 downstream_gene_variant HET FN2940-S Chr2 9031833 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2940-S Chr2 9031842 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2940-S Chr3 14623132 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2940-S Chr3 1541871 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2940-S Chr3 17270623 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2940-S Chr3 18227078 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2940-S Chr3 21816983 C-T 0 0 Single Base Substitution 0 INTRON HET FN2940-S Chr3 23901198 23901198 0 0 Insertion 1 upstream_gene_variant HET FN2940-S Chr3 24036385 24036385 0 0 Insertion 85 downstream_gene_variant HET FN2940-S Chr3 28218060 28218061 0 0 Deletion 1 upstream_gene_variant HET FN2940-S Chr3 30157618 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN2940-S Chr3 32397597 32397597 0 0 Insertion 44 upstream_gene_variant HET FN2940-S Chr3 34287082 34288774 0 0 Inversion 1692 FN2940-S Chr3 8358049 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2940-S Chr3 9533618 9533618 0 0 Insertion 2 INTERGENIC HET FN2940-S Chr4 107234 107236 0 0 Deletion 2 INTERGENIC HOMO FN2940-S Chr4 18932078 18933045 0 0 Inversion 967 FN2940-S Chr4 19965044 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2940-S Chr4 21210997 21210997 0 0 Insertion 11 upstream_gene_variant HET FN2940-S Chr4 24717863 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2940-S Chr4 31671858 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN2940-S Chr4 535983 535992 0 0 Deletion 9 upstream_gene_variant HET FN2940-S Chr4 9212804 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g16810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2940-S Chr4 9589267 9590595 0 0 Inversion 1328 FN2940-S Chr5 12223018 Chr1 40255502 0 Translocation 0 FN2940-S Chr5 12223344 Chr1 27211624 0 Translocation 0 FN2940-S Chr5 12804950 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2940-S Chr5 14520416 14520416 0 0 Insertion 2 INTERGENIC HET FN2940-S Chr5 17197849 C-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2940-S Chr5 17824207 18135031 0 0 Inversion 310824 FN2940-S Chr5 17824221 18135105 0 0 Inversion 310884 FN2940-S Chr5 19628689 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2940-S Chr5 20267338 20267350 0 0 Deletion 12 INTERGENIC HET FN2940-S Chr5 20602816 20602816 0 0 Insertion 8 upstream_gene_variant HET FN2940-S Chr6 11088113 11088114 0 0 Deletion 1 downstream_gene_variant HET FN2940-S Chr6 15456150 15456150 0 0 Insertion 1 upstream_gene_variant HET FN2940-S Chr6 29550967 29550968 0 0 Deletion 1 upstream_gene_variant HET FN2940-S Chr6 7855170 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2940-S Chr6 8610052 8610053 0 0 Deletion 1 upstream_gene_variant HET FN2940-S Chr6 9006320 9006320 0 0 Insertion 1 downstream_gene_variant HET FN2940-S Chr6 942302 G-A 0 0 Single Base Substitution 0 INTRON HET FN2940-S Chr7 12403177 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2940-S Chr7 22365025 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2940-S Chr7 2635488 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g05610 zinc ion binding protein, putative, expressed FN2940-S Chr7 6209039 6209040 0 0 Deletion 1 downstream_gene_variant HET FN2940-S Chr7 6798318 6798319 0 0 Deletion 1 INTERGENIC HOMO FN2940-S Chr7 9590959 9590960 0 0 Deletion 1 intron_variant HET FN2940-S Chr8 1078981 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2940-S Chr8 12812744 12812755 0 0 Deletion 11 upstream_gene_variant HET FN2940-S Chr8 14299832 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g23620 retrotransposon protein, putative, Ty3-gypsy subclass FN2940-S Chr8 16171403 16171403 0 0 Insertion 1 downstream_gene_variant HET FN2940-S Chr8 17326338 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2940-S Chr8 3731944 3731944 0 0 Insertion 1 upstream_gene_variant HET FN2940-S Chr8 603684 603685 0 0 Deletion 1 intergenic_region HET FN2940-S Chr8 6088991 Chr3 3629975 0 Translocation 0 FN2940-S Chr8 6089753 Chr3 3629966 0 Translocation 0 FN2940-S Chr8 6224330 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2940-S Chr8 985230 Chr1 25907714 0 Translocation 0 FN2940-S Chr9 10594467 10594469 0 0 Deletion 2 upstream_gene_variant HET FN2940-S Chr9 130379 130380 0 0 Deletion 1 upstream_gene_variant HET FN2940-S Chr9 21812197 A-G 0 0 Single Base Substitution 0 INTRON HET FN2940-S Chr9 21812198 A-G 0 0 Single Base Substitution 0 INTRON HET FN2940-S Chr9 3997712 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os09g07860 retrotransposon protein, putative, unclassified FN2940-S Chr9 5730508 5730509 0 0 Deletion 1 upstream_gene_variant HET FN2940-S Chr9 9851225 9851226 0 0 Deletion 1 INTERGENIC HET