FN2942-S Chr1 28071529 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN2942-S Chr1 30295519 30295532 0 0 Deletion 13 FRAME_SHIFT HOMO LOC_Os01g52690 retrotransposon protein, putative, unclassified, expressed FN2942-S Chr1 31479258 31479258 0 0 Insertion 2 INTERGENIC HOMO FN2942-S Chr1 37704058 37704108 0 0 Deletion 50 downstream_gene_variant HET FN2942-S Chr10 17392605 17392628 0 0 Deletion 23 intron_variant HET FN2942-S Chr10 22789987 22789987 0 0 Insertion 21 intron_variant HET FN2942-S Chr10 23172769 T-C 0 0 Single Base Substitution 0 INTRON HET FN2942-S Chr10 3145218 3145219 0 0 Deletion 1 upstream_gene_variant HET FN2942-S Chr10 6366909 6366909 0 0 Insertion 2 upstream_gene_variant HET FN2942-S Chr11 16079537 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN2942-S Chr11 18018371 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g30970 retrotransposon protein, putative, unclassified, expressed FN2942-S Chr11 23606374 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2942-S Chr11 26982523 26982523 0 0 Insertion 1 downstream_gene_variant HET FN2942-S Chr11 27615479 27615489 0 0 Deletion 10 downstream_gene_variant HET FN2942-S Chr11 3986114 3986115 0 0 Deletion 1 upstream_gene_variant HET FN2942-S Chr11 7731082 7731096 0 0 Deletion 14 upstream_gene_variant HET FN2942-S Chr12 11036332 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2942-S Chr12 11519557 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2942-S Chr12 16890436 16890438 0 0 Deletion 2 downstream_gene_variant HET FN2942-S Chr12 21122262 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN2942-S Chr12 21152828 21152832 0 0 Deletion 4 INTERGENIC HOMO FN2942-S Chr12 5695033 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN2942-S Chr12 9615535 9615628 0 0 Deletion 93 upstream_gene_variant HET FN2942-S Chr2 12289667 C-T 0 0 Single Base Substitution 0 INTRON HET FN2942-S Chr2 17567001 17612000 0 0 Deletion 44999 LOC_Os02g29570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2942-S Chr2 17567001 17612000 0 0 Deletion 44999 LOC_Os02g29580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN2942-S Chr2 17567001 17612000 0 0 Deletion 44999 LOC_Os02g29590 expressed protein FN2942-S Chr2 17567001 17612000 0 0 Deletion 44999 LOC_Os02g29600 expressed protein FN2942-S Chr2 17567001 17612000 0 0 Deletion 44999 LOC_Os02g29650 retrotransposon protein, putative, unclassified FN2942-S Chr2 17568190 18006530 0 0 Inversion 438340 FN2942-S Chr2 17622719 18006537 0 0 Inversion 383818 LOC_Os02g29630 retrotransposon protein, putative, unclassified, expressed FN2942-S Chr2 25674067 T-C 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2942-S Chr2 26131738 26131744 0 0 Deletion 6 INTERGENIC HET FN2942-S Chr2 27231296 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2942-S Chr2 2814602 2814603 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os02g05720 pentatricopeptide repeat protein PPR986-12, putative, expressed FN2942-S Chr2 29460847 29460854 0 0 Deletion 7 UTR_5_PRIME HOMO FN2942-S Chr2 34528819 34528823 0 0 Deletion 4 INTERGENIC HOMO FN2942-S Chr3 12759629 12759656 0 0 Deletion 27 upstream_gene_variant HET FN2942-S Chr3 15845491 15847588 0 0 Inversion 2097 FN2942-S Chr3 216024 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2942-S Chr3 23681838 23681839 0 0 Deletion 1 intergenic_region HET FN2942-S Chr3 35301574 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2942-S Chr3 8825062 8825062 0 0 Insertion 9 upstream_gene_variant HET FN2942-S Chr3 9059126 9059126 0 0 Insertion 3 upstream_gene_variant HET FN2942-S Chr4 12290058 Chr3 34340975 0 Translocation 0 LOC_Os03g60380 cinnamoyl CoA reductase, putative, expressed FN2942-S Chr4 13532525 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2942-S Chr4 26598603 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2942-S Chr4 27667028 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g46670 ZOS4-09 - C2H2 zinc finger protein, expressed FN2942-S Chr4 28104062 28104151 0 0 Deletion 89 upstream_gene_variant HET FN2942-S Chr4 28510509 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2942-S Chr4 29699250 29699251 0 0 Deletion 1 upstream_gene_variant HET FN2942-S Chr4 34225230 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN2942-S Chr4 6598668 6598669 0 0 Deletion 1 INTRON HOMO FN2942-S Chr4 7871912 7871912 0 0 Insertion 23 downstream_gene_variant HET FN2942-S Chr5 11149272 11149272 0 0 Insertion 1 upstream_gene_variant HET FN2942-S Chr5 1599817 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN2942-S Chr5 19603853 19603858 0 0 Deletion 5 FRAME_SHIFT HET LOC_Os05g33370 transposon protein, putative, unclassified, expressed FN2942-S Chr5 4446139 4446140 0 0 Deletion 1 upstream_gene_variant HET FN2942-S Chr6 1246778 1246778 0 0 Insertion 27 upstream_gene_variant HET FN2942-S Chr6 13741434 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2942-S Chr6 3762508 3762514 0 0 Deletion 6 INTERGENIC HOMO FN2942-S Chr6 5065652 5065660 0 0 Deletion 8 INTERGENIC HET FN2942-S Chr6 6247525 A-G 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN2942-S Chr6 8410048 8410049 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os06g14810 3-ketoacyl-CoA synthase, putative, expressed FN2942-S Chr6 9107566 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2942-S Chr7 10032723 T-A 0 0 Single Base Substitution 0 INTRON HET FN2942-S Chr7 10607278 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2942-S Chr7 13708741 13708741 0 0 Insertion 1 downstream_gene_variant HET FN2942-S Chr7 14422450 14422450 0 0 Insertion 1 frameshift_variant HET LOC_Os07g25230 retrotransposon protein, putative, unclassified, expressed FN2942-S Chr7 18542654 Chr4 17812135 0 Translocation 0 FN2942-S Chr7 20331374 20331374 0 0 Insertion 1 downstream_gene_variant HET FN2942-S Chr7 27252376 27252386 0 0 Deletion 10 upstream_gene_variant HET FN2942-S Chr7 5633736 5633737 0 0 Deletion 1 frameshift_variant HET LOC_Os07g10470 transposon protein, putative, unclassified, expressed FN2942-S Chr7 78110 A-T 0 0 Single Base Substitution 0 INTRON HET FN2942-S Chr8 10892907 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2942-S Chr8 144604 144604 0 0 Insertion 1 upstream_gene_variant HET FN2942-S Chr8 17291236 17291236 0 0 Insertion 1 upstream_gene_variant HET FN2942-S Chr8 1916845 1916852 0 0 Deletion 7 FRAME_SHIFT HOMO LOC_Os08g03990 expressed protein FN2942-S Chr8 21841117 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN2942-S Chr8 3876548 3876548 0 0 Insertion 1 upstream_gene_variant HET FN2942-S Chr8 6294268 6294269 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os08g10680 expressed protein FN2942-S Chr8 9279448 9279449 0 0 Deletion 1 upstream_gene_variant HET FN2942-S Chr9 109832 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN2942-S Chr9 2741905 Chr7 10663580 0 Translocation 0 LOC_Os07g18020 retrotransposon protein, putative, Ty3-gypsy subclass FN2942-S Chr9 2741905 Chr7 10663580 0 Translocation 0 LOC_Os09g05100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed